Wall clock time and date at job start Tue Mar 31 2020 23:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35457 * 125.56695 * 2 1 4 4 C 1.39830 * 107.86594 * 180.12816 * 3 2 1 5 5 C 1.50703 * 126.45674 * 179.83342 * 4 3 2 6 6 C 1.37877 * 107.08807 * 359.57119 * 4 3 2 7 7 C 1.46672 * 126.23558 * 180.24075 * 6 4 3 8 8 O 1.21694 * 119.99952 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99971 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99932 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47077 * 34.99751 * 10 9 7 12 12 C 1.53003 * 109.46703 * 275.00029 * 10 9 7 13 13 C 1.52996 * 109.47033 * 155.00283 * 10 9 7 14 14 N 1.46504 * 109.47020 * 304.99733 * 13 10 9 15 15 C 1.34773 * 119.99899 * 180.02562 * 14 13 10 16 16 O 1.21287 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99906 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47000 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99817 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00360 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99898 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47282 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47076 * 120.00131 * 23 21 19 26 26 H 1.48501 * 109.47000 * 239.99742 * 23 21 19 27 27 N 1.35536 * 125.56567 * 179.64131 * 2 1 3 28 28 H 0.97004 * 125.67756 * 0.02562 * 27 2 1 29 29 H 1.09007 * 109.47009 * 270.35606 * 1 2 3 30 30 H 1.08995 * 109.47257 * 30.35380 * 1 2 3 31 31 H 1.08997 * 109.47165 * 150.35750 * 1 2 3 32 32 H 1.08001 * 126.06437 * 359.95892 * 3 2 1 33 33 H 1.09002 * 109.47152 * 269.68794 * 5 4 3 34 34 H 1.09001 * 109.46980 * 149.68894 * 5 4 3 35 35 H 1.09004 * 109.47113 * 29.68875 * 5 4 3 36 36 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 37 37 H 1.08998 * 109.47230 * 59.99935 * 12 10 9 38 38 H 1.08998 * 109.46815 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.47127 * 299.99691 * 12 10 9 40 40 H 1.08994 * 109.47439 * 64.99685 * 13 10 9 41 41 H 1.09000 * 109.47054 * 185.00008 * 13 10 9 42 42 H 0.97003 * 119.99946 * 359.97438 * 14 13 10 43 43 H 1.08994 * 109.47097 * 299.99716 * 17 15 14 44 44 H 1.09000 * 109.46854 * 59.99707 * 17 15 14 45 45 H 0.96992 * 120.00235 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0030 5 6 4.8486 1.5592 -0.0076 6 6 3.6122 -0.7020 0.0051 7 6 4.7860 -1.5815 0.0104 8 8 5.9049 -1.1030 0.0082 9 7 4.6253 -2.9196 0.0188 10 6 5.7977 -3.7982 0.0246 11 1 6.5931 -3.3387 0.6114 12 6 6.2815 -4.0124 -1.4110 13 6 5.4216 -5.1463 0.6426 14 7 4.8468 -4.9305 1.9727 15 6 4.4404 -5.9829 2.7101 16 8 4.5502 -7.1087 2.2723 17 6 3.8497 -5.7609 4.0786 18 16 3.4046 -7.3558 4.8096 19 6 2.7580 -6.8136 6.3564 20 1 2.7325 -5.7599 6.5915 21 6 2.2815 -7.7409 7.2727 22 7 2.3121 -9.0252 6.9860 23 14 1.5953 -7.1660 8.9123 24 1 1.6722 -5.6850 8.9892 25 1 0.1791 -7.5957 9.0342 26 1 2.3898 -7.7605 10.0171 27 7 2.2953 -1.1025 0.0069 28 1 1.9834 -2.0210 0.0123 29 1 -0.3633 0.0064 1.0277 30 1 -0.3633 0.8867 -0.5193 31 1 -0.3633 -0.8931 -0.5083 32 1 1.9545 2.1268 -0.0006 33 1 5.1436 1.7659 -1.0363 34 1 5.6640 1.0535 0.5096 35 1 4.6217 2.4964 0.5007 36 1 3.7334 -3.3010 0.0209 37 1 6.5494 -3.0519 -1.8513 38 1 7.1535 -4.6664 -1.4067 39 1 5.4861 -4.4719 -1.9977 40 1 4.6901 -5.6458 0.0074 41 1 6.3129 -5.7679 0.7284 42 1 4.7593 -4.0302 2.3230 43 1 4.5813 -5.2614 4.7135 44 1 2.9583 -5.1394 3.9930 45 1 1.9788 -9.6731 7.6262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579333439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:10 Heat of formation + Delta-G solvation = -46.685603 kcal Electronic energy + Delta-G solvation = -26294.158271 eV Core-core repulsion = 22437.976917 eV Total energy + Delta-G solvation = -3856.181354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76740 -39.89693 -39.01190 -36.54502 -33.86173 -33.00167 -32.47169 -32.30895 -31.03876 -29.44947 -28.00721 -26.70199 -26.01397 -25.41226 -22.61067 -21.19735 -20.68420 -20.42407 -19.60955 -18.72630 -17.87468 -16.75667 -16.33849 -16.20384 -15.66636 -15.41656 -15.09211 -14.84333 -14.68096 -14.35947 -14.08798 -13.71460 -13.58276 -13.36588 -13.28380 -13.14274 -13.07614 -12.94888 -12.88278 -12.61312 -12.50888 -12.31371 -12.25440 -11.87462 -11.75030 -11.34254 -11.10320 -11.06412 -10.79342 -10.22062 -9.85528 -9.60489 -9.47276 -9.12565 -9.06616 -9.02959 -8.31521 -8.29073 -6.55330 -6.26127 -3.97092 1.13413 2.36889 2.66144 2.75260 2.95749 3.00618 3.09565 3.18527 3.25189 3.29676 3.63955 4.16140 4.29420 4.44494 4.56747 4.74471 4.77481 4.90480 4.92775 5.07385 5.09296 5.11207 5.14301 5.28518 5.34076 5.44086 5.46551 5.49022 5.59633 5.62462 5.65468 5.70329 5.81265 5.86545 5.89874 6.06693 6.07570 6.16298 6.45072 6.46646 6.65145 7.00131 7.17065 7.55390 7.57448 7.85921 8.31224 8.49680 9.19525 10.81347 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.002519 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.996706 B =11112.837728 C =12853.029154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.059 3.941 3 C -0.211 4.211 4 C -0.067 4.067 5 C -0.091 4.091 6 C -0.066 4.066 7 C 0.593 3.407 8 O -0.525 6.525 9 N -0.730 5.730 10 C 0.134 3.866 11 H 0.099 0.901 12 C -0.160 4.160 13 C 0.113 3.887 14 N -0.740 5.740 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.279 1.279 27 N -0.538 5.538 28 H 0.415 0.585 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 19.803 -18.176 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 C -0.235 4.235 4 C -0.076 4.076 5 C -0.148 4.148 6 C -0.178 4.178 7 C 0.381 3.619 8 O -0.401 6.401 9 N -0.382 5.382 10 C 0.029 3.971 11 H 0.117 0.883 12 C -0.219 4.219 13 C -0.012 4.012 14 N -0.396 5.396 15 C 0.318 3.682 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 N -0.135 5.135 28 H 0.252 0.748 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.229 0.771 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.262 17.878 -18.853 26.013 hybrid contribution -1.327 1.371 1.725 2.572 sum -0.065 19.249 -17.128 25.766 Atomic orbital electron populations 1.20449 0.87535 1.03658 1.03354 1.20561 0.93727 0.86168 1.05425 1.20588 0.91796 0.98010 1.13120 1.19949 0.95523 0.91023 1.01105 1.20355 0.94635 0.97607 1.02173 1.20104 0.82803 0.94149 1.20715 1.17028 0.87585 0.81189 0.76061 1.90819 1.24136 1.74972 1.50185 1.46026 1.09863 1.05816 1.76498 1.21269 0.88544 0.89403 0.97877 0.88313 1.22108 1.01839 1.02889 0.95090 1.21627 1.00014 0.95529 0.84048 1.46020 1.65902 1.09933 1.17739 1.20336 0.77118 0.84352 0.86398 1.90714 1.53587 1.22796 1.71813 1.23532 1.03179 1.08208 0.95518 1.85392 1.79957 1.00739 1.17187 1.22901 1.47495 0.95706 1.02267 0.90887 1.24998 0.95306 0.94521 0.98764 1.70021 1.43892 1.00571 1.35784 0.86113 0.78610 0.78828 0.81928 1.19602 1.20546 1.20515 1.41890 1.05418 1.08488 1.57694 0.74796 0.90314 0.89710 0.91394 0.83987 0.91570 0.90095 0.91971 0.77058 0.91445 0.90907 0.92111 0.90972 0.89766 0.76733 0.89179 0.89369 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.41 36.00 0.37 -0.06 16 2 C 0.06 0.45 7.13 -81.95 -0.58 -0.14 16 3 C -0.21 -1.85 10.66 -39.98 -0.43 -2.28 16 4 C -0.07 -0.70 6.21 -104.16 -0.65 -1.34 16 5 C -0.09 -0.86 9.83 36.01 0.35 -0.51 16 6 C -0.07 -0.66 7.06 -81.98 -0.58 -1.24 16 7 C 0.59 6.33 7.75 -12.86 -0.10 6.23 16 8 O -0.52 -7.07 14.46 5.19 0.08 -7.00 16 9 N -0.73 -6.04 4.51 -55.11 -0.25 -6.28 16 10 C 0.13 1.15 2.73 -67.93 -0.19 0.96 16 11 H 0.10 0.98 7.58 -51.93 -0.39 0.58 16 12 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 13 C 0.11 1.15 5.23 -4.04 -0.02 1.13 16 14 N -0.74 -9.16 5.39 -60.29 -0.32 -9.48 16 15 C 0.53 9.44 7.85 -10.98 -0.09 9.35 16 16 O -0.52 -11.18 15.86 5.55 0.09 -11.09 16 17 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 23 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 N -0.54 -4.09 5.99 -5.70 -0.03 -4.12 16 28 H 0.41 2.16 8.19 -40.82 -0.33 1.83 16 29 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.90 6.48 -51.93 -0.34 0.56 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.40 2.63 7.73 -40.82 -0.32 2.32 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.40 4.24 8.14 -40.82 -0.33 3.91 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -36.14 396.37 -8.85 -45.00 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.75 Total: 4.15 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.13 Total: -4.37 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.13 Total: -45.07 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.16 Total: -18.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.14 -8.85 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579333439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.690 kcal (2) G-P(sol) polarization free energy of solvation -36.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds