Wall clock time and date at job start Tue Mar 31 2020 23:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 124.52170 * 2 1 4 4 C 1.37477 * 115.09995 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29731 * 359.97438 * 4 3 2 6 6 C 1.46575 * 125.45735 * 180.26523 * 5 4 3 7 7 O 1.21697 * 120.00168 * 359.72040 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.71779 * 6 5 4 9 9 C 1.46497 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.50708 * 109.47373 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99721 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99638 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00621 * 0.02562 * 12 10 9 14 14 C 1.46503 * 119.99522 * 180.02562 * 12 10 9 15 15 C 1.53001 * 109.47068 * 90.00123 * 14 12 10 16 16 H 1.09004 * 109.47178 * 294.99615 * 15 14 12 17 17 C 1.53006 * 109.47067 * 175.00227 * 15 14 12 18 18 N 1.46502 * 109.47308 * 54.99726 * 15 14 12 19 19 C 1.36931 * 120.00277 * 204.99916 * 18 15 14 20 20 H 1.08003 * 119.99980 * 0.02562 * 19 18 15 21 21 C 1.38809 * 119.99961 * 180.02562 * 19 18 15 22 22 N 1.31618 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46790 * 60.00392 * 23 21 19 25 25 H 1.48498 * 109.47183 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47337 * 300.00499 * 23 21 19 27 27 S 1.70614 * 124.52091 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.02247 * 1 2 3 30 30 H 1.09002 * 109.46816 * 60.01466 * 1 2 3 31 31 H 1.07995 * 122.45037 * 359.93942 * 3 2 1 32 32 H 1.07990 * 123.35307 * 179.97438 * 4 3 2 33 33 H 0.97005 * 120.00165 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47224 * 300.00200 * 9 8 6 35 35 H 1.09006 * 109.47235 * 60.00336 * 9 8 6 36 36 H 1.09001 * 109.47232 * 89.99599 * 13 12 10 37 37 H 1.09001 * 109.47145 * 210.00035 * 13 12 10 38 38 H 1.09000 * 109.46875 * 330.00111 * 13 12 10 39 39 H 1.09002 * 109.47200 * 210.00024 * 14 12 10 40 40 H 1.09002 * 109.47397 * 330.00355 * 14 12 10 41 41 H 1.09000 * 109.46749 * 179.97438 * 17 15 14 42 42 H 1.09004 * 109.46621 * 299.99729 * 17 15 14 43 43 H 1.08997 * 109.47323 * 59.99831 * 17 15 14 44 44 H 0.97003 * 119.99468 * 25.00249 * 18 15 14 45 45 H 0.96998 * 120.00621 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0079 7 8 6.2658 -0.2321 0.0076 8 7 5.5096 -2.3215 0.0140 9 6 6.8718 -2.8605 0.0198 10 6 6.8163 -4.3665 0.0266 11 8 5.7444 -4.9337 0.0262 12 7 7.9579 -5.0828 0.0321 13 6 9.2527 -4.3977 0.0320 14 6 7.9039 -6.5469 0.0382 15 6 7.8882 -7.0626 -1.4021 16 1 6.9691 -6.7423 -1.8928 17 6 7.9576 -8.5911 -1.3973 18 7 9.0420 -6.5236 -2.1265 19 6 8.9976 -6.3990 -3.4894 20 1 8.1118 -6.6977 -4.0304 21 6 10.0910 -5.8888 -4.1756 22 7 11.1706 -5.5252 -3.5165 23 14 10.0306 -5.7195 -6.0351 24 1 8.9154 -4.8150 -6.4138 25 1 11.3139 -5.1531 -6.5224 26 1 9.8143 -7.0551 -6.6470 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5136 -0.8901 31 1 1.8430 2.0964 -0.0010 32 1 4.3550 1.6702 0.0002 33 1 4.7496 -2.9243 0.0139 34 1 7.4010 -2.5201 -0.8703 35 1 7.3965 -2.5126 0.9097 36 1 9.5716 -4.2233 1.0596 37 1 9.9912 -5.0165 -0.4776 38 1 9.1587 -3.4433 -0.4861 39 1 8.7788 -6.9406 0.5557 40 1 7.0000 -6.8750 0.5515 41 1 7.9460 -8.9585 -2.4235 42 1 8.8767 -8.9115 -0.9066 43 1 7.0992 -8.9921 -0.8584 44 1 9.8374 -6.2550 -1.6405 45 1 11.9345 -5.1684 -3.9960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571416031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:42 Heat of formation + Delta-G solvation = -44.600796 kcal Electronic energy + Delta-G solvation = -26795.783341 eV Core-core repulsion = 22939.692390 eV Total energy + Delta-G solvation = -3856.090950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47208 -40.51202 -38.74585 -37.99845 -35.88850 -35.68244 -33.97332 -33.05973 -30.89502 -30.02050 -28.25873 -27.77604 -26.39372 -25.43216 -24.44439 -22.57721 -21.82763 -21.00361 -19.99552 -19.28148 -19.15269 -17.83826 -17.70116 -17.25144 -16.80461 -16.73566 -16.47810 -16.15545 -15.77507 -15.49538 -15.32710 -14.85414 -14.79137 -14.28116 -14.19234 -13.99857 -13.79564 -13.67745 -13.62524 -13.34147 -13.24500 -13.07859 -12.94276 -12.79074 -12.74308 -12.70197 -12.50048 -12.22229 -11.88729 -11.87535 -11.62119 -11.39501 -11.09283 -10.91741 -10.48154 -9.67270 -9.63584 -9.59249 -8.94598 -7.92680 -5.17622 -0.56328 0.41796 0.86029 1.32179 1.42193 1.45895 1.46681 1.52459 1.64712 2.06406 2.25439 2.56179 3.32226 3.41631 3.69248 3.85572 3.88755 4.08075 4.18867 4.21680 4.24990 4.31005 4.36739 4.44706 4.63587 4.67470 4.68220 4.73578 4.74737 4.87731 4.96195 5.01478 5.04668 5.07770 5.16293 5.19315 5.26938 5.35177 5.40186 5.52760 5.63914 6.21770 6.27676 6.33829 6.89239 6.98698 7.38455 8.11901 8.39537 9.29535 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.002603 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.140138 B =10752.384888 C =11331.050980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.182 4.182 3 C -0.168 4.168 4 C -0.045 4.045 5 C -0.309 4.309 6 C 0.592 3.408 7 O -0.567 6.567 8 N -0.711 5.711 9 C 0.107 3.893 10 C 0.509 3.491 11 O -0.572 6.572 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.116 3.884 15 C 0.151 3.849 16 H 0.024 0.976 17 C -0.153 4.153 18 N -0.725 5.725 19 C -0.233 4.233 20 H 0.060 0.940 21 C -0.064 4.064 22 N -0.958 5.958 23 Si 0.958 3.042 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.283 1.283 27 S 0.215 5.785 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.171 0.829 32 H 0.153 0.847 33 H 0.411 0.589 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.378 0.622 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.955 9.538 12.964 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.302 4.302 3 C -0.197 4.197 4 C -0.079 4.079 5 C -0.429 4.429 6 C 0.380 3.620 7 O -0.448 6.448 8 N -0.365 5.365 9 C -0.020 4.020 10 C 0.297 3.703 11 O -0.453 6.453 12 N -0.318 5.318 13 C -0.065 4.065 14 C -0.007 4.007 15 C 0.042 3.958 16 H 0.042 0.958 17 C -0.213 4.213 18 N -0.368 5.368 19 C -0.366 4.366 20 H 0.078 0.922 21 C -0.257 4.257 22 N -0.609 5.609 23 Si 0.788 3.212 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.209 1.209 27 S 0.483 5.517 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.189 0.811 32 H 0.170 0.830 33 H 0.249 0.751 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.214 0.786 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.163 8.157 12.801 24.447 hybrid contribution 0.873 1.354 -1.343 2.098 sum -18.290 9.511 11.458 23.585 Atomic orbital electron populations 1.20572 0.84927 1.04252 1.04874 1.24787 1.03134 0.97015 1.05259 1.20154 0.91556 1.01096 1.06915 1.20983 0.97428 0.94559 0.94925 1.24369 0.96422 0.99229 1.22874 1.17221 0.87797 0.81494 0.75472 1.90803 1.43149 1.58651 1.52237 1.45577 1.09098 1.06647 1.75219 1.21126 0.85059 0.90279 1.05513 1.20522 0.84016 0.89736 0.76023 1.90621 1.29502 1.72626 1.52581 1.47610 1.06388 1.07144 1.70691 1.22032 0.83767 0.98024 1.02693 1.21846 1.03991 0.78453 0.96424 1.20810 0.90034 0.93059 0.91941 0.95770 1.22217 1.01464 0.96784 1.00828 1.42549 1.15035 1.75942 1.03289 1.19376 0.98698 1.33533 0.84962 0.92199 1.25270 0.96469 1.02916 1.01060 1.69719 1.05215 1.50642 1.35339 0.85450 0.76178 0.77570 0.81969 1.21388 1.21988 1.20916 1.83208 0.93184 1.07696 1.67605 0.90528 0.88431 0.88693 0.81124 0.82971 0.75103 0.88670 0.86392 0.89410 0.91141 0.91255 0.88499 0.88883 0.94665 0.92644 0.91268 0.78628 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.33 71.24 0.74 0.06 16 2 C -0.18 -2.65 6.28 24.68 0.15 -2.49 16 3 C -0.17 -2.58 10.00 21.09 0.21 -2.37 16 4 C -0.04 -0.94 10.01 21.72 0.22 -0.72 16 5 C -0.31 -7.61 6.45 24.08 0.16 -7.45 16 6 C 0.59 17.90 7.78 86.42 0.67 18.57 16 7 O -0.57 -20.40 16.84 -4.34 -0.07 -20.47 16 8 N -0.71 -20.59 5.52 -470.90 -2.60 -23.19 16 9 C 0.11 3.11 4.71 85.64 0.40 3.52 16 10 C 0.51 16.53 7.74 87.66 0.68 17.21 16 11 O -0.57 -20.87 15.25 -3.01 -0.05 -20.92 16 12 N -0.59 -18.45 2.73 -846.75 -2.31 -20.76 16 13 C 0.08 2.23 9.86 127.77 1.26 3.49 16 14 C 0.12 3.60 5.05 86.38 0.44 4.04 16 15 C 0.15 5.86 3.20 44.99 0.14 6.00 16 16 H 0.02 1.07 8.08 -2.38 -0.02 1.05 16 17 C -0.15 -5.19 9.49 71.98 0.68 -4.51 16 18 N -0.72 -34.26 4.57 -322.92 -1.47 -35.74 16 19 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16 20 H 0.06 3.29 7.83 -2.91 -0.02 3.26 16 21 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 22 N -0.96 -55.54 13.06 21.65 0.28 -55.26 16 23 Si 0.96 46.16 29.55 68.60 2.03 48.19 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 27 S 0.22 4.03 22.08 -56.49 -1.25 2.78 16 28 H 0.08 0.52 8.11 -2.39 -0.02 0.50 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.15 3.12 8.06 -2.92 -0.02 3.09 16 33 H 0.41 11.45 6.55 -92.70 -0.61 10.84 16 34 H 0.10 2.99 7.40 -2.38 -0.02 2.98 16 35 H 0.12 2.96 8.11 -2.38 -0.02 2.94 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.45 5.62 -2.39 -0.01 2.43 16 38 H 0.07 2.02 6.44 -2.39 -0.02 2.01 16 39 H 0.10 2.61 8.07 -2.39 -0.02 2.59 16 40 H 0.09 2.72 7.42 -2.39 -0.02 2.70 16 41 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.38 18.31 5.33 -92.71 -0.49 17.81 16 45 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -70.44 389.49 1.53 -68.91 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.08 Total: 36.12 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 7.05 Total: 20.34 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -6.10 Total: -134.95 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.12 Total: -41.39 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.25 Total: 2.78 kcal Total: -70.44 1.53 -68.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571416031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.306 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds