Wall clock time and date at job start Tue Mar 31 2020 22:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00055 * 2 1 4 4 H 1.48508 * 109.47081 * 239.99794 * 3 2 1 5 5 H 1.48499 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47464 * 120.00012 * 3 2 1 7 7 C 1.37874 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00121 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47504 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99840 * 179.97438 * 10 9 7 12 12 O 1.21580 * 120.00119 * 0.02562 * 11 10 9 13 13 C 1.47601 * 119.99496 * 179.97438 * 11 10 9 14 14 C 1.39755 * 120.06941 * 180.02562 * 13 11 10 15 15 C 1.37664 * 119.92426 * 180.02562 * 14 13 11 16 16 C 1.39137 * 120.07311 * 0.02562 * 15 14 13 17 17 N 1.39438 * 119.92496 * 179.97438 * 16 15 14 18 18 C 1.34774 * 119.99820 * 146.56913 * 17 16 15 19 19 O 1.21278 * 120.00340 * 354.72990 * 18 17 16 20 20 C 1.50701 * 120.00060 * 174.45147 * 18 17 16 21 21 C 1.50704 * 109.47382 * 180.27841 * 20 18 17 22 22 C 1.38668 * 120.41766 * 269.72110 * 21 20 18 23 23 C 1.38631 * 118.42198 * 179.78210 * 22 21 20 24 24 C 1.38222 * 119.15703 * 0.51127 * 23 22 21 25 25 N 1.31862 * 120.76793 * 359.73109 * 24 23 22 26 26 C 1.31884 * 121.72215 * 359.97438 * 25 24 23 27 27 C 1.39134 * 120.14943 * 0.25187 * 16 15 14 28 28 C 1.37671 * 120.06974 * 359.44648 * 27 16 15 29 29 H 0.97004 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47079 * 59.99475 * 9 7 2 31 31 H 1.09010 * 109.46639 * 299.99838 * 9 7 2 32 32 H 0.96995 * 119.99849 * 359.97438 * 10 9 7 33 33 H 1.07997 * 120.03836 * 359.97438 * 14 13 11 34 34 H 1.07996 * 119.96481 * 179.97438 * 15 14 13 35 35 H 0.96995 * 120.00564 * 326.57698 * 17 16 15 36 36 H 1.09004 * 109.46923 * 300.28000 * 20 18 17 37 37 H 1.08999 * 109.47063 * 60.27922 * 20 18 17 38 38 H 1.08007 * 120.79248 * 0.02562 * 22 21 20 39 39 H 1.08001 * 120.42183 * 180.22023 * 23 22 21 40 40 H 1.08000 * 119.61957 * 179.74925 * 24 23 22 41 41 H 1.08000 * 119.61664 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.96109 * 179.73010 * 27 16 15 43 43 H 1.07996 * 120.03558 * 180.27524 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5583 -5.1055 0.0011 13 6 2.7128 -6.0052 0.0005 14 6 2.2486 -7.3234 0.0005 15 6 3.1459 -8.3675 0.0005 16 6 4.5135 -8.1115 0.0010 17 7 5.4196 -9.1713 0.0016 18 6 6.5982 -9.0506 -0.6410 19 8 6.8314 -8.0589 -1.2990 20 6 7.6288 -10.1452 -0.5368 21 6 8.8487 -9.7642 -1.3354 22 6 8.9536 -10.1224 -2.6710 23 6 10.0918 -9.7466 -3.3675 24 6 11.0820 -9.0417 -2.7094 25 7 10.9505 -8.7224 -1.4368 26 6 9.8793 -9.0582 -0.7447 27 6 4.9790 -6.8003 0.0069 28 6 4.0871 -5.7516 0.0006 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8904 32 1 3.1566 -3.4354 0.0002 33 1 1.1872 -7.5228 0.0013 34 1 2.7879 -9.3864 0.0009 35 1 5.2018 -9.9955 0.4642 36 1 7.9071 -10.2838 0.5079 37 1 7.2135 -11.0737 -0.9285 38 1 8.1655 -10.6776 -3.1581 39 1 10.2054 -10.0055 -4.4098 40 1 11.9736 -8.7487 -3.2438 41 1 9.8069 -8.7787 0.2960 42 1 6.0412 -6.6051 0.0117 43 1 4.4491 -4.7341 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626390931.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:27 Heat of formation + Delta-G solvation = -38.191878 kcal Electronic energy + Delta-G solvation = -26798.988423 eV Core-core repulsion = 22807.731433 eV Total energy + Delta-G solvation = -3991.256990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87435 -41.09971 -40.55560 -38.98733 -36.24275 -35.89593 -34.60218 -34.42133 -32.84190 -32.06431 -31.37189 -29.42829 -28.56300 -25.53647 -24.50523 -24.24702 -23.95631 -23.13986 -21.58030 -21.25441 -19.56919 -18.89158 -18.18841 -17.96298 -17.82039 -17.46542 -17.14208 -16.55119 -16.19649 -16.12263 -16.07374 -15.71582 -15.31200 -15.20705 -14.79012 -14.45971 -14.43877 -14.22818 -14.18912 -14.01740 -13.92999 -13.67980 -13.58800 -13.08775 -12.96957 -12.70743 -12.45327 -12.33134 -12.25433 -11.54655 -11.50143 -11.14831 -10.91608 -10.82284 -10.68869 -10.38964 -10.04540 -9.94573 -9.90672 -9.19615 -8.31225 -6.48246 -0.26653 0.15284 0.35954 0.38556 1.41283 1.42584 1.45702 1.53811 1.92126 2.02407 2.29048 2.52589 2.86690 2.90794 3.03378 3.49032 3.67350 3.76395 3.82117 3.92062 3.94329 3.97014 4.09275 4.13835 4.28226 4.41393 4.49352 4.50637 4.59198 4.79235 4.89161 4.94491 5.03986 5.11875 5.17438 5.19937 5.20526 5.30035 5.33862 5.38391 5.43393 5.64662 5.80687 5.80923 5.89042 6.38811 6.60526 6.81761 7.05413 7.10184 7.19129 7.37279 8.80763 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.002037 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.062634 B =13744.131544 C =15500.918603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.266 3.734 10 N -0.703 5.703 11 C 0.538 3.462 12 O -0.599 6.599 13 C -0.164 4.164 14 C -0.049 4.049 15 C -0.138 4.138 16 C 0.175 3.825 17 N -0.655 5.655 18 C 0.512 3.488 19 O -0.555 6.555 20 C -0.084 4.084 21 C -0.128 4.128 22 C -0.071 4.071 23 C -0.175 4.175 24 C 0.079 3.921 25 N -0.520 5.520 26 C 0.093 3.907 27 C -0.137 4.137 28 C -0.067 4.067 29 H 0.270 0.730 30 H -0.010 1.010 31 H -0.008 1.008 32 H 0.405 0.595 33 H 0.134 0.866 34 H 0.174 0.826 35 H 0.436 0.564 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.655 -29.712 -1.305 36.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.099 0.901 9 C 0.143 3.857 10 N -0.352 5.352 11 C 0.327 3.673 12 O -0.483 6.483 13 C -0.167 4.167 14 C -0.069 4.069 15 C -0.158 4.158 16 C 0.079 3.921 17 N -0.302 5.302 18 C 0.302 3.698 19 O -0.432 6.432 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.097 4.097 23 C -0.194 4.194 24 C -0.078 4.078 25 N -0.229 5.229 26 C -0.064 4.064 27 C -0.157 4.157 28 C -0.087 4.087 29 H 0.079 0.921 30 H 0.008 0.992 31 H 0.010 0.990 32 H 0.242 0.758 33 H 0.152 0.848 34 H 0.191 0.809 35 H 0.276 0.724 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.187 0.813 41 H 0.180 0.820 42 H 0.154 0.846 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.585 -28.594 -1.352 35.852 hybrid contribution -0.620 0.742 -0.329 1.022 sum 20.965 -27.851 -1.681 34.900 Atomic orbital electron populations 1.70124 1.08180 1.28709 1.49622 1.26063 0.95843 1.03855 0.93730 0.85200 0.77943 0.76563 0.79472 1.18822 1.20772 1.18619 1.21555 0.94210 0.90587 1.53396 0.90070 1.18611 0.88620 0.84029 0.94418 1.46177 1.11264 1.05556 1.72222 1.18953 0.88310 0.83915 0.76123 1.90683 1.18480 1.85620 1.53499 1.19913 0.93279 0.93710 1.09837 1.21182 1.00993 0.90406 0.94318 1.21084 0.90017 1.00718 1.03962 1.17921 0.89616 0.87943 0.96622 1.43372 1.16305 1.17052 1.53517 1.21443 0.82398 0.88693 0.77312 1.90804 1.78405 1.33492 1.40476 1.20681 0.89654 0.97597 1.04465 1.20511 0.96727 1.00135 0.95646 1.21861 0.97738 0.96744 0.93376 1.22451 0.94737 0.99646 1.02591 1.23178 0.99685 0.94505 0.90394 1.67668 1.25328 1.20283 1.09589 1.22940 0.89071 0.93674 1.00726 1.21048 1.00387 0.91359 1.02943 1.21275 0.91176 1.00306 0.95931 0.92127 0.99164 0.98959 0.75824 0.84768 0.80860 0.72374 0.83810 0.83569 0.82720 0.82387 0.81283 0.82012 0.84649 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.99 43.47 29.54 68.60 2.03 45.50 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.56 -31.65 9.28 25.60 0.24 -31.41 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 15.30 5.43 85.63 0.46 15.77 16 10 N -0.70 -32.66 5.50 -469.93 -2.58 -35.25 16 11 C 0.54 24.12 7.76 86.71 0.67 24.79 16 12 O -0.60 -31.64 16.34 -3.97 -0.06 -31.71 16 13 C -0.16 -5.50 5.88 -20.07 -0.12 -5.62 16 14 C -0.05 -1.35 9.58 22.50 0.22 -1.13 16 15 C -0.14 -2.49 9.94 22.35 0.22 -2.27 16 16 C 0.18 3.23 6.27 38.36 0.24 3.48 16 17 N -0.66 -6.32 5.32 -303.49 -1.61 -7.93 16 18 C 0.51 6.50 7.55 87.66 0.66 7.16 16 19 O -0.56 -13.28 13.72 -3.02 -0.04 -13.32 16 20 C -0.08 -0.33 5.86 29.10 0.17 -0.16 16 21 C -0.13 -1.48 4.39 -19.77 -0.09 -1.57 16 22 C -0.07 -0.79 9.86 22.47 0.22 -0.57 16 23 C -0.17 -2.07 10.11 22.36 0.23 -1.84 16 24 C 0.08 1.21 11.18 84.68 0.95 2.16 16 25 N -0.52 -10.27 10.36 -195.84 -2.03 -12.30 16 26 C 0.09 1.47 10.86 84.67 0.92 2.39 16 27 C -0.14 -3.35 8.63 22.35 0.19 -3.15 16 28 C -0.07 -1.94 9.53 22.50 0.21 -1.73 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 32 H 0.41 16.05 6.34 -92.71 -0.59 15.46 16 33 H 0.13 3.78 7.64 -2.91 -0.02 3.76 16 34 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.44 0.17 8.81 -92.71 -0.82 -0.65 16 36 H 0.14 -0.26 8.09 -2.39 -0.02 -0.28 16 37 H 0.15 -0.43 8.09 -2.39 -0.02 -0.45 16 38 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 40 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 41 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.14 3.37 6.42 -2.91 -0.02 3.36 16 43 H 0.13 3.64 6.39 -2.91 -0.02 3.63 16 Total: -1.00 -88.70 377.23 1.51 -87.19 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -0.33 Total: 17.50 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.86 Total: 7.02 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -5.94 Total: -112.19 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.11 Total: -45.03 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -88.70 1.51 -87.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626390931.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.000 kcal (2) G-P(sol) polarization free energy of solvation -88.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds