Wall clock time and date at job start Tue Mar 31 2020 22:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86803 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46862 * 300.00319 * 3 2 1 6 6 H 1.48501 * 109.46886 * 60.00359 * 3 2 1 7 7 C 1.38657 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99763 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99785 * 185.06085 * 9 7 2 11 11 C 1.38898 * 120.07006 * 354.48697 * 10 9 7 12 12 C 1.38082 * 119.93032 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06866 * 359.74298 * 12 11 10 14 14 C 1.38279 * 120.13832 * 0.51414 * 13 12 11 15 15 C 1.50699 * 119.96830 * 179.76236 * 14 13 12 16 16 N 1.46503 * 109.47060 * 269.72530 * 15 14 13 17 17 C 1.34777 * 120.00027 * 180.02562 * 16 15 14 18 18 O 1.21510 * 119.99518 * 359.97438 * 17 16 15 19 19 C 1.48236 * 120.00370 * 180.02562 * 17 16 15 20 20 C 1.36485 * 120.34795 * 179.97438 * 19 17 16 21 21 C 1.51462 * 132.04494 * 359.97438 * 20 19 17 22 22 C 1.54031 * 103.05914 * 179.97438 * 21 20 19 23 23 N 1.46436 * 105.13404 * 0.07631 * 22 21 20 24 24 C 1.31198 * 111.73059 * 359.94638 * 23 22 21 25 25 N 1.38251 * 129.20676 * 180.02562 * 24 23 22 26 26 C 1.36135 * 120.86201 * 179.97438 * 25 24 23 27 27 C 1.34736 * 121.27926 * 359.97438 * 26 25 24 28 28 C 1.38124 * 120.06771 * 359.48956 * 14 13 12 29 29 H 0.97008 * 119.99622 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03565 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96357 * 180.02562 * 12 11 10 32 32 H 1.07996 * 119.93595 * 180.27350 * 13 12 11 33 33 H 1.09003 * 109.47618 * 149.72483 * 15 14 13 34 34 H 1.09003 * 109.46831 * 29.72298 * 15 14 13 35 35 H 0.96996 * 120.00364 * 359.97438 * 16 15 14 36 36 H 1.08999 * 110.70842 * 61.56164 * 21 20 19 37 37 H 1.09002 * 110.75166 * 298.32726 * 21 20 19 38 38 H 1.09001 * 110.33068 * 241.13056 * 22 21 20 39 39 H 1.09007 * 110.32679 * 119.02107 * 22 21 20 40 40 H 0.97006 * 119.56341 * 359.95876 * 25 24 23 41 41 H 1.08002 * 119.35985 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.06155 * 180.02562 * 27 26 25 43 43 H 1.08007 * 120.03679 * 180.23572 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0927 12 6 4.2024 -4.5969 0.2014 13 6 3.5686 -5.8198 0.3284 14 6 2.1875 -5.8885 0.3363 15 6 1.5010 -7.2234 0.4695 16 7 1.2715 -7.7896 -0.8621 17 6 0.6662 -8.9869 -0.9901 18 8 0.3111 -9.5970 -0.0010 19 6 0.4345 -9.5601 -2.3374 20 6 -0.1774 -10.7723 -2.4751 21 6 -0.7233 -11.7543 -1.4594 22 6 -1.2675 -12.8969 -2.3374 23 7 -0.9938 -12.4837 -3.7154 24 6 -0.3963 -11.3166 -3.7630 25 7 0.0224 -10.5935 -4.8644 26 6 0.6315 -9.3851 -4.7159 27 6 0.8457 -8.8548 -3.4960 28 6 1.4366 -4.7343 0.2279 29 1 -0.4850 0.8401 0.0004 30 1 3.9527 -2.4845 -0.0015 31 1 5.2811 -4.5469 0.1918 32 1 4.1534 -6.7233 0.4177 33 1 0.5457 -7.0917 0.9778 34 1 2.1303 -7.8995 1.0483 35 1 1.5546 -7.3025 -1.6516 36 1 -1.5250 -11.3005 -0.8768 37 1 0.0710 -12.1163 -0.8066 38 1 -2.3401 -13.0148 -2.1835 39 1 -0.7486 -13.8284 -2.1112 40 1 -0.1195 -10.9520 -5.7545 41 1 0.9493 -8.8409 -5.5931 42 1 1.3304 -7.8943 -3.4011 43 1 0.3579 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:41 Heat of formation + Delta-G solvation = 25.430550 kcal Electronic energy + Delta-G solvation = -27395.942697 eV Core-core repulsion = 23407.444582 eV Total energy + Delta-G solvation = -3988.498115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30901 -39.58920 -38.96087 -37.26614 -36.84879 -34.60941 -33.86939 -32.37360 -30.86812 -29.82027 -29.34101 -29.11019 -26.59197 -25.40729 -24.44507 -22.57945 -22.20736 -21.74702 -20.85476 -20.54205 -18.17595 -17.90010 -17.54622 -17.25375 -16.64556 -16.02226 -15.92542 -15.54539 -15.36994 -15.03759 -14.51566 -14.44753 -14.05551 -13.96966 -13.65906 -13.58301 -13.53668 -13.22696 -12.78054 -12.46828 -12.40056 -12.31293 -12.03196 -11.92123 -11.71314 -11.42882 -10.99551 -10.86270 -10.74361 -10.63488 -10.49605 -10.33940 -10.06589 -9.77947 -9.44849 -9.05348 -8.93397 -8.29657 -7.47531 -7.37548 -6.53012 -4.12553 0.32928 1.44161 1.84367 2.22089 2.39192 2.62814 3.05932 3.08572 3.14056 3.22748 3.45324 3.89081 4.03274 4.33736 4.45601 4.52813 4.61879 4.75100 4.88152 4.96008 5.02721 5.07433 5.21035 5.28000 5.47768 5.52436 5.69242 5.70175 5.79149 5.81517 5.85704 5.86303 5.94685 6.00445 6.03542 6.20827 6.38479 6.50386 6.52140 6.73991 6.76961 6.95384 7.13782 7.22787 7.31328 7.48454 7.53160 7.66606 7.91089 8.13536 8.92483 9.60740 10.64722 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002093 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.295745 B =13373.350160 C =13833.853835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.074 4.074 15 C 0.168 3.832 16 N -0.711 5.711 17 C 0.552 3.448 18 O -0.533 6.533 19 C -0.045 4.045 20 C -0.116 4.116 21 C -0.096 4.096 22 C 0.046 3.954 23 N -0.582 5.582 24 C 0.373 3.627 25 N -0.594 5.594 26 C 0.139 3.861 27 C -0.220 4.220 28 C -0.171 4.171 29 H 0.270 0.730 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.404 0.596 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.419 0.581 41 H 0.172 0.828 42 H 0.148 0.852 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -17.747 -8.557 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.244 4.244 12 C -0.094 4.094 13 C -0.214 4.214 14 C -0.075 4.075 15 C 0.045 3.955 16 N -0.362 5.362 17 C 0.338 3.662 18 O -0.411 6.411 19 C -0.054 4.054 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.085 4.085 23 N -0.308 5.308 24 C 0.104 3.896 25 N -0.210 5.210 26 C 0.014 3.986 27 C -0.246 4.246 28 C -0.191 4.191 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.240 0.760 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.255 0.745 41 H 0.189 0.811 42 H 0.165 0.835 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.250 -18.788 -8.327 20.673 hybrid contribution 0.905 1.667 -0.067 1.898 sum 3.155 -17.121 -8.394 19.327 Atomic orbital electron populations 1.70044 1.05981 1.27694 1.45753 1.25304 0.95852 0.98886 0.96452 0.85643 0.79125 0.80312 0.78325 1.19077 1.20106 1.20085 1.21373 0.91822 0.80730 1.53005 0.88962 1.83984 1.34292 1.11419 1.78223 1.19322 0.90258 0.88077 0.92713 1.21252 0.93840 0.99107 1.10231 1.20749 0.98588 0.92248 0.97848 1.20481 0.93314 0.97164 1.10459 1.19246 0.93493 0.92757 1.01970 1.20194 1.00268 0.91466 0.83548 1.46036 1.60112 1.19966 1.10115 1.18309 0.78162 0.81252 0.88433 1.90756 1.50865 1.60479 1.38990 1.19357 0.98488 0.93876 0.93661 1.21476 1.00357 0.95620 0.94800 1.21470 1.01553 0.93699 0.96688 1.22725 1.01371 0.98006 0.86426 1.74021 1.23396 1.11303 1.22079 1.19636 0.92929 0.91456 0.85621 1.41014 1.54162 1.17369 1.08455 1.21560 0.92699 0.84717 0.99651 1.20466 1.10793 1.03120 0.90267 1.20091 0.99452 0.89831 1.09695 0.91969 0.85449 0.87269 0.87476 0.90631 0.90730 0.76020 0.88690 0.88763 0.89836 0.89875 0.74511 0.81088 0.83463 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.51 13.67 55.48 0.76 -23.76 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.53 9.49 30.89 0.29 -10.24 16 8 H 0.09 2.28 5.20 -52.48 -0.27 2.00 16 9 O -0.18 -4.78 9.76 0.04 0.00 -4.78 16 10 C 0.15 3.39 6.65 -39.11 -0.26 3.13 16 11 C -0.22 -4.52 9.17 -39.39 -0.36 -4.88 16 12 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 13 C -0.19 -3.02 9.70 -39.54 -0.38 -3.40 16 14 C -0.07 -1.19 5.25 -104.65 -0.55 -1.73 16 15 C 0.17 2.34 5.80 -5.19 -0.03 2.31 16 16 N -0.71 -8.87 5.51 -62.30 -0.34 -9.21 16 17 C 0.55 7.46 7.79 -12.15 -0.09 7.36 16 18 O -0.53 -8.68 15.33 5.36 0.08 -8.59 16 19 C -0.05 -0.52 5.86 -105.08 -0.62 -1.13 16 20 C -0.12 -1.38 6.12 -103.63 -0.63 -2.02 16 21 C -0.10 -1.09 5.54 -26.97 -0.15 -1.24 16 22 C 0.05 0.48 7.96 -3.54 -0.03 0.45 16 23 N -0.58 -7.05 11.60 -59.70 -0.69 -7.74 16 24 C 0.37 4.11 8.18 -155.85 -1.28 2.84 16 25 N -0.59 -4.33 5.39 -12.14 -0.07 -4.40 16 26 C 0.14 0.82 11.14 -16.88 -0.19 0.63 16 27 C -0.22 -1.81 9.50 -39.48 -0.38 -2.18 16 28 C -0.17 -3.31 9.65 -39.39 -0.38 -3.69 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.07 1.00 8.08 -51.93 -0.42 0.59 16 35 H 0.40 4.35 6.55 -40.82 -0.27 4.09 16 36 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 37 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.42 1.97 8.92 -40.82 -0.36 1.60 16 41 H 0.17 0.28 8.06 -52.49 -0.42 -0.14 16 42 H 0.15 0.96 6.48 -52.49 -0.34 0.62 16 43 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -33.57 367.46 -10.16 -43.74 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.89 Total: 8.92 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -5.52 Total: -14.50 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.34 Total: -45.10 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.57 -10.16 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.168 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds