Wall clock time and date at job start Tue Mar 31 2020 22:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86803 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46862 * 300.00319 * 3 2 1 6 6 H 1.48501 * 109.46886 * 60.00359 * 3 2 1 7 7 C 1.38657 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99763 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99785 * 185.06085 * 9 7 2 11 11 C 1.38898 * 120.07006 * 354.48697 * 10 9 7 12 12 C 1.38082 * 119.93032 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06866 * 359.74298 * 12 11 10 14 14 C 1.38279 * 120.13832 * 0.51414 * 13 12 11 15 15 C 1.50699 * 119.96830 * 179.76236 * 14 13 12 16 16 N 1.46503 * 109.47060 * 269.72530 * 15 14 13 17 17 C 1.34777 * 120.00027 * 180.02562 * 16 15 14 18 18 O 1.21510 * 119.99518 * 359.97438 * 17 16 15 19 19 C 1.48236 * 120.00370 * 180.02562 * 17 16 15 20 20 C 1.36485 * 120.34795 * 179.97438 * 19 17 16 21 21 C 1.51462 * 132.04494 * 359.97438 * 20 19 17 22 22 C 1.54031 * 103.05914 * 179.97438 * 21 20 19 23 23 N 1.46436 * 105.13404 * 0.07631 * 22 21 20 24 24 C 1.31198 * 111.73059 * 359.94638 * 23 22 21 25 25 N 1.38251 * 129.20676 * 180.02562 * 24 23 22 26 26 C 1.36135 * 120.86201 * 179.97438 * 25 24 23 27 27 C 1.34736 * 121.27926 * 359.97438 * 26 25 24 28 28 C 1.38124 * 120.06771 * 359.48956 * 14 13 12 29 29 H 0.97008 * 119.99622 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03565 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96357 * 180.02562 * 12 11 10 32 32 H 1.07996 * 119.93595 * 180.27350 * 13 12 11 33 33 H 1.09003 * 109.47618 * 149.72483 * 15 14 13 34 34 H 1.09003 * 109.46831 * 29.72298 * 15 14 13 35 35 H 0.96996 * 120.00364 * 359.97438 * 16 15 14 36 36 H 1.08999 * 110.70842 * 61.56164 * 21 20 19 37 37 H 1.09002 * 110.75166 * 298.32726 * 21 20 19 38 38 H 1.09001 * 110.33068 * 241.13056 * 22 21 20 39 39 H 1.09007 * 110.32679 * 119.02107 * 22 21 20 40 40 H 0.97006 * 119.56341 * 359.95876 * 25 24 23 41 41 H 1.08002 * 119.35985 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.06155 * 180.02562 * 27 26 25 43 43 H 1.08007 * 120.03679 * 180.23572 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0927 12 6 4.2024 -4.5969 0.2014 13 6 3.5686 -5.8198 0.3284 14 6 2.1875 -5.8885 0.3363 15 6 1.5010 -7.2234 0.4695 16 7 1.2715 -7.7896 -0.8621 17 6 0.6662 -8.9869 -0.9901 18 8 0.3111 -9.5970 -0.0010 19 6 0.4345 -9.5601 -2.3374 20 6 -0.1774 -10.7723 -2.4751 21 6 -0.7233 -11.7543 -1.4594 22 6 -1.2675 -12.8969 -2.3374 23 7 -0.9938 -12.4837 -3.7154 24 6 -0.3963 -11.3166 -3.7630 25 7 0.0224 -10.5935 -4.8644 26 6 0.6315 -9.3851 -4.7159 27 6 0.8457 -8.8548 -3.4960 28 6 1.4366 -4.7343 0.2279 29 1 -0.4850 0.8401 0.0004 30 1 3.9527 -2.4845 -0.0015 31 1 5.2811 -4.5469 0.1918 32 1 4.1534 -6.7233 0.4177 33 1 0.5457 -7.0917 0.9778 34 1 2.1303 -7.8995 1.0483 35 1 1.5546 -7.3025 -1.6516 36 1 -1.5250 -11.3005 -0.8768 37 1 0.0710 -12.1163 -0.8066 38 1 -2.3401 -13.0148 -2.1835 39 1 -0.7486 -13.8284 -2.1112 40 1 -0.1195 -10.9520 -5.7545 41 1 0.9493 -8.8409 -5.5931 42 1 1.3304 -7.8943 -3.4011 43 1 0.3579 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:40 Heat of formation + Delta-G solvation = 1.734983 kcal Electronic energy + Delta-G solvation = -27396.970214 eV Core-core repulsion = 23407.444582 eV Total energy + Delta-G solvation = -3989.525631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10088 -40.93507 -40.29337 -38.44644 -37.98075 -35.83572 -34.69577 -34.26394 -32.20973 -30.78342 -30.52729 -30.04978 -27.85527 -27.15832 -25.48907 -23.31816 -23.25664 -23.03805 -22.34662 -21.55210 -19.65473 -18.97406 -18.66023 -18.35731 -17.79119 -16.93732 -16.79574 -16.73571 -16.53684 -16.43038 -16.07468 -15.87858 -15.50176 -15.13001 -14.86182 -14.66533 -14.34673 -14.24945 -14.01779 -13.85463 -13.71747 -13.37260 -13.23568 -13.02067 -12.94564 -12.69420 -12.55046 -12.34714 -12.25966 -12.07607 -11.34240 -11.21738 -11.16163 -11.13266 -10.80773 -10.62873 -10.15867 -9.74703 -9.01775 -8.45958 -8.20424 -6.14143 -0.48385 0.39045 0.72268 0.75838 1.37161 1.44663 1.54941 1.70184 1.76462 2.12745 2.18350 2.60547 2.85610 3.15546 3.28253 3.41348 3.65206 3.70212 3.83563 3.89971 4.10983 4.12437 4.23149 4.29307 4.32273 4.42204 4.54024 4.56282 4.66340 4.74748 4.79307 4.90968 5.01871 5.02968 5.10310 5.13141 5.14211 5.26779 5.28563 5.31921 5.64032 5.72263 5.73561 5.91602 6.03139 6.06313 6.17994 6.46874 6.81844 6.99296 7.09206 7.79830 8.77303 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002093 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.295745 B =13373.350160 C =13833.853835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.410 4.410 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.113 3.887 11 C -0.232 4.232 12 C -0.069 4.069 13 C -0.167 4.167 14 C -0.059 4.059 15 C 0.173 3.827 16 N -0.701 5.701 17 C 0.549 3.451 18 O -0.566 6.566 19 C -0.040 4.040 20 C -0.155 4.155 21 C -0.092 4.092 22 C 0.048 3.952 23 N -0.612 5.612 24 C 0.370 3.630 25 N -0.580 5.580 26 C 0.172 3.828 27 C -0.248 4.248 28 C -0.180 4.180 29 H 0.272 0.728 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.434 0.566 41 H 0.227 0.773 42 H 0.166 0.834 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.499 -18.611 -10.312 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.172 1.172 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.122 0.878 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.252 4.252 12 C -0.087 4.087 13 C -0.185 4.185 14 C -0.059 4.059 15 C 0.050 3.950 16 N -0.353 5.353 17 C 0.337 3.663 18 O -0.446 6.446 19 C -0.049 4.049 20 C -0.162 4.162 21 C -0.131 4.131 22 C -0.083 4.083 23 N -0.340 5.340 24 C 0.101 3.899 25 N -0.197 5.197 26 C 0.046 3.954 27 C -0.274 4.274 28 C -0.200 4.200 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.273 0.727 41 H 0.243 0.757 42 H 0.183 0.817 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.441 -19.703 -10.118 22.808 hybrid contribution 0.069 1.640 0.454 1.703 sum 5.510 -18.063 -9.665 21.215 Atomic orbital electron populations 1.70192 1.08053 1.28670 1.49033 1.26568 0.96803 1.02756 0.96003 0.84542 0.78396 0.74973 0.78406 1.17215 1.19432 1.19731 1.21857 0.92547 0.81319 1.52880 0.87827 1.83952 1.35952 1.12571 1.81420 1.19847 0.91636 0.87809 0.94465 1.21377 0.92971 1.00414 1.10428 1.21157 1.00429 0.91090 0.95992 1.20993 0.92981 0.98310 1.06258 1.19392 0.93960 0.92351 1.00214 1.20087 0.99899 0.90525 0.84472 1.45883 1.59805 1.19709 1.09920 1.18694 0.77483 0.81083 0.89059 1.90742 1.52127 1.61383 1.40343 1.19456 0.98054 0.93783 0.93584 1.21568 1.02654 0.96487 0.95475 1.21364 1.00836 0.94165 0.96705 1.22723 1.01635 0.97921 0.86031 1.73984 1.25199 1.12291 1.22523 1.19740 0.92568 0.91279 0.86342 1.41247 1.52681 1.17355 1.08368 1.22403 0.89018 0.83276 1.00724 1.20701 1.12602 1.04156 0.89944 1.20213 0.99389 0.90167 1.10223 0.91931 0.86195 0.83349 0.83403 0.91736 0.89239 0.74800 0.90130 0.89668 0.89522 0.89201 0.72714 0.75710 0.81677 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.36 13.67 21.61 0.30 -55.06 16 2 C -0.02 -1.32 5.49 84.84 0.47 -0.85 16 3 Si 1.02 41.41 29.55 68.60 2.03 43.43 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.41 -22.86 9.49 67.92 0.64 -22.21 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.35 9.76 -22.76 -0.22 -13.57 16 10 C 0.11 5.20 6.65 22.58 0.15 5.35 16 11 C -0.23 -9.13 9.17 22.39 0.21 -8.93 16 12 C -0.07 -2.02 10.04 22.25 0.22 -1.80 16 13 C -0.17 -4.40 9.70 22.30 0.22 -4.18 16 14 C -0.06 -1.74 5.25 -19.88 -0.10 -1.85 16 15 C 0.17 4.49 5.80 85.63 0.50 4.99 16 16 N -0.70 -16.14 5.51 -469.31 -2.58 -18.72 16 17 C 0.55 14.36 7.79 86.90 0.68 15.04 16 18 O -0.57 -18.52 15.33 -3.75 -0.06 -18.57 16 19 C -0.04 -0.87 5.86 -20.16 -0.12 -0.99 16 20 C -0.15 -3.65 6.12 -19.22 -0.12 -3.77 16 21 C -0.09 -2.20 5.54 30.44 0.17 -2.03 16 22 C 0.05 1.03 7.96 86.74 0.69 1.72 16 23 N -0.61 -14.61 11.60 -342.80 -3.98 -18.58 16 24 C 0.37 7.71 8.18 134.27 1.10 8.81 16 25 N -0.58 -6.65 5.39 -192.31 -1.04 -7.68 16 26 C 0.17 1.26 11.14 83.22 0.93 2.19 16 27 C -0.25 -3.29 9.50 22.33 0.21 -3.08 16 28 C -0.18 -7.05 9.65 22.39 0.22 -6.83 16 29 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 30 H 0.12 4.83 5.64 -2.91 -0.02 4.82 16 31 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 34 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 35 H 0.41 7.82 6.55 -92.71 -0.61 7.22 16 36 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16 37 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.43 2.54 8.92 -92.70 -0.83 1.71 16 41 H 0.23 -0.75 8.06 -2.91 -0.02 -0.78 16 42 H 0.17 1.54 6.48 -2.91 -0.02 1.52 16 43 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -79.97 367.46 0.15 -79.82 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.34 Total: 27.35 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 6.05 Total: -18.40 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -7.30 Total: -100.05 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.28 Total: -32.15 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -79.97 0.15 -79.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.553 kcal (2) G-P(sol) polarization free energy of solvation -79.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds