Wall clock time and date at job start Tue Mar 31 2020 23:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 124.52170 * 2 1 4 4 C 1.37477 * 115.09995 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29731 * 359.97438 * 4 3 2 6 6 C 1.46575 * 125.45735 * 180.26523 * 5 4 3 7 7 O 1.21697 * 120.00168 * 359.72040 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.71779 * 6 5 4 9 9 C 1.46497 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.50708 * 109.47373 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99721 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99638 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00621 * 0.02562 * 12 10 9 14 14 C 1.46503 * 119.99522 * 180.02562 * 12 10 9 15 15 C 1.53001 * 109.47068 * 90.00123 * 14 12 10 16 16 H 1.09004 * 109.47178 * 294.99615 * 15 14 12 17 17 C 1.53006 * 109.47067 * 175.00227 * 15 14 12 18 18 N 1.46502 * 109.47308 * 54.99726 * 15 14 12 19 19 C 1.36931 * 120.00277 * 204.99916 * 18 15 14 20 20 H 1.08003 * 119.99980 * 0.02562 * 19 18 15 21 21 C 1.38809 * 119.99961 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46790 * 60.00392 * 23 21 19 25 25 H 1.48498 * 109.47183 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47337 * 300.00499 * 23 21 19 27 27 S 1.70614 * 124.52091 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.02247 * 1 2 3 30 30 H 1.09002 * 109.46816 * 60.01466 * 1 2 3 31 31 H 1.07995 * 122.45037 * 359.93942 * 3 2 1 32 32 H 1.07990 * 123.35307 * 179.97438 * 4 3 2 33 33 H 0.97005 * 120.00165 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47224 * 300.00200 * 9 8 6 35 35 H 1.09006 * 109.47235 * 60.00336 * 9 8 6 36 36 H 1.09001 * 109.47232 * 89.99599 * 13 12 10 37 37 H 1.09001 * 109.47145 * 210.00035 * 13 12 10 38 38 H 1.09000 * 109.46875 * 330.00111 * 13 12 10 39 39 H 1.09002 * 109.47200 * 210.00024 * 14 12 10 40 40 H 1.09002 * 109.47397 * 330.00355 * 14 12 10 41 41 H 1.09000 * 109.46749 * 179.97438 * 17 15 14 42 42 H 1.09004 * 109.46621 * 299.99729 * 17 15 14 43 43 H 1.08997 * 109.47323 * 59.99831 * 17 15 14 44 44 H 0.97003 * 119.99468 * 25.00249 * 18 15 14 45 45 H 0.96998 * 120.00621 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0079 7 8 6.2658 -0.2321 0.0076 8 7 5.5096 -2.3215 0.0140 9 6 6.8718 -2.8605 0.0198 10 6 6.8163 -4.3665 0.0266 11 8 5.7444 -4.9337 0.0262 12 7 7.9579 -5.0828 0.0321 13 6 9.2527 -4.3977 0.0320 14 6 7.9039 -6.5469 0.0382 15 6 7.8882 -7.0626 -1.4021 16 1 6.9691 -6.7423 -1.8928 17 6 7.9576 -8.5911 -1.3973 18 7 9.0420 -6.5236 -2.1265 19 6 8.9976 -6.3990 -3.4894 20 1 8.1118 -6.6977 -4.0304 21 6 10.0910 -5.8888 -4.1756 22 7 11.1706 -5.5252 -3.5165 23 14 10.0306 -5.7195 -6.0351 24 1 8.9154 -4.8150 -6.4138 25 1 11.3139 -5.1531 -6.5224 26 1 9.8143 -7.0551 -6.6470 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5136 -0.8901 31 1 1.8430 2.0964 -0.0010 32 1 4.3550 1.6702 0.0002 33 1 4.7496 -2.9243 0.0139 34 1 7.4010 -2.5201 -0.8703 35 1 7.3965 -2.5126 0.9097 36 1 9.5716 -4.2233 1.0596 37 1 9.9912 -5.0165 -0.4776 38 1 9.1587 -3.4433 -0.4861 39 1 8.7788 -6.9406 0.5557 40 1 7.0000 -6.8750 0.5515 41 1 7.9460 -8.9585 -2.4235 42 1 8.8767 -8.9115 -0.9066 43 1 7.0992 -8.9921 -0.8584 44 1 9.8374 -6.2550 -1.6405 45 1 11.9345 -5.1684 -3.9960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571416031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:43 Heat of formation + Delta-G solvation = -23.418218 kcal Electronic energy + Delta-G solvation = -26794.864795 eV Core-core repulsion = 22939.692390 eV Total energy + Delta-G solvation = -3855.172405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24046 -39.32748 -37.93296 -36.48404 -34.47031 -34.31642 -32.40436 -32.08448 -29.32702 -28.67503 -27.14687 -26.67402 -25.03360 -23.79936 -23.47594 -21.55091 -20.33561 -19.85753 -18.84652 -18.19489 -17.31802 -16.68532 -16.54147 -16.01001 -15.77396 -15.47644 -15.03846 -14.73022 -14.60454 -14.27612 -13.89998 -13.72962 -13.63332 -13.39050 -12.91931 -12.83124 -12.66344 -12.48695 -12.31164 -12.18058 -12.12232 -12.10807 -11.81063 -11.43178 -11.30874 -11.16058 -10.84900 -10.72949 -10.41962 -10.23686 -10.11302 -9.75232 -9.61523 -9.31628 -8.95155 -8.88724 -8.84105 -8.28088 -6.98216 -5.80398 -3.07495 0.25817 1.19451 1.61132 2.13913 2.71836 2.81198 3.08322 3.42605 3.45273 3.47828 3.48715 4.41853 4.55023 4.57969 4.72078 4.81854 5.04029 5.09636 5.28395 5.30604 5.39015 5.42750 5.51590 5.52359 5.54504 5.61237 5.71722 5.81925 5.84382 5.89223 6.06362 6.09493 6.13269 6.23360 6.27038 6.32277 6.66140 6.71445 6.82750 7.09937 7.33442 7.58774 7.69547 8.02134 8.28931 8.39544 9.50496 10.05541 10.41226 11.42455 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.002603 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.140138 B =10752.384888 C =11331.050980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.197 4.197 3 C -0.159 4.159 4 C -0.050 4.050 5 C -0.269 4.269 6 C 0.593 3.407 7 O -0.530 6.530 8 N -0.712 5.712 9 C 0.102 3.898 10 C 0.511 3.489 11 O -0.551 6.551 12 N -0.586 5.586 13 C 0.075 3.925 14 C 0.110 3.890 15 C 0.154 3.846 16 H 0.052 0.948 17 C -0.162 4.162 18 N -0.720 5.720 19 C -0.233 4.233 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.935 5.935 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 S 0.212 5.788 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.408 0.592 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.381 0.619 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 9.219 12.066 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.317 4.317 3 C -0.190 4.190 4 C -0.083 4.083 5 C -0.389 4.389 6 C 0.379 3.621 7 O -0.409 6.409 8 N -0.367 5.367 9 C -0.025 4.025 10 C 0.298 3.702 11 O -0.430 6.430 12 N -0.317 5.317 13 C -0.068 4.068 14 C -0.013 4.013 15 C 0.043 3.957 16 H 0.070 0.930 17 C -0.223 4.223 18 N -0.364 5.364 19 C -0.364 4.364 20 H 0.085 0.915 21 C -0.208 4.208 22 N -0.584 5.584 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.214 1.214 27 S 0.479 5.521 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.216 0.784 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.250 7.872 11.889 22.380 hybrid contribution 0.431 1.458 -1.094 1.873 sum -16.819 9.330 10.795 22.055 Atomic orbital electron populations 1.20396 0.87375 1.03260 1.03362 1.24314 1.01644 0.97988 1.07787 1.19930 0.92596 0.99645 1.06812 1.20745 0.96199 0.95084 0.96269 1.24504 0.96738 0.98160 1.19526 1.16868 0.86991 0.81804 0.76455 1.90840 1.41738 1.58012 1.50273 1.45565 1.09187 1.06565 1.75379 1.21168 0.84614 0.91550 1.05136 1.20263 0.84296 0.89090 0.76553 1.90640 1.28760 1.72065 1.51519 1.47515 1.06006 1.07056 1.71099 1.22010 0.85072 0.99004 1.00755 1.21903 1.02415 0.78289 0.98721 1.20661 0.92731 0.91764 0.90496 0.93039 1.22372 0.99665 0.98673 1.01584 1.42467 1.14002 1.75682 1.04209 1.19167 0.99254 1.34771 0.83251 0.91473 1.24664 0.96364 1.02065 0.97714 1.69602 1.04918 1.49454 1.34456 0.86307 0.76613 0.77705 0.85811 1.21382 1.21718 1.21382 1.83251 0.94102 1.07120 1.67588 0.91183 0.90219 0.90184 0.83815 0.82874 0.75372 0.87620 0.88280 0.93101 0.88598 0.90963 0.90680 0.90011 0.92531 0.93436 0.94302 0.78351 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.33 36.01 0.37 -0.10 16 2 C -0.20 -1.66 6.28 -35.86 -0.23 -1.89 16 3 C -0.16 -1.39 10.00 -41.41 -0.41 -1.80 16 4 C -0.05 -0.54 10.01 -40.43 -0.40 -0.94 16 5 C -0.27 -3.30 6.45 -36.79 -0.24 -3.54 16 6 C 0.59 8.75 7.78 -12.90 -0.10 8.65 16 7 O -0.53 -9.25 16.84 5.19 0.09 -9.16 16 8 N -0.71 -10.14 5.52 -62.83 -0.35 -10.49 16 9 C 0.10 1.48 4.71 -5.19 -0.02 1.45 16 10 C 0.51 8.37 7.74 -10.98 -0.09 8.29 16 11 O -0.55 -10.10 15.25 5.56 0.08 -10.02 16 12 N -0.59 -9.42 2.73 -181.57 -0.50 -9.91 16 13 C 0.07 1.10 9.86 59.84 0.59 1.69 16 14 C 0.11 1.78 5.05 -4.04 -0.02 1.76 16 15 C 0.15 3.02 3.20 -67.93 -0.22 2.81 16 16 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 17 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 18 N -0.72 -16.93 4.57 -53.42 -0.24 -17.18 16 19 C -0.23 -6.28 9.93 -15.06 -0.15 -6.43 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.94 -26.83 13.06 55.49 0.72 -26.10 16 23 Si 0.90 22.26 29.55 -169.99 -5.02 17.24 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 S 0.21 2.07 22.08 -107.50 -2.37 -0.30 16 28 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.41 5.61 6.55 -40.82 -0.27 5.34 16 34 H 0.11 1.61 7.40 -51.93 -0.38 1.23 16 35 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.67 5.62 -51.93 -0.29 1.38 16 38 H 0.07 1.06 6.44 -51.93 -0.33 0.72 16 39 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.08 1.28 7.42 -51.93 -0.39 0.89 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.38 9.16 5.33 -40.82 -0.22 8.94 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -32.48 389.49 -8.87 -41.34 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.49 Total: 11.72 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.66 Total: 6.99 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.36 Total: -63.68 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.17 Total: -19.18 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.37 Total: -0.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.48 -8.87 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571416031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.925 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds