Wall clock time and date at job start Tue Mar 31 2020 23:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35457 * 125.56695 * 2 1 4 4 C 1.39830 * 107.86594 * 180.12816 * 3 2 1 5 5 C 1.50703 * 126.45674 * 179.83342 * 4 3 2 6 6 C 1.37877 * 107.08807 * 359.57119 * 4 3 2 7 7 C 1.46672 * 126.23558 * 180.24075 * 6 4 3 8 8 O 1.21694 * 119.99952 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99971 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99932 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47077 * 34.99751 * 10 9 7 12 12 C 1.53003 * 109.46703 * 275.00029 * 10 9 7 13 13 C 1.52996 * 109.47033 * 155.00283 * 10 9 7 14 14 N 1.46504 * 109.47020 * 304.99733 * 13 10 9 15 15 C 1.34773 * 119.99899 * 180.02562 * 14 13 10 16 16 O 1.21287 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99906 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47000 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99817 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00360 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99898 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47282 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47076 * 120.00131 * 23 21 19 26 26 H 1.48501 * 109.47000 * 239.99742 * 23 21 19 27 27 N 1.35536 * 125.56567 * 179.64131 * 2 1 3 28 28 H 0.97004 * 125.67756 * 0.02562 * 27 2 1 29 29 H 1.09007 * 109.47009 * 270.35606 * 1 2 3 30 30 H 1.08995 * 109.47257 * 30.35380 * 1 2 3 31 31 H 1.08997 * 109.47165 * 150.35750 * 1 2 3 32 32 H 1.08001 * 126.06437 * 359.95892 * 3 2 1 33 33 H 1.09002 * 109.47152 * 269.68794 * 5 4 3 34 34 H 1.09001 * 109.46980 * 149.68894 * 5 4 3 35 35 H 1.09004 * 109.47113 * 29.68875 * 5 4 3 36 36 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 37 37 H 1.08998 * 109.47230 * 59.99935 * 12 10 9 38 38 H 1.08998 * 109.46815 * 180.02562 * 12 10 9 39 39 H 1.08999 * 109.47127 * 299.99691 * 12 10 9 40 40 H 1.08994 * 109.47439 * 64.99685 * 13 10 9 41 41 H 1.09000 * 109.47054 * 185.00008 * 13 10 9 42 42 H 0.97003 * 119.99946 * 359.97438 * 14 13 10 43 43 H 1.08994 * 109.47097 * 299.99716 * 17 15 14 44 44 H 1.09000 * 109.46854 * 59.99707 * 17 15 14 45 45 H 0.96992 * 120.00235 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0030 5 6 4.8486 1.5592 -0.0076 6 6 3.6122 -0.7020 0.0051 7 6 4.7860 -1.5815 0.0104 8 8 5.9049 -1.1030 0.0082 9 7 4.6253 -2.9196 0.0188 10 6 5.7977 -3.7982 0.0246 11 1 6.5931 -3.3387 0.6114 12 6 6.2815 -4.0124 -1.4110 13 6 5.4216 -5.1463 0.6426 14 7 4.8468 -4.9305 1.9727 15 6 4.4404 -5.9829 2.7101 16 8 4.5502 -7.1087 2.2723 17 6 3.8497 -5.7609 4.0786 18 16 3.4046 -7.3558 4.8096 19 6 2.7580 -6.8136 6.3564 20 1 2.7325 -5.7599 6.5915 21 6 2.2815 -7.7409 7.2727 22 7 2.3121 -9.0252 6.9860 23 14 1.5953 -7.1660 8.9123 24 1 1.6722 -5.6850 8.9892 25 1 0.1791 -7.5957 9.0342 26 1 2.3898 -7.7605 10.0171 27 7 2.2953 -1.1025 0.0069 28 1 1.9834 -2.0210 0.0123 29 1 -0.3633 0.0064 1.0277 30 1 -0.3633 0.8867 -0.5193 31 1 -0.3633 -0.8931 -0.5083 32 1 1.9545 2.1268 -0.0006 33 1 5.1436 1.7659 -1.0363 34 1 5.6640 1.0535 0.5096 35 1 4.6217 2.4964 0.5007 36 1 3.7334 -3.3010 0.0209 37 1 6.5494 -3.0519 -1.8513 38 1 7.1535 -4.6664 -1.4067 39 1 5.4861 -4.4719 -1.9977 40 1 4.6901 -5.6458 0.0074 41 1 6.3129 -5.7679 0.7284 42 1 4.7593 -4.0302 2.3230 43 1 4.5813 -5.2614 4.7135 44 1 2.9583 -5.1394 3.9930 45 1 1.9788 -9.6731 7.6262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579333439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:09 Heat of formation + Delta-G solvation = -72.774969 kcal Electronic energy + Delta-G solvation = -26295.289591 eV Core-core repulsion = 22437.976917 eV Total energy + Delta-G solvation = -3857.312674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43148 -40.92495 -40.15233 -37.51109 -34.96250 -34.59744 -33.69380 -33.03926 -31.78952 -30.80481 -28.62076 -27.76175 -27.37091 -26.78965 -23.36756 -21.95273 -21.77763 -21.31504 -20.37966 -19.84869 -19.36047 -17.87211 -17.62771 -17.21701 -16.89491 -16.49484 -16.39900 -16.18854 -15.82842 -15.36998 -15.09759 -14.87009 -14.55657 -14.34737 -14.27360 -13.97511 -13.93900 -13.82167 -13.64045 -13.55582 -13.28886 -13.17727 -13.07447 -12.98187 -12.92526 -12.91448 -12.60899 -12.39916 -12.11357 -11.72517 -11.17354 -11.06738 -11.03307 -10.34544 -10.29681 -10.21031 -9.71868 -8.97883 -8.68107 -8.36583 -6.14324 0.41059 1.24870 1.40137 1.45258 1.55787 1.56623 1.72381 1.93703 2.13895 2.23658 2.26654 2.32392 2.97833 3.29443 3.49515 3.86378 3.92219 3.95598 4.01156 4.18736 4.21867 4.26043 4.28459 4.47731 4.53778 4.62765 4.65189 4.72684 4.80373 4.82331 4.89651 4.90998 4.97120 5.14407 5.18842 5.21121 5.32449 5.37641 5.40737 5.47394 5.80582 5.96648 6.18397 6.36114 6.38475 6.55670 7.05259 7.08256 7.15727 8.72757 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.002519 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.996706 B =11112.837728 C =12853.029154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.067 3.933 3 C -0.227 4.227 4 C -0.089 4.089 5 C -0.087 4.087 6 C -0.087 4.087 7 C 0.593 3.407 8 O -0.559 6.559 9 N -0.718 5.718 10 C 0.144 3.856 11 H 0.089 0.911 12 C -0.155 4.155 13 C 0.116 3.884 14 N -0.715 5.715 15 C 0.537 3.463 16 O -0.559 6.559 17 C -0.132 4.132 18 S -0.145 6.145 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.997 3.003 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.275 1.275 27 N -0.529 5.529 28 H 0.426 0.574 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.157 0.843 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.406 0.594 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.411 0.589 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 21.576 -18.200 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.251 4.251 4 C -0.098 4.098 5 C -0.144 4.144 6 C -0.199 4.199 7 C 0.383 3.617 8 O -0.438 6.438 9 N -0.371 5.371 10 C 0.039 3.961 11 H 0.107 0.893 12 C -0.214 4.214 13 C -0.008 4.008 14 N -0.369 5.369 15 C 0.323 3.677 16 O -0.437 6.437 17 C -0.283 4.283 18 S 0.082 5.918 19 C -0.694 4.694 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.200 1.200 27 N -0.127 5.127 28 H 0.265 0.735 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.241 0.759 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.247 0.753 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.052 19.675 -18.903 27.284 hybrid contribution -0.905 0.910 1.620 2.067 sum -0.957 20.585 -17.283 26.895 Atomic orbital electron populations 1.20561 0.85233 1.04954 1.04082 1.21063 0.95064 0.85718 1.03368 1.20851 0.91290 0.99247 1.13709 1.20246 0.96415 0.91533 1.01589 1.20303 0.94008 0.97986 1.02122 1.20030 0.83503 0.94130 1.22216 1.17140 0.87345 0.81693 0.75567 1.90802 1.25410 1.75624 1.51945 1.45901 1.10332 1.05123 1.75711 1.21146 0.88299 0.88254 0.98373 0.89291 1.22061 1.02659 1.02602 0.94074 1.21751 1.00005 0.96450 0.82628 1.45746 1.63978 1.09202 1.17943 1.19978 0.77128 0.84629 0.85976 1.90708 1.55753 1.24665 1.72552 1.23381 1.04596 1.03876 0.96471 1.85533 1.80610 1.07264 1.18424 1.23222 1.47451 0.96161 1.02573 0.90091 1.26104 0.95451 0.94503 1.03007 1.70175 1.45056 1.02051 1.37404 0.84924 0.77841 0.78918 0.76385 1.18156 1.19791 1.20019 1.41882 1.04577 1.09249 1.57011 0.73495 0.89722 0.88396 0.90181 0.82583 0.91483 0.92073 0.90592 0.75877 0.92560 0.89812 0.91064 0.90264 0.89877 0.75302 0.87728 0.87211 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.41 71.24 0.74 0.15 16 2 C 0.07 0.87 7.13 41.34 0.29 1.17 16 3 C -0.23 -3.65 10.66 22.01 0.23 -3.41 16 4 C -0.09 -1.79 6.21 -19.56 -0.12 -1.91 16 5 C -0.09 -1.67 9.83 71.24 0.70 -0.97 16 6 C -0.09 -1.67 7.06 40.35 0.28 -1.39 16 7 C 0.59 12.29 7.75 86.45 0.67 12.96 16 8 O -0.56 -15.17 14.46 -4.33 -0.06 -15.23 16 9 N -0.72 -10.81 4.51 -446.50 -2.02 -12.83 16 10 C 0.14 2.26 2.73 44.99 0.12 2.39 16 11 H 0.09 1.66 7.58 -2.39 -0.02 1.64 16 12 C -0.16 -2.13 9.48 71.98 0.68 -1.45 16 13 C 0.12 2.16 5.23 86.38 0.45 2.61 16 14 N -0.71 -16.31 5.39 -463.06 -2.49 -18.81 16 15 C 0.54 18.47 7.85 87.66 0.69 19.16 16 16 O -0.56 -24.25 15.86 -3.05 -0.05 -24.30 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 18 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 19 C -0.55 -30.73 9.50 67.95 0.65 -30.08 16 20 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 23 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 N -0.53 -7.07 5.99 -171.93 -1.03 -8.10 16 28 H 0.43 3.47 8.19 -92.71 -0.76 2.71 16 29 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.41 6.48 -2.39 -0.02 1.39 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.41 4.53 7.73 -92.71 -0.72 3.81 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.41 7.74 8.14 -92.71 -0.75 6.98 16 43 H 0.10 3.70 8.14 -2.40 -0.02 3.68 16 44 H 0.11 3.71 8.14 -2.40 -0.02 3.70 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -80.22 396.37 0.61 -79.61 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -1.19 Total: 22.60 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 6.30 Total: -4.10 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -5.25 Total: -94.64 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.11 Total: -39.53 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -80.22 0.61 -79.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579333439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.839 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds