Wall clock time and date at job start Tue Mar 31 2020 22:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99840 * 2 1 4 4 H 1.48503 * 109.46873 * 269.99627 * 3 2 1 5 5 H 1.48496 * 109.47621 * 29.99813 * 3 2 1 6 6 H 1.48503 * 109.47193 * 149.99897 * 3 2 1 7 7 C 1.37874 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47438 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47176 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00160 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99616 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00015 * 180.02562 * 13 12 11 16 16 C 1.50700 * 109.46819 * 180.02562 * 15 13 12 17 17 C 1.33320 * 122.71144 * 85.02442 * 16 15 13 18 18 S 1.76169 * 108.09587 * 179.97438 * 17 16 15 19 19 C 1.70961 * 90.35591 * 359.97438 * 18 17 16 20 20 N 1.38609 * 124.95151 * 179.97438 * 19 18 17 21 21 C 1.47010 * 111.00231 * 123.66257 * 20 19 18 22 22 C 1.53098 * 109.25946 * 177.61284 * 21 20 19 23 23 O 1.43007 * 109.26277 * 56.84713 * 22 21 20 24 24 C 1.43023 * 113.73543 * 301.33034 * 23 22 21 25 25 C 1.47011 * 110.99994 * 0.02562 * 20 19 18 26 26 N 1.29689 * 110.10144 * 0.02562 * 19 18 17 27 27 H 0.97000 * 119.99508 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46917 * 59.99691 * 9 7 2 29 29 H 1.09002 * 109.47265 * 300.00076 * 9 7 2 30 30 H 1.09004 * 109.47065 * 60.00093 * 10 9 7 31 31 H 1.09002 * 109.47209 * 300.00422 * 10 9 7 32 32 H 1.09000 * 109.47070 * 60.00623 * 11 10 9 33 33 H 1.09002 * 109.47450 * 300.00341 * 11 10 9 34 34 H 0.97002 * 120.00063 * 0.02562 * 12 11 10 35 35 H 1.09000 * 109.46960 * 60.00065 * 15 13 12 36 36 H 1.09002 * 109.47067 * 300.00085 * 15 13 12 37 37 H 1.08003 * 125.95439 * 359.97438 * 17 16 15 38 38 H 1.09004 * 109.50416 * 297.54350 * 21 20 19 39 39 H 1.09000 * 109.50914 * 57.67199 * 21 20 19 40 40 H 1.09001 * 109.50441 * 296.90595 * 22 21 20 41 41 H 1.09007 * 109.54068 * 176.80798 * 22 21 20 42 42 H 1.08995 * 109.50642 * 298.73257 * 24 23 22 43 43 H 1.09000 * 109.54197 * 178.62532 * 24 23 22 44 44 H 1.09003 * 109.51024 * 302.33198 * 25 20 19 45 45 H 1.09004 * 109.50567 * 62.45899 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0005 14 8 0.7905 -7.5929 0.0004 15 6 2.9622 -8.5168 0.0004 16 6 2.2087 -9.8218 -0.0004 17 6 1.7646 -10.3967 -1.1183 18 16 0.9460 -11.8928 -0.6763 19 6 1.2813 -11.6010 0.9745 20 7 0.9073 -12.4313 2.0195 21 6 2.0761 -12.8392 2.8126 22 6 1.6121 -13.7040 3.9876 23 8 0.8791 -14.8255 3.4875 24 6 -0.2664 -14.4646 2.7110 25 6 0.1785 -13.6075 1.5230 26 7 1.9356 -10.4891 1.1067 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8906 31 1 2.8720 -3.6043 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8538 -5.0446 0.8914 34 1 3.3859 -5.9234 0.0002 35 1 3.5889 -8.4591 0.8904 36 1 3.5890 -8.4589 -0.8896 37 1 1.8855 -10.0122 -2.1203 38 1 2.7589 -13.4129 2.1858 39 1 2.5859 -11.9535 3.1915 40 1 0.9720 -13.1138 4.6434 41 1 2.4795 -14.0559 4.5462 42 1 -0.9612 -13.8966 3.3296 43 1 -0.7580 -15.3662 2.3455 44 1 -0.6968 -13.2827 0.9604 45 1 0.8311 -14.1935 0.8756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633134505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:56 Heat of formation + Delta-G solvation = -36.368472 kcal Electronic energy + Delta-G solvation = -25780.033885 eV Core-core repulsion = 21924.299915 eV Total energy + Delta-G solvation = -3855.733970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83776 -39.93521 -38.89346 -36.40232 -35.36054 -33.31996 -32.12706 -31.85464 -31.04332 -28.75182 -27.80852 -26.49725 -24.86471 -23.96471 -22.90738 -21.30908 -20.76440 -20.29730 -19.58905 -18.61681 -17.09470 -16.96914 -16.66289 -16.43321 -15.92280 -15.70709 -15.63417 -15.41206 -15.37012 -15.08212 -14.47280 -14.14003 -14.08266 -13.99152 -13.44090 -13.22549 -12.94757 -12.44580 -12.28368 -12.19525 -12.04600 -11.84137 -11.68116 -11.50212 -11.29216 -10.90493 -10.74092 -10.71481 -10.59895 -10.20195 -9.92031 -9.86691 -9.77054 -9.47111 -9.30455 -9.11360 -8.76840 -8.42922 -8.37394 -6.01952 -4.05150 0.52956 0.94341 1.44507 2.46716 2.70296 2.79769 3.27085 3.30543 3.36892 3.39557 3.53249 4.09662 4.20758 4.31671 4.44076 4.45038 4.54077 4.64655 4.77934 4.88830 5.02325 5.04459 5.07555 5.13909 5.21043 5.28164 5.32570 5.33740 5.46907 5.69664 5.77488 5.78678 5.94055 6.16729 6.25157 6.49213 6.51661 6.60190 6.83651 7.00466 7.57292 7.63378 7.71055 7.75972 7.96785 8.36791 8.41534 9.01548 9.59013 11.09311 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.001647 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.511168 B =16991.412035 C =17355.635177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.117 3.883 12 N -0.726 5.726 13 C 0.511 3.489 14 O -0.535 6.535 15 C -0.069 4.069 16 C 0.114 3.886 17 C -0.253 4.253 18 S 0.094 5.906 19 C 0.229 3.771 20 N -0.440 5.440 21 C 0.026 3.974 22 C 0.062 3.938 23 O -0.382 6.382 24 C 0.068 3.932 25 C 0.005 3.995 26 N -0.483 5.483 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.177 0.823 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -33.109 1.911 33.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.377 5.377 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.112 4.112 16 C -0.018 4.018 17 C -0.393 4.393 18 S 0.345 5.655 19 C -0.141 4.141 20 N -0.161 5.161 21 C -0.102 4.102 22 C -0.015 4.015 23 O -0.300 6.300 24 C -0.009 4.009 25 C -0.123 4.123 26 N -0.202 5.202 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.194 0.806 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.118 0.882 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.050 -33.734 2.293 34.054 hybrid contribution 1.567 1.997 -0.606 2.609 sum 5.617 -31.738 1.687 32.275 Atomic orbital electron populations 1.69972 1.06060 1.26681 1.50538 1.25039 0.94869 0.99325 0.95288 0.86573 0.79791 0.83415 0.78078 1.20668 1.21205 1.19897 1.21203 0.92992 0.90940 1.50943 0.92630 1.19034 0.93876 0.90883 0.97662 1.21886 0.99752 0.93324 1.00877 1.21637 0.91873 0.85065 1.01953 1.46165 1.10821 1.05739 1.75008 1.20295 0.89509 0.83830 0.76766 1.90730 1.16794 1.84685 1.48970 1.20222 0.97146 0.88003 1.05836 1.19198 0.99796 0.96523 0.86268 1.26432 1.08247 1.00536 1.04075 1.83910 1.56665 1.22649 1.02324 1.25062 1.00209 0.95719 0.93119 1.58531 1.23572 1.16359 1.17640 1.23002 0.90311 1.01152 0.95701 1.22775 0.96980 0.87398 0.94348 1.88022 1.40916 1.31386 1.69709 1.22659 0.88290 0.99113 0.90861 1.23151 0.99909 0.90226 0.99004 1.66115 1.18120 1.04866 1.31124 0.92930 0.96298 0.96266 0.92698 0.92707 0.91834 0.91834 0.76755 0.87046 0.87087 0.80596 0.92496 0.87581 0.91505 0.87403 0.91433 0.87290 0.88170 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 12 N -0.73 -10.24 5.56 -60.29 -0.33 -10.58 16 13 C 0.51 7.60 7.82 -10.98 -0.09 7.52 16 14 O -0.54 -10.48 16.03 5.55 0.09 -10.39 16 15 C -0.07 -0.73 6.11 -29.04 -0.18 -0.91 16 16 C 0.11 1.43 5.23 -84.19 -0.44 0.99 16 17 C -0.25 -2.80 11.11 29.01 0.32 -2.48 16 18 S 0.09 0.91 21.18 -107.50 -2.28 -1.36 16 19 C 0.23 2.65 6.81 -87.68 -0.60 2.06 16 20 N -0.44 -4.25 4.79 -175.07 -0.84 -5.09 16 21 C 0.03 0.21 5.55 -3.71 -0.02 0.18 16 22 C 0.06 0.40 7.01 37.21 0.26 0.66 16 23 O -0.38 -2.88 10.83 -35.23 -0.38 -3.26 16 24 C 0.07 0.39 7.01 37.21 0.26 0.66 16 25 C 0.01 0.04 4.67 -3.71 -0.02 0.02 16 26 N -0.48 -6.51 10.27 -11.37 -0.12 -6.63 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.40 4.31 8.47 -40.82 -0.35 3.96 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.90 7.92 -51.93 -0.41 0.49 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.10 0.64 7.65 -51.93 -0.40 0.24 16 45 H 0.07 0.42 7.88 -51.93 -0.41 0.01 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -36.13 386.49 -10.55 -46.68 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.02 Total: -0.77 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.21 Total: -4.73 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.55 Total: -48.50 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.29 Total: -13.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.28 Total: -1.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.13 -10.55 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633134505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.316 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds