Wall clock time and date at job start Tue Mar 31 2020 22:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 S 1.81403 * 109.47104 * 251.37348 * 3 2 1 5 5 C 1.81395 * 102.99774 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47039 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00068 * 180.02562 * 6 5 4 9 9 C 1.47146 * 120.98900 * 0.02562 * 8 6 5 10 10 C 1.53299 * 108.37377 * 129.38717 * 9 8 6 11 11 O 1.42963 * 109.22750 * 52.35418 * 10 9 8 12 12 C 1.42898 * 114.20625 * 297.50674 * 11 10 9 13 13 C 1.52984 * 109.56021 * 302.52569 * 12 11 10 14 14 C 1.53196 * 109.34879 * 300.95626 * 13 12 11 15 15 N 1.46926 * 108.77911 * 305.42987 * 14 13 12 16 16 C 1.36933 * 120.64668 * 233.64883 * 15 14 13 17 17 H 1.07998 * 119.99597 * 27.58632 * 16 15 14 18 18 C 1.38812 * 120.00097 * 207.59149 * 16 15 14 19 19 N 1.31612 * 120.00175 * 17.96253 * 18 16 15 20 20 Si 1.86804 * 119.99737 * 197.95385 * 18 16 15 21 21 H 1.48500 * 109.47294 * 265.36303 * 20 18 16 22 22 H 1.48496 * 109.47230 * 25.36846 * 20 18 16 23 23 H 1.48504 * 109.46700 * 145.36560 * 20 18 16 24 24 C 1.46938 * 118.71387 * 53.92585 * 15 14 13 25 25 C 1.53000 * 109.54901 * 182.22596 * 12 11 10 26 26 C 1.47152 * 120.98615 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.46650 * 131.37659 * 3 2 1 28 28 H 1.08995 * 109.46976 * 11.37567 * 3 2 1 29 29 H 1.08995 * 109.47526 * 60.00400 * 5 4 3 30 30 H 1.09003 * 109.47094 * 299.99968 * 5 4 3 31 31 H 1.09004 * 109.68878 * 249.10810 * 9 8 6 32 32 H 1.09000 * 109.68417 * 9.66800 * 9 8 6 33 33 H 1.08999 * 109.51680 * 172.28258 * 10 9 8 34 34 H 1.09005 * 109.51118 * 292.38099 * 10 9 8 35 35 H 1.09001 * 109.49185 * 180.99702 * 13 12 11 36 36 H 1.09000 * 109.51583 * 60.93644 * 13 12 11 37 37 H 1.08998 * 109.58986 * 185.63923 * 14 13 12 38 38 H 1.09005 * 109.70311 * 65.29011 * 14 13 12 39 39 H 0.97004 * 120.00500 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.58803 * 65.84531 * 24 15 14 41 41 H 1.09000 * 109.58639 * 186.28284 * 24 15 14 42 42 H 1.09000 * 109.49411 * 178.99880 * 25 12 11 43 43 H 1.08998 * 109.49203 * 299.05378 * 25 12 11 44 44 H 1.09003 * 109.68039 * 110.76239 * 26 8 6 45 45 H 1.09000 * 109.67766 * 350.22476 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 16 3.2125 0.5472 1.6207 5 6 5.0149 0.4834 1.4267 6 6 5.6741 0.9160 2.7110 7 8 4.9947 1.2354 3.6636 8 7 7.0184 0.9480 2.8011 9 6 7.8635 0.5657 1.6588 10 6 8.8954 1.6757 1.4282 11 8 9.5747 1.9494 2.6560 12 6 8.7272 2.4354 3.6988 13 6 8.0160 3.7063 3.2304 14 6 9.0597 4.7642 2.8584 15 7 9.9605 4.9626 4.0021 16 6 10.1737 6.2148 4.5136 17 1 9.4106 6.9733 4.4204 18 6 11.3708 6.5092 5.1518 19 7 12.4216 5.7384 4.9678 20 14 11.4902 7.9997 6.2716 21 1 12.0166 9.1558 5.5025 22 1 10.1429 8.3298 6.8016 23 1 12.4062 7.6981 7.4009 24 6 10.6329 3.7921 4.5824 25 6 9.5676 2.7442 4.9395 26 6 7.6846 1.3663 4.0447 27 1 2.9710 0.6801 -0.7712 28 1 2.9718 -1.0066 -0.2027 29 1 5.3174 1.1510 0.6199 30 1 5.3189 -0.5358 1.1881 31 1 8.3752 -0.3715 1.8780 32 1 7.2460 0.4478 0.7684 33 1 9.6164 1.3524 0.6775 34 1 8.3893 2.5771 1.0825 35 1 7.3834 4.0859 4.0328 36 1 7.4014 3.4795 2.3592 37 1 8.5596 5.7029 2.6200 38 1 9.6337 4.4267 1.9954 39 1 13.2580 5.9439 5.4141 40 1 11.3311 3.3748 3.8570 41 1 11.1715 4.0890 5.4824 42 1 8.9229 3.1316 5.7284 43 1 10.0564 1.8328 5.2838 44 1 8.1764 0.5088 4.5040 45 1 6.9488 1.7805 4.7339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570478518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:19 Heat of formation + Delta-G solvation = -8.464791 kcal Electronic energy + Delta-G solvation = -27812.747087 eV Core-core repulsion = 23958.223112 eV Total energy + Delta-G solvation = -3854.523976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77956 -38.89726 -37.11220 -36.28875 -34.73555 -33.12521 -31.46402 -30.97615 -30.39101 -29.70042 -28.89098 -26.59506 -24.22792 -23.58946 -22.24883 -21.23234 -19.60765 -19.01821 -18.53294 -17.59154 -16.94627 -16.79419 -16.27231 -16.04497 -15.53533 -15.35611 -15.04608 -14.84252 -14.70136 -14.45909 -14.03572 -13.85572 -13.64534 -13.33844 -13.29556 -13.13215 -12.86944 -12.64147 -12.49584 -12.36529 -12.05687 -11.80633 -11.54925 -11.38374 -11.07348 -10.87155 -10.67942 -10.52876 -10.43675 -10.33659 -10.25368 -9.97570 -9.85930 -9.58053 -9.39812 -8.56350 -8.44198 -8.20582 -6.65131 -5.77330 -3.18406 0.49747 1.74300 2.22738 2.28324 2.57034 2.70623 3.26055 3.38180 3.45836 3.48712 3.89402 4.00458 4.37727 4.44534 4.51090 4.57024 4.61111 4.63710 4.76012 4.99117 4.99753 5.20047 5.30096 5.39254 5.47724 5.59155 5.61816 5.71457 5.81863 5.98459 6.16728 6.24434 6.28735 6.48619 6.51908 6.62857 6.72244 6.96658 6.97354 7.06344 7.39047 7.49688 7.72562 7.81290 7.82517 8.46287 9.23245 9.86918 10.44188 11.30977 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.002446 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.290091 B =11446.817685 C =12008.166932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.221 3.779 3 C -0.026 4.026 4 S -0.132 6.132 5 C -0.132 4.132 6 C 0.532 3.468 7 O -0.517 6.517 8 N -0.605 5.605 9 C 0.071 3.929 10 C 0.042 3.958 11 O -0.354 6.354 12 C 0.118 3.882 13 C -0.152 4.152 14 C 0.152 3.848 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.289 1.289 24 C 0.178 3.822 25 C -0.127 4.127 26 C 0.090 3.910 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.253 0.747 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 -15.689 -11.819 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.098 4.098 3 C -0.176 4.176 4 S 0.092 5.908 5 C -0.283 4.283 6 C 0.318 3.682 7 O -0.393 6.393 8 N -0.340 5.340 9 C -0.052 4.052 10 C -0.036 4.036 11 O -0.273 6.273 12 C 0.078 3.922 13 C -0.191 4.191 14 C 0.026 3.974 15 N -0.313 5.313 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.204 1.204 23 H -0.216 1.216 24 C 0.052 3.948 25 C -0.167 4.167 26 C -0.032 4.032 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.842 -15.212 -10.327 22.426 hybrid contribution 1.146 0.292 -0.756 1.403 sum -11.696 -14.920 -11.083 21.960 Atomic orbital electron populations 1.81292 1.12106 1.07874 1.07124 1.27730 0.93723 0.94001 0.94321 1.20821 0.86238 1.07997 1.02577 1.88165 1.01318 1.88490 1.12801 1.23630 0.96303 1.06923 1.01475 1.19485 0.82046 0.78315 0.88374 1.90779 1.62204 1.47691 1.38617 1.48030 1.04660 1.66494 1.14770 1.22560 0.94054 0.99723 0.88898 1.22901 0.95361 0.96592 0.88709 1.88098 1.34065 1.84903 1.20198 1.21789 0.89786 0.91186 0.89428 1.22518 0.99137 0.96740 1.00731 1.20765 0.90929 0.95127 0.90624 1.44060 1.51505 1.03657 1.32105 1.19169 0.97856 0.89282 1.31830 0.91798 1.25015 0.94785 0.98090 1.01782 1.70043 1.00355 1.39974 1.44154 0.86325 0.77476 0.82587 0.80661 1.21530 1.20450 1.21556 1.20785 0.90660 0.84292 0.99056 1.22286 0.99826 1.00844 0.93738 1.22560 0.96221 0.98598 0.85832 0.85353 0.85427 0.86450 0.86537 0.90190 0.89372 0.87991 0.92168 0.91297 0.93159 0.93118 0.96190 0.93677 0.95369 0.89459 0.91049 0.92330 0.90772 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.48 18.54 42.16 0.78 -3.70 16 2 C 0.22 1.70 15.44 -20.76 -0.32 1.38 16 3 C -0.03 -0.09 6.42 34.37 0.22 0.13 16 4 S -0.13 -1.07 20.83 -107.50 -2.24 -3.31 16 5 C -0.13 -0.81 4.80 36.01 0.17 -0.64 16 6 C 0.53 5.93 7.73 -10.99 -0.08 5.85 16 7 O -0.52 -8.06 15.33 5.56 0.09 -7.97 16 8 N -0.60 -6.53 2.52 -172.29 -0.43 -6.96 16 9 C 0.07 0.54 6.54 -3.53 -0.02 0.52 16 10 C 0.04 0.44 6.60 37.31 0.25 0.69 16 11 O -0.35 -5.46 9.00 -35.23 -0.32 -5.78 16 12 C 0.12 1.86 0.68 -90.48 -0.06 1.80 16 13 C -0.15 -2.57 4.33 -26.64 -0.12 -2.68 16 14 C 0.15 3.13 6.28 -3.71 -0.02 3.11 16 15 N -0.59 -14.54 2.99 -172.04 -0.51 -15.05 16 16 C -0.25 -6.84 9.59 -15.06 -0.14 -6.99 16 17 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 19 N -0.90 -25.86 11.20 55.49 0.62 -25.24 16 20 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.18 4.15 5.11 -3.48 -0.02 4.13 16 25 C -0.13 -2.32 5.12 -26.40 -0.14 -2.46 16 26 C 0.09 1.21 5.29 -3.54 -0.02 1.19 16 27 H 0.13 0.12 8.14 -51.92 -0.42 -0.30 16 28 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.12 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.12 0.36 8.02 -51.92 -0.42 -0.05 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.34 6.05 -51.93 -0.31 0.03 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.66 6.29 -51.93 -0.33 0.33 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.75 6.16 -51.93 -0.32 0.43 16 37 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 38 H 0.02 0.42 7.83 -51.93 -0.41 0.01 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 41 H 0.09 2.29 6.02 -51.93 -0.31 1.97 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.50 7.07 -51.93 -0.37 1.13 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -35.22 372.34 -8.44 -43.66 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -6.61 Total: -3.76 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.39 Total: 5.98 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.45 Total: -50.95 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.23 Total: -13.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.24 Total: -3.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.22 -8.44 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570478518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.190 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds