Wall clock time and date at job start Tue Mar 31 2020 23:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75882 * 125.20569 * 2 1 4 4 C 1.75880 * 90.96978 * 180.02562 * 3 2 1 5 5 C 1.33388 * 109.59672 * 359.72798 * 4 3 2 6 6 C 1.33390 * 125.20389 * 180.02562 * 2 1 3 7 7 C 1.50701 * 122.53580 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47355 * 85.00027 * 7 6 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53004 * 109.47065 * 204.72115 * 11 10 8 15 15 N 1.46903 * 109.46973 * 54.99676 * 14 11 10 16 16 C 1.46896 * 111.00028 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47190 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99912 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99930 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99971 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99994 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00034 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99992 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47066 * 89.99970 * 24 22 20 26 26 H 1.48500 * 109.46977 * 210.00051 * 24 22 20 27 27 H 1.48495 * 109.47230 * 329.99625 * 24 22 20 28 28 H 1.09000 * 109.47130 * 269.98118 * 1 2 3 29 29 H 1.08999 * 109.46895 * 29.97815 * 1 2 3 30 30 H 1.09000 * 109.47443 * 149.97974 * 1 2 3 31 31 H 1.08006 * 125.20056 * 180.02562 * 4 3 2 32 32 H 1.08000 * 122.54040 * 180.24497 * 5 4 3 33 33 H 1.08998 * 109.47477 * 324.99873 * 7 6 2 34 34 H 1.09002 * 109.47412 * 205.00132 * 7 6 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 37 37 H 1.09003 * 109.47054 * 179.97438 * 13 11 10 38 38 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 39 39 H 1.08997 * 109.47038 * 174.99692 * 14 11 10 40 40 H 1.08999 * 109.47047 * 295.00318 * 14 11 10 41 41 H 1.00906 * 110.99926 * 56.04584 * 15 14 11 42 42 H 1.09001 * 109.46867 * 300.00094 * 16 15 14 43 43 H 1.08992 * 109.47029 * 60.00008 * 16 15 14 44 44 H 0.97002 * 120.00702 * 359.97438 * 19 17 16 45 45 H 0.96998 * 119.99422 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9750 0.4476 -0.0008 5 6 3.6379 -0.8430 0.0050 6 6 2.2760 -1.0899 -0.0005 7 6 1.7051 -2.4846 -0.0005 8 6 1.3997 -2.9024 -1.4159 9 8 1.6231 -2.1422 -2.3341 10 7 0.8773 -4.1204 -1.6613 11 6 0.5861 -4.5287 -3.0377 12 1 0.2459 -3.6648 -3.6087 13 6 1.8529 -5.0977 -3.6798 14 6 -0.5075 -5.5988 -3.0317 15 7 -1.6828 -5.0938 -2.3093 16 6 -2.7554 -6.0971 -2.2826 17 6 -3.9418 -5.5443 -1.5356 18 8 -3.8981 -4.4245 -1.0716 19 7 -5.0516 -6.2937 -1.3841 20 6 -6.1306 -5.7910 -0.7040 21 1 -6.0915 -4.7943 -0.2901 22 6 -7.2747 -6.5640 -0.5473 23 7 -8.3089 -6.0823 0.1050 24 14 -7.3421 -8.2883 -1.2627 25 1 -6.8474 -9.2615 -0.2560 26 1 -8.7438 -8.6196 -1.6244 27 1 -6.4890 -8.3544 -2.4763 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 4.9863 0.8270 -0.0007 32 1 4.3720 -1.6351 0.0095 33 1 0.7886 -2.5022 0.5892 34 1 2.4295 -3.1738 0.4334 35 1 0.6982 -4.7282 -0.9268 36 1 2.1930 -5.9616 -3.1088 37 1 1.6361 -5.4020 -4.7038 38 1 2.6319 -4.3354 -3.6841 39 1 -0.7869 -5.8385 -4.0576 40 1 -0.1351 -6.4960 -2.5373 41 1 -2.0082 -4.2266 -2.7096 42 1 -3.0505 -6.3407 -3.3033 43 1 -2.3984 -6.9975 -1.7829 44 1 -5.0870 -7.1889 -1.7562 45 1 -9.1073 -6.6220 0.2146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569085083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:03 Heat of formation + Delta-G solvation = -68.682959 kcal Electronic energy + Delta-G solvation = -26455.034054 eV Core-core repulsion = 22597.898823 eV Total energy + Delta-G solvation = -3857.135231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01975 -40.26597 -39.04423 -37.60123 -36.03743 -35.06573 -33.72419 -33.21191 -32.33927 -30.45173 -29.06015 -26.72145 -26.49001 -24.51393 -23.73030 -22.38044 -21.40798 -21.22275 -20.24687 -19.29192 -18.13771 -18.06924 -17.85232 -17.35613 -16.75577 -16.53009 -16.10833 -15.93431 -15.63756 -15.36957 -15.05577 -14.86252 -14.70505 -14.44353 -14.29387 -14.18945 -14.03024 -13.68898 -13.43231 -13.32910 -13.12263 -13.00241 -12.92708 -12.78852 -12.66360 -12.61386 -12.40063 -12.38832 -11.97449 -11.80925 -11.63362 -11.49533 -10.82985 -10.42110 -10.23208 -9.92220 -9.43739 -9.33942 -9.27267 -8.40090 -6.00940 0.10361 0.72989 1.09686 1.31057 1.36980 1.45694 1.69969 1.79458 1.98635 2.24227 2.48583 2.74684 3.16508 3.42086 3.82559 3.86685 3.97462 4.12387 4.14916 4.22087 4.27620 4.41042 4.49325 4.50507 4.53521 4.60103 4.63828 4.67743 4.70082 4.73554 4.79334 4.83981 5.04878 5.09814 5.17583 5.30134 5.49399 5.53800 5.61533 5.66661 5.91270 6.04994 6.31231 6.61184 6.72773 6.90082 7.41953 7.42160 7.99129 8.77624 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.002239 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.724591 B =12502.598662 C =14016.269105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.181 4.181 3 S 0.081 5.919 4 C -0.218 4.218 5 C -0.129 4.129 6 C -0.102 4.102 7 C -0.080 4.080 8 C 0.515 3.485 9 O -0.582 6.582 10 N -0.702 5.702 11 C 0.145 3.855 12 H 0.057 0.943 13 C -0.151 4.151 14 C 0.056 3.944 15 N -0.681 5.681 16 C 0.063 3.937 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.054 0.946 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.256 1.256 26 H -0.278 1.278 27 H -0.230 1.230 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.187 0.813 32 H 0.157 0.843 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.339 0.661 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.457 -0.293 -4.441 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.298 4.298 3 S 0.345 5.655 4 C -0.352 4.352 5 C -0.159 4.159 6 C -0.114 4.114 7 C -0.122 4.122 8 C 0.302 3.698 9 O -0.462 6.462 10 N -0.354 5.354 11 C 0.040 3.960 12 H 0.075 0.925 13 C -0.210 4.210 14 C -0.073 4.073 15 N -0.313 5.313 16 C -0.069 4.069 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.234 5.234 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.180 1.180 26 H -0.203 1.203 27 H -0.153 1.153 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.204 0.796 32 H 0.175 0.825 33 H 0.126 0.874 34 H 0.148 0.852 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.225 0.775 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 26.420 2.371 -4.094 26.840 hybrid contribution -0.996 -2.003 -0.691 2.341 sum 25.424 0.369 -4.784 25.873 Atomic orbital electron populations 1.20317 0.87875 1.02803 1.03113 1.24456 1.00229 0.95962 1.09125 1.84123 0.97749 1.09809 1.73855 1.25774 1.02286 0.96422 1.10764 1.20210 0.95345 0.97337 1.02985 1.18494 0.93436 0.94726 1.04782 1.20406 1.04110 0.93829 0.93845 1.20829 0.76290 0.81231 0.91425 1.90680 1.54482 1.53370 1.47651 1.45826 1.63458 1.16491 1.09581 1.20916 0.95130 0.96788 0.83158 0.92494 1.22041 0.96172 1.01116 1.01652 1.22375 0.89163 0.97761 0.98030 1.60061 1.06451 1.05749 1.59005 1.21644 0.89159 0.96473 0.99663 1.21063 0.84932 0.86238 0.84209 1.90555 1.83200 1.22219 1.53856 1.42037 1.13457 1.16567 1.51318 1.18992 0.93021 1.01522 1.32128 0.92805 1.26149 0.94012 1.04246 0.97195 1.69815 1.05549 1.40094 1.42213 0.85346 0.79202 0.76757 0.80078 1.18030 1.20312 1.15320 0.89519 0.91288 0.91974 0.79569 0.82540 0.87399 0.85160 0.75002 0.90508 0.90309 0.93858 0.92141 0.88007 0.84342 0.90707 0.86090 0.77453 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 9.78 71.24 0.70 -1.30 16 2 C -0.18 -4.40 6.50 24.59 0.16 -4.24 16 3 S 0.08 1.71 23.33 -56.49 -1.32 0.39 16 4 C -0.22 -4.01 11.23 66.72 0.75 -3.26 16 5 C -0.13 -2.52 9.96 21.21 0.21 -2.31 16 6 C -0.10 -2.31 4.29 -20.92 -0.09 -2.40 16 7 C -0.08 -1.53 5.34 29.10 0.16 -1.37 16 8 C 0.52 12.43 7.53 87.66 0.66 13.09 16 9 O -0.58 -18.95 15.70 -3.04 -0.05 -18.99 16 10 N -0.70 -13.79 4.80 -442.53 -2.12 -15.92 16 11 C 0.15 2.76 2.81 44.99 0.13 2.88 16 12 H 0.06 1.42 7.58 -2.39 -0.02 1.41 16 13 C -0.15 -2.25 9.48 71.98 0.68 -1.57 16 14 C 0.06 0.92 5.24 86.30 0.45 1.37 16 15 N -0.68 -17.40 5.85 -517.94 -3.03 -20.43 16 16 C 0.06 1.69 6.17 85.56 0.53 2.22 16 17 C 0.45 19.20 7.82 87.66 0.69 19.88 16 18 O -0.61 -32.97 15.78 -3.06 -0.05 -33.02 16 19 N -0.59 -26.90 5.09 -306.99 -1.56 -28.46 16 20 C -0.33 -18.87 10.16 84.04 0.85 -18.02 16 21 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 22 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 23 N -0.94 -56.07 13.96 21.67 0.30 -55.77 16 24 Si 0.97 37.86 27.74 68.60 1.90 39.76 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 26 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.69 7.19 -2.39 -0.02 1.68 16 31 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.11 2.01 7.51 -2.39 -0.02 1.99 16 34 H 0.13 1.62 8.11 -2.39 -0.02 1.60 16 35 H 0.41 6.70 8.60 -92.71 -0.80 5.90 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.34 10.32 8.43 -89.69 -0.76 9.57 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.39 14.46 5.76 -92.71 -0.53 13.93 16 45 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -82.02 393.07 -0.70 -82.72 By element: Atomic # 1 Polarization: 46.34 SS G_CDS: -1.11 Total: 45.23 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.34 Total: 4.48 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -6.41 Total: -120.57 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.10 Total: -52.01 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.76 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.32 Total: 0.39 kcal Total: -82.02 -0.70 -82.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569085083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.033 kcal (2) G-P(sol) polarization free energy of solvation -82.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds