Wall clock time and date at job start Tue Mar 31 2020 22:20:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31550 * 1
3 3 Si 1.86803 * 120.00259 * 2 1
4 4 H 1.48501 * 109.47052 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.46862 * 300.00319 * 3 2 1
6 6 H 1.48501 * 109.46886 * 60.00359 * 3 2 1
7 7 C 1.38657 * 119.99877 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99763 * 179.97438 * 7 2 1
9 9 O 1.34830 * 119.99899 * 359.97438 * 7 2 1
10 10 C 1.35751 * 116.99785 * 185.06085 * 9 7 2
11 11 C 1.38898 * 120.07006 * 354.48697 * 10 9 7
12 12 C 1.38082 * 119.93032 * 179.97438 * 11 10 9
13 13 C 1.38322 * 120.06866 * 359.74298 * 12 11 10
14 14 C 1.38279 * 120.13832 * 0.51414 * 13 12 11
15 15 C 1.50699 * 119.96830 * 179.76236 * 14 13 12
16 16 N 1.46503 * 109.47060 * 269.72530 * 15 14 13
17 17 C 1.34777 * 120.00027 * 180.02562 * 16 15 14
18 18 O 1.21510 * 119.99518 * 359.97438 * 17 16 15
19 19 C 1.48236 * 120.00370 * 180.02562 * 17 16 15
20 20 C 1.36485 * 120.34795 * 179.97438 * 19 17 16
21 21 C 1.51462 * 132.04494 * 359.97438 * 20 19 17
22 22 C 1.54031 * 103.05914 * 179.97438 * 21 20 19
23 23 N 1.46436 * 105.13404 * 0.07631 * 22 21 20
24 24 C 1.31198 * 111.73059 * 359.94638 * 23 22 21
25 25 N 1.38251 * 129.20676 * 180.02562 * 24 23 22
26 26 C 1.36135 * 120.86201 * 179.97438 * 25 24 23
27 27 C 1.34736 * 121.27926 * 359.97438 * 26 25 24
28 28 C 1.38124 * 120.06771 * 359.48956 * 14 13 12
29 29 H 0.97008 * 119.99622 * 359.97438 * 1 2 3
30 30 H 1.08001 * 120.03565 * 0.02562 * 11 10 9
31 31 H 1.07997 * 119.96357 * 180.02562 * 12 11 10
32 32 H 1.07996 * 119.93595 * 180.27350 * 13 12 11
33 33 H 1.09003 * 109.47618 * 149.72483 * 15 14 13
34 34 H 1.09003 * 109.46831 * 29.72298 * 15 14 13
35 35 H 0.96996 * 120.00364 * 359.97438 * 16 15 14
36 36 H 1.08999 * 110.70842 * 61.56164 * 21 20 19
37 37 H 1.09002 * 110.75166 * 298.32726 * 21 20 19
38 38 H 1.09001 * 110.33068 * 241.13056 * 22 21 20
39 39 H 1.09007 * 110.32679 * 119.02107 * 22 21 20
40 40 H 0.97006 * 119.56341 * 359.95876 * 25 24 23
41 41 H 1.08002 * 119.35985 * 179.97438 * 26 25 24
42 42 H 1.07999 * 120.06155 * 180.02562 * 27 26 25
43 43 H 1.08007 * 120.03679 * 180.23572 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.7096 1.3463 -0.0006
5 1 1.8908 2.3964 -1.2125
6 1 1.8909 2.3964 1.2126
7 6 2.0088 -1.2008 -0.0005
8 1 3.0888 -1.2008 -0.0010
9 8 1.3346 -2.3685 -0.0005
10 6 2.0699 -3.5046 0.1056
11 6 3.4573 -3.4395 0.0927
12 6 4.2024 -4.5969 0.2014
13 6 3.5686 -5.8198 0.3284
14 6 2.1875 -5.8885 0.3363
15 6 1.5010 -7.2234 0.4695
16 7 1.2715 -7.7896 -0.8621
17 6 0.6662 -8.9869 -0.9901
18 8 0.3111 -9.5970 -0.0010
19 6 0.4345 -9.5601 -2.3374
20 6 -0.1774 -10.7723 -2.4751
21 6 -0.7233 -11.7543 -1.4594
22 6 -1.2675 -12.8969 -2.3374
23 7 -0.9938 -12.4837 -3.7154
24 6 -0.3963 -11.3166 -3.7630
25 7 0.0224 -10.5935 -4.8644
26 6 0.6315 -9.3851 -4.7159
27 6 0.8457 -8.8548 -3.4960
28 6 1.4366 -4.7343 0.2279
29 1 -0.4850 0.8401 0.0004
30 1 3.9527 -2.4845 -0.0015
31 1 5.2811 -4.5469 0.1918
32 1 4.1534 -6.7233 0.4177
33 1 0.5457 -7.0917 0.9778
34 1 2.1303 -7.8995 1.0483
35 1 1.5546 -7.3025 -1.6516
36 1 -1.5250 -11.3005 -0.8768
37 1 0.0710 -12.1163 -0.8066
38 1 -2.3401 -13.0148 -2.1835
39 1 -0.7486 -13.8284 -2.1112
40 1 -0.1195 -10.9520 -5.7545
41 1 0.9493 -8.8409 -5.5931
42 1 1.3304 -7.8943 -3.4011
43 1 0.3579 -4.7882 0.2379
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001580051900.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:20:40
Heat of formation + Delta-G solvation = 1.734983 kcal
Electronic energy + Delta-G solvation = -27396.970214 eV
Core-core repulsion = 23407.444582 eV
Total energy + Delta-G solvation = -3989.525631 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.10088 -40.93507 -40.29337 -38.44644 -37.98075 -35.83572 -34.69577 -34.26394
-32.20973 -30.78342 -30.52729 -30.04978 -27.85527 -27.15832 -25.48907 -23.31816
-23.25664 -23.03805 -22.34662 -21.55210 -19.65473 -18.97406 -18.66023 -18.35731
-17.79119 -16.93732 -16.79574 -16.73571 -16.53684 -16.43038 -16.07468 -15.87858
-15.50176 -15.13001 -14.86182 -14.66533 -14.34673 -14.24945 -14.01779 -13.85463
-13.71747 -13.37260 -13.23568 -13.02067 -12.94564 -12.69420 -12.55046 -12.34714
-12.25966 -12.07607 -11.34240 -11.21738 -11.16163 -11.13266 -10.80773 -10.62873
-10.15867 -9.74703 -9.01775 -8.45958 -8.20424 -6.14143 -0.48385 0.39045
0.72268 0.75838 1.37161 1.44663 1.54941 1.70184 1.76462 2.12745
2.18350 2.60547 2.85610 3.15546 3.28253 3.41348 3.65206 3.70212
3.83563 3.89971 4.10983 4.12437 4.23149 4.29307 4.32273 4.42204
4.54024 4.56282 4.66340 4.74748 4.79307 4.90968 5.01871 5.02968
5.10310 5.13141 5.14211 5.26779 5.28563 5.31921 5.64032 5.72263
5.73561 5.91602 6.03139 6.06313 6.17994 6.46874 6.81844 6.99296
7.09206 7.79830 8.77303
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018721 B = 0.002093 C = 0.002024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1495.295745 B =13373.350160 C =13833.853835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C -0.024 4.024
3 Si 1.017 2.983
4 H -0.249 1.249
5 H -0.269 1.269
6 H -0.272 1.272
7 C -0.410 4.410
8 H 0.104 0.896
9 O -0.232 6.232
10 C 0.113 3.887
11 C -0.232 4.232
12 C -0.069 4.069
13 C -0.167 4.167
14 C -0.059 4.059
15 C 0.173 3.827
16 N -0.701 5.701
17 C 0.549 3.451
18 O -0.566 6.566
19 C -0.040 4.040
20 C -0.155 4.155
21 C -0.092 4.092
22 C 0.048 3.952
23 N -0.612 5.612
24 C 0.370 3.630
25 N -0.580 5.580
26 C 0.172 3.828
27 C -0.248 4.248
28 C -0.180 4.180
29 H 0.272 0.728
30 H 0.120 0.880
31 H 0.149 0.851
32 H 0.148 0.852
33 H 0.064 0.936
34 H 0.089 0.911
35 H 0.414 0.586
36 H 0.080 0.920
37 H 0.085 0.915
38 H 0.087 0.913
39 H 0.090 0.910
40 H 0.434 0.566
41 H 0.227 0.773
42 H 0.166 0.834
43 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.499 -18.611 -10.312 22.248
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.221 4.221
3 Si 0.837 3.163
4 H -0.172 1.172
5 H -0.194 1.194
6 H -0.197 1.197
7 C -0.486 4.486
8 H 0.122 0.878
9 O -0.139 6.139
10 C 0.062 3.938
11 C -0.252 4.252
12 C -0.087 4.087
13 C -0.185 4.185
14 C -0.059 4.059
15 C 0.050 3.950
16 N -0.353 5.353
17 C 0.337 3.663
18 O -0.446 6.446
19 C -0.049 4.049
20 C -0.162 4.162
21 C -0.131 4.131
22 C -0.083 4.083
23 N -0.340 5.340
24 C 0.101 3.899
25 N -0.197 5.197
26 C 0.046 3.954
27 C -0.274 4.274
28 C -0.200 4.200
29 H 0.081 0.919
30 H 0.138 0.862
31 H 0.167 0.833
32 H 0.166 0.834
33 H 0.083 0.917
34 H 0.108 0.892
35 H 0.252 0.748
36 H 0.099 0.901
37 H 0.103 0.897
38 H 0.105 0.895
39 H 0.108 0.892
40 H 0.273 0.727
41 H 0.243 0.757
42 H 0.183 0.817
43 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 5.441 -19.703 -10.118 22.808
hybrid contribution 0.069 1.640 0.454 1.703
sum 5.510 -18.063 -9.665 21.215
Atomic orbital electron populations
1.70192 1.08053 1.28670 1.49033 1.26568 0.96803 1.02756 0.96003
0.84542 0.78396 0.74973 0.78406 1.17215 1.19432 1.19731 1.21857
0.92547 0.81319 1.52880 0.87827 1.83952 1.35952 1.12571 1.81420
1.19847 0.91636 0.87809 0.94465 1.21377 0.92971 1.00414 1.10428
1.21157 1.00429 0.91090 0.95992 1.20993 0.92981 0.98310 1.06258
1.19392 0.93960 0.92351 1.00214 1.20087 0.99899 0.90525 0.84472
1.45883 1.59805 1.19709 1.09920 1.18694 0.77483 0.81083 0.89059
1.90742 1.52127 1.61383 1.40343 1.19456 0.98054 0.93783 0.93584
1.21568 1.02654 0.96487 0.95475 1.21364 1.00836 0.94165 0.96705
1.22723 1.01635 0.97921 0.86031 1.73984 1.25199 1.12291 1.22523
1.19740 0.92568 0.91279 0.86342 1.41247 1.52681 1.17355 1.08368
1.22403 0.89018 0.83276 1.00724 1.20701 1.12602 1.04156 0.89944
1.20213 0.99389 0.90167 1.10223 0.91931 0.86195 0.83349 0.83403
0.91736 0.89239 0.74800 0.90130 0.89668 0.89522 0.89201 0.72714
0.75710 0.81677 0.87511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -55.36 13.67 21.61 0.30 -55.06 16
2 C -0.02 -1.32 5.49 84.84 0.47 -0.85 16
3 Si 1.02 41.41 29.55 68.60 2.03 43.43 16
4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16
5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16
6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16
7 C -0.41 -22.86 9.49 67.92 0.64 -22.21 16
8 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16
9 O -0.23 -13.35 9.76 -22.76 -0.22 -13.57 16
10 C 0.11 5.20 6.65 22.58 0.15 5.35 16
11 C -0.23 -9.13 9.17 22.39 0.21 -8.93 16
12 C -0.07 -2.02 10.04 22.25 0.22 -1.80 16
13 C -0.17 -4.40 9.70 22.30 0.22 -4.18 16
14 C -0.06 -1.74 5.25 -19.88 -0.10 -1.85 16
15 C 0.17 4.49 5.80 85.63 0.50 4.99 16
16 N -0.70 -16.14 5.51 -469.31 -2.58 -18.72 16
17 C 0.55 14.36 7.79 86.90 0.68 15.04 16
18 O -0.57 -18.52 15.33 -3.75 -0.06 -18.57 16
19 C -0.04 -0.87 5.86 -20.16 -0.12 -0.99 16
20 C -0.15 -3.65 6.12 -19.22 -0.12 -3.77 16
21 C -0.09 -2.20 5.54 30.44 0.17 -2.03 16
22 C 0.05 1.03 7.96 86.74 0.69 1.72 16
23 N -0.61 -14.61 11.60 -342.80 -3.98 -18.58 16
24 C 0.37 7.71 8.18 134.27 1.10 8.81 16
25 N -0.58 -6.65 5.39 -192.31 -1.04 -7.68 16
26 C 0.17 1.26 11.14 83.22 0.93 2.19 16
27 C -0.25 -3.29 9.50 22.33 0.21 -3.08 16
28 C -0.18 -7.05 9.65 22.39 0.22 -6.83 16
29 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16
30 H 0.12 4.83 5.64 -2.91 -0.02 4.82 16
31 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16
32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16
33 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16
34 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16
35 H 0.41 7.82 6.55 -92.71 -0.61 7.22 16
36 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16
37 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16
38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16
40 H 0.43 2.54 8.92 -92.70 -0.83 1.71 16
41 H 0.23 -0.75 8.06 -2.91 -0.02 -0.78 16
42 H 0.17 1.54 6.48 -2.91 -0.02 1.52 16
43 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16
Total: -1.00 -79.97 367.46 0.15 -79.82
By element:
Atomic # 1 Polarization: 27.70 SS G_CDS: -0.34 Total: 27.35 kcal
Atomic # 6 Polarization: -24.46 SS G_CDS: 6.05 Total: -18.40 kcal
Atomic # 7 Polarization: -92.75 SS G_CDS: -7.30 Total: -100.05 kcal
Atomic # 8 Polarization: -31.87 SS G_CDS: -0.28 Total: -32.15 kcal
Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal
Total: -79.97 0.15 -79.82 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001580051900.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.553 kcal
(2) G-P(sol) polarization free energy of solvation -79.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.818 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.735 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds