Wall clock time and date at job start Tue Mar 31 2020 22:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48508 * 109.47081 * 239.99794 * 3 2 1 5 5 H 1.48499 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47464 * 120.00012 * 3 2 1 7 7 C 1.37874 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00121 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47504 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99840 * 179.97438 * 10 9 7 12 12 O 1.21580 * 120.00119 * 0.02562 * 11 10 9 13 13 C 1.47601 * 119.99496 * 179.97438 * 11 10 9 14 14 C 1.39755 * 120.06941 * 180.02562 * 13 11 10 15 15 C 1.37664 * 119.92426 * 180.02562 * 14 13 11 16 16 C 1.39137 * 120.07311 * 0.02562 * 15 14 13 17 17 N 1.39438 * 119.92496 * 179.97438 * 16 15 14 18 18 C 1.34774 * 119.99820 * 146.56913 * 17 16 15 19 19 O 1.21278 * 120.00340 * 354.72990 * 18 17 16 20 20 C 1.50701 * 120.00060 * 174.45147 * 18 17 16 21 21 C 1.50704 * 109.47382 * 180.27841 * 20 18 17 22 22 C 1.38668 * 120.41766 * 269.72110 * 21 20 18 23 23 C 1.38631 * 118.42198 * 179.78210 * 22 21 20 24 24 C 1.38222 * 119.15703 * 0.51127 * 23 22 21 25 25 N 1.31862 * 120.76793 * 359.73109 * 24 23 22 26 26 C 1.31884 * 121.72215 * 359.97438 * 25 24 23 27 27 C 1.39134 * 120.14943 * 0.25187 * 16 15 14 28 28 C 1.37671 * 120.06974 * 359.44648 * 27 16 15 29 29 H 0.97004 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47079 * 59.99475 * 9 7 2 31 31 H 1.09010 * 109.46639 * 299.99838 * 9 7 2 32 32 H 0.96995 * 119.99849 * 359.97438 * 10 9 7 33 33 H 1.07997 * 120.03836 * 359.97438 * 14 13 11 34 34 H 1.07996 * 119.96481 * 179.97438 * 15 14 13 35 35 H 0.96995 * 120.00564 * 326.57698 * 17 16 15 36 36 H 1.09004 * 109.46923 * 300.28000 * 20 18 17 37 37 H 1.08999 * 109.47063 * 60.27922 * 20 18 17 38 38 H 1.08007 * 120.79248 * 0.02562 * 22 21 20 39 39 H 1.08001 * 120.42183 * 180.22023 * 23 22 21 40 40 H 1.08000 * 119.61957 * 179.74925 * 24 23 22 41 41 H 1.08000 * 119.61664 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.96109 * 179.73010 * 27 16 15 43 43 H 1.07996 * 120.03558 * 180.27524 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5583 -5.1055 0.0011 13 6 2.7128 -6.0052 0.0005 14 6 2.2486 -7.3234 0.0005 15 6 3.1459 -8.3675 0.0005 16 6 4.5135 -8.1115 0.0010 17 7 5.4196 -9.1713 0.0016 18 6 6.5982 -9.0506 -0.6410 19 8 6.8314 -8.0589 -1.2990 20 6 7.6288 -10.1452 -0.5368 21 6 8.8487 -9.7642 -1.3354 22 6 8.9536 -10.1224 -2.6710 23 6 10.0918 -9.7466 -3.3675 24 6 11.0820 -9.0417 -2.7094 25 7 10.9505 -8.7224 -1.4368 26 6 9.8793 -9.0582 -0.7447 27 6 4.9790 -6.8003 0.0069 28 6 4.0871 -5.7516 0.0006 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 3.1566 -3.4354 0.0002 33 1 1.1872 -7.5228 0.0013 34 1 2.7879 -9.3864 0.0009 35 1 5.2018 -9.9955 0.4642 36 1 7.9071 -10.2838 0.5079 37 1 7.2135 -11.0737 -0.9285 38 1 8.1655 -10.6776 -3.1581 39 1 10.2054 -10.0055 -4.4098 40 1 11.9736 -8.7487 -3.2438 41 1 9.8069 -8.7787 0.2960 42 1 6.0412 -6.6051 0.0117 43 1 4.4491 -4.7341 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626390931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:28 Heat of formation + Delta-G solvation = -10.697955 kcal Electronic energy + Delta-G solvation = -26797.796197 eV Core-core repulsion = 22807.731433 eV Total energy + Delta-G solvation = -3990.064764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15384 -40.31096 -39.30005 -37.76655 -35.01141 -34.25153 -34.08022 -32.41778 -32.32734 -30.96997 -30.30381 -28.36231 -27.05479 -24.19687 -23.98656 -22.96062 -22.89174 -22.05223 -20.65607 -19.83462 -18.27831 -17.79856 -17.45694 -17.37569 -16.93695 -15.94701 -15.79606 -15.56165 -15.20441 -14.77404 -14.67617 -14.40304 -14.32557 -14.09257 -13.90974 -13.70890 -13.50148 -13.46461 -13.13612 -12.99366 -12.58194 -12.34405 -12.03544 -11.94369 -11.79998 -11.29044 -10.98388 -10.86707 -10.61769 -10.32636 -10.30179 -10.13164 -9.84640 -9.40409 -9.39700 -9.16618 -9.02051 -8.72487 -8.30191 -7.84435 -6.15091 -4.22076 0.65810 0.85002 0.89835 1.38309 2.13643 2.61211 3.27381 3.29366 3.31947 3.33628 3.44266 3.92215 4.06796 4.15068 4.17688 4.28812 4.34581 4.38574 4.52263 4.56366 4.78136 4.81232 4.88519 4.91339 5.17883 5.20997 5.25587 5.32984 5.35929 5.37019 5.48212 5.68059 5.77713 5.95995 6.10318 6.13085 6.28245 6.35793 6.47270 6.86130 6.95970 7.31730 7.41686 7.52461 7.58915 7.67340 7.68253 7.97803 8.61211 8.77940 9.07042 9.44206 10.95041 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.002037 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.062634 B =13744.131544 C =15500.918603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.705 5.705 11 C 0.539 3.461 12 O -0.554 6.554 13 C -0.134 4.134 14 C -0.045 4.045 15 C -0.154 4.154 16 C 0.156 3.844 17 N -0.673 5.673 18 C 0.511 3.489 19 O -0.504 6.504 20 C -0.095 4.095 21 C -0.123 4.123 22 C -0.060 4.060 23 C -0.171 4.171 24 C 0.099 3.901 25 N -0.484 5.484 26 C 0.115 3.885 27 C -0.128 4.128 28 C -0.068 4.068 29 H 0.266 0.734 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.390 0.610 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.411 0.589 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.136 0.864 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.383 -27.176 -1.374 33.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.353 5.353 11 C 0.325 3.675 12 O -0.435 6.435 13 C -0.137 4.137 14 C -0.065 4.065 15 C -0.175 4.175 16 C 0.062 3.938 17 N -0.318 5.318 18 C 0.298 3.702 19 O -0.377 6.377 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.086 4.086 23 C -0.191 4.191 24 C -0.058 4.058 25 N -0.192 5.192 26 C -0.042 4.042 27 C -0.148 4.148 28 C -0.087 4.087 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.224 0.776 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.247 0.753 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.154 0.846 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.266 -25.981 -1.446 32.377 hybrid contribution 0.024 0.134 -0.279 0.311 sum 19.290 -25.847 -1.725 32.298 Atomic orbital electron populations 1.69963 1.06093 1.27421 1.48771 1.24945 0.94931 0.99443 0.94665 0.86466 0.79413 0.82256 0.78732 1.20041 1.21059 1.20038 1.21181 0.93246 0.90426 1.53407 0.91931 1.19154 0.88281 0.81799 0.97926 1.46437 1.11273 1.06029 1.71514 1.18180 0.87966 0.83305 0.78050 1.90728 1.16209 1.84964 1.51563 1.20314 0.93652 0.94658 1.05116 1.21077 1.00423 0.90591 0.94376 1.20791 0.90847 0.99710 1.06134 1.17814 0.88781 0.87613 0.99639 1.43423 1.17266 1.17178 1.53923 1.20716 0.82168 0.88642 0.78702 1.90803 1.77569 1.31178 1.38201 1.20583 0.92180 0.98118 1.02703 1.20232 0.96217 1.00905 0.95188 1.21448 0.97230 0.96768 0.93184 1.22138 0.95059 1.00406 1.01473 1.22815 0.98473 0.93921 0.90568 1.67713 1.24028 1.18986 1.08433 1.22620 0.88626 0.92945 1.00017 1.20993 1.00770 0.90595 1.02444 1.21292 0.91928 0.99479 0.96007 0.92382 0.95310 0.95277 0.77586 0.84218 0.85303 0.75261 0.86985 0.87308 0.84939 0.84626 0.82688 0.82951 0.84614 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 10 N -0.70 -15.54 5.50 -62.51 -0.34 -15.88 16 11 C 0.54 11.47 7.76 -12.44 -0.10 11.37 16 12 O -0.55 -13.73 16.34 5.30 0.09 -13.65 16 13 C -0.13 -2.21 5.88 -104.95 -0.62 -2.83 16 14 C -0.05 -0.64 9.58 -39.22 -0.38 -1.01 16 15 C -0.15 -1.66 9.94 -39.46 -0.39 -2.06 16 16 C 0.16 1.70 6.27 -83.73 -0.53 1.17 16 17 N -0.67 -4.79 5.32 -9.86 -0.05 -4.84 16 18 C 0.51 4.20 7.55 -10.99 -0.08 4.12 16 19 O -0.50 -6.57 13.72 5.56 0.08 -6.49 16 20 C -0.10 -0.41 5.86 -29.03 -0.17 -0.58 16 21 C -0.12 -0.88 4.39 -104.48 -0.46 -1.33 16 22 C -0.06 -0.41 9.86 -39.28 -0.39 -0.80 16 23 C -0.17 -1.15 10.11 -39.44 -0.40 -1.55 16 24 C 0.10 0.79 11.18 -17.54 -0.20 0.59 16 25 N -0.48 -4.83 10.36 -13.25 -0.14 -4.97 16 26 C 0.12 0.98 10.86 -17.55 -0.19 0.79 16 27 C -0.13 -1.66 8.63 -39.46 -0.34 -2.00 16 28 C -0.07 -0.98 9.53 -39.23 -0.37 -1.35 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.39 7.46 6.34 -40.82 -0.26 7.20 16 33 H 0.14 1.97 7.64 -52.49 -0.40 1.57 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.41 1.30 8.81 -40.82 -0.36 0.94 16 36 H 0.11 0.20 8.09 -51.93 -0.42 -0.22 16 37 H 0.11 0.18 8.09 -51.93 -0.42 -0.24 16 38 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.14 1.77 6.42 -52.49 -0.34 1.44 16 43 H 0.13 1.78 6.39 -52.49 -0.34 1.44 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -37.75 377.23 -9.05 -46.80 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.03 Total: 5.18 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -5.05 Total: -2.40 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.20 Total: -51.26 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.16 Total: -20.14 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.75 -9.05 -46.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626390931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.102 kcal (2) G-P(sol) polarization free energy of solvation -37.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds