Wall clock time and date at job start Tue Mar 31 2020 22:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99840 * 2 1 4 4 H 1.48503 * 109.46873 * 269.99627 * 3 2 1 5 5 H 1.48496 * 109.47621 * 29.99813 * 3 2 1 6 6 H 1.48503 * 109.47193 * 149.99897 * 3 2 1 7 7 C 1.37874 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47438 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47176 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00160 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99616 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00015 * 180.02562 * 13 12 11 16 16 C 1.50700 * 109.46819 * 180.02562 * 15 13 12 17 17 C 1.33320 * 122.71144 * 85.02442 * 16 15 13 18 18 S 1.76169 * 108.09587 * 179.97438 * 17 16 15 19 19 C 1.70961 * 90.35591 * 359.97438 * 18 17 16 20 20 N 1.38609 * 124.95151 * 179.97438 * 19 18 17 21 21 C 1.47010 * 111.00231 * 123.66257 * 20 19 18 22 22 C 1.53098 * 109.25946 * 177.61284 * 21 20 19 23 23 O 1.43007 * 109.26277 * 56.84713 * 22 21 20 24 24 C 1.43023 * 113.73543 * 301.33034 * 23 22 21 25 25 C 1.47011 * 110.99994 * 0.02562 * 20 19 18 26 26 N 1.29689 * 110.10144 * 0.02562 * 19 18 17 27 27 H 0.97000 * 119.99508 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46917 * 59.99691 * 9 7 2 29 29 H 1.09002 * 109.47265 * 300.00076 * 9 7 2 30 30 H 1.09004 * 109.47065 * 60.00093 * 10 9 7 31 31 H 1.09002 * 109.47209 * 300.00422 * 10 9 7 32 32 H 1.09000 * 109.47070 * 60.00623 * 11 10 9 33 33 H 1.09002 * 109.47450 * 300.00341 * 11 10 9 34 34 H 0.97002 * 120.00063 * 0.02562 * 12 11 10 35 35 H 1.09000 * 109.46960 * 60.00065 * 15 13 12 36 36 H 1.09002 * 109.47067 * 300.00085 * 15 13 12 37 37 H 1.08003 * 125.95439 * 359.97438 * 17 16 15 38 38 H 1.09004 * 109.50416 * 297.54350 * 21 20 19 39 39 H 1.09000 * 109.50914 * 57.67199 * 21 20 19 40 40 H 1.09001 * 109.50441 * 296.90595 * 22 21 20 41 41 H 1.09007 * 109.54068 * 176.80798 * 22 21 20 42 42 H 1.08995 * 109.50642 * 298.73257 * 24 23 22 43 43 H 1.09000 * 109.54197 * 178.62532 * 24 23 22 44 44 H 1.09003 * 109.51024 * 302.33198 * 25 20 19 45 45 H 1.09004 * 109.50567 * 62.45899 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0005 14 8 0.7905 -7.5929 0.0004 15 6 2.9622 -8.5168 0.0004 16 6 2.2087 -9.8218 -0.0004 17 6 1.7646 -10.3967 -1.1183 18 16 0.9460 -11.8928 -0.6763 19 6 1.2813 -11.6010 0.9745 20 7 0.9073 -12.4313 2.0195 21 6 2.0761 -12.8392 2.8126 22 6 1.6121 -13.7040 3.9876 23 8 0.8791 -14.8255 3.4875 24 6 -0.2664 -14.4646 2.7110 25 6 0.1785 -13.6075 1.5230 26 7 1.9356 -10.4891 1.1067 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8906 31 1 2.8720 -3.6043 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8538 -5.0446 0.8914 34 1 3.3859 -5.9234 0.0002 35 1 3.5889 -8.4591 0.8904 36 1 3.5890 -8.4589 -0.8896 37 1 1.8855 -10.0122 -2.1203 38 1 2.7589 -13.4129 2.1858 39 1 2.5859 -11.9535 3.1915 40 1 0.9720 -13.1138 4.6434 41 1 2.4795 -14.0559 4.5462 42 1 -0.9612 -13.8966 3.3296 43 1 -0.7580 -15.3662 2.3455 44 1 -0.6968 -13.2827 0.9604 45 1 0.8311 -14.1935 0.8756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633134505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:56 Heat of formation + Delta-G solvation = -63.157679 kcal Electronic energy + Delta-G solvation = -25781.195552 eV Core-core repulsion = 21924.299915 eV Total energy + Delta-G solvation = -3856.895637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60161 -40.83268 -39.86066 -37.13736 -36.83445 -35.18877 -33.34945 -32.54156 -32.33780 -29.74175 -28.53630 -28.15854 -25.41078 -25.23292 -24.26647 -22.31750 -21.94509 -21.53910 -20.50103 -19.38452 -18.55079 -18.05062 -17.83065 -17.20631 -16.92827 -16.71425 -16.52453 -16.43942 -16.27336 -16.06731 -15.81258 -15.48101 -15.04976 -14.89318 -14.38747 -14.19402 -14.13773 -13.76963 -13.71074 -13.50418 -13.09021 -12.75887 -12.73442 -12.56127 -12.54376 -12.38799 -12.28941 -11.83525 -11.67608 -11.60350 -11.42087 -11.25052 -10.91849 -10.84006 -10.56007 -10.54171 -10.16536 -10.09789 -9.18820 -8.19958 -6.31720 -0.27804 0.16688 0.64992 1.41474 1.43075 1.53991 1.58232 1.63984 2.02434 2.37669 2.45913 2.80744 3.13723 3.39596 3.65737 3.74330 3.85066 3.91415 4.06741 4.09889 4.12017 4.19938 4.23842 4.28926 4.38299 4.49530 4.54572 4.58511 4.67281 4.69487 4.73623 4.85157 4.93756 4.95825 5.04188 5.16712 5.32846 5.43835 5.52241 5.52655 5.69764 5.83505 6.02516 6.21367 6.59183 6.76429 6.86014 7.27793 7.38029 8.92174 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.001647 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.511168 B =16991.412035 C =17355.635177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.131 3.869 12 N -0.713 5.713 13 C 0.511 3.489 14 O -0.588 6.588 15 C -0.058 4.058 16 C 0.090 3.910 17 C -0.265 4.265 18 S 0.131 5.869 19 C 0.213 3.787 20 N -0.455 5.455 21 C 0.029 3.971 22 C 0.065 3.935 23 O -0.394 6.394 24 C 0.068 3.932 25 C 0.003 3.997 26 N -0.517 5.517 27 H 0.263 0.737 28 H -0.008 1.008 29 H -0.011 1.011 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.419 0.581 35 H 0.128 0.872 36 H 0.152 0.848 37 H 0.194 0.806 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.134 0.866 44 H 0.103 0.897 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 -34.061 1.529 35.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.007 3.993 12 N -0.365 5.365 13 C 0.298 3.702 14 O -0.468 6.468 15 C -0.100 4.100 16 C -0.042 4.042 17 C -0.405 4.405 18 S 0.383 5.617 19 C -0.156 4.156 20 N -0.176 5.176 21 C -0.098 4.098 22 C -0.012 4.012 23 O -0.313 6.313 24 C -0.009 4.009 25 C -0.124 4.124 26 N -0.237 5.237 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.256 0.744 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.211 0.789 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.083 0.917 43 H 0.152 0.848 44 H 0.122 0.878 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.297 -34.712 1.913 35.331 hybrid contribution 0.802 2.221 -0.485 2.411 sum 7.099 -32.491 1.428 33.288 Atomic orbital electron populations 1.70125 1.07993 1.27779 1.51708 1.26058 0.95769 1.03667 0.94790 0.85387 0.78654 0.78150 0.78479 1.19742 1.21121 1.18368 1.21688 0.93807 0.91944 1.50417 0.91373 1.18960 0.94514 0.93169 0.94946 1.21591 0.98374 0.91599 1.02292 1.21187 0.92046 0.85779 1.00304 1.45914 1.11267 1.04759 1.74568 1.21067 0.89541 0.84562 0.75062 1.90709 1.19376 1.85409 1.51291 1.20269 0.96032 0.85133 1.08551 1.19505 1.00810 0.97343 0.86517 1.26794 1.07917 1.01100 1.04714 1.83675 1.55763 1.21612 1.00697 1.25416 0.99938 0.95809 0.94455 1.58601 1.24208 1.17269 1.17549 1.22997 0.89923 1.00880 0.96013 1.22843 0.97613 0.87019 0.93696 1.88006 1.41430 1.31910 1.69912 1.22809 0.87823 0.99999 0.90260 1.23273 0.99868 0.89554 0.99699 1.66130 1.19530 1.05913 1.32138 0.92846 0.99003 0.99232 0.91353 0.90961 0.93329 0.93963 0.74387 0.85365 0.83076 0.78891 0.92217 0.88686 0.91861 0.85356 0.91664 0.84802 0.87848 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.15 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 11 C 0.13 4.70 5.67 86.38 0.49 5.19 16 12 N -0.71 -19.13 5.56 -463.05 -2.57 -21.70 16 13 C 0.51 14.72 7.82 87.66 0.69 15.41 16 14 O -0.59 -23.34 16.03 -3.04 -0.05 -23.39 16 15 C -0.06 -1.11 6.11 29.10 0.18 -0.93 16 16 C 0.09 2.16 5.23 41.40 0.22 2.38 16 17 C -0.27 -5.55 11.11 66.71 0.74 -4.81 16 18 S 0.13 2.43 21.18 -56.49 -1.20 1.23 16 19 C 0.21 4.87 6.81 179.32 1.22 6.09 16 20 N -0.45 -8.63 4.79 -707.81 -3.39 -12.02 16 21 C 0.03 0.45 5.55 86.32 0.48 0.93 16 22 C 0.07 0.77 7.01 72.01 0.50 1.28 16 23 O -0.39 -5.42 10.83 -148.98 -1.61 -7.03 16 24 C 0.07 0.70 7.01 72.01 0.50 1.21 16 25 C 0.00 0.04 4.67 86.31 0.40 0.45 16 26 N -0.52 -13.81 10.27 -189.87 -1.95 -15.76 16 27 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.42 7.90 8.47 -92.71 -0.79 7.11 16 35 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.09 1.65 7.92 -2.39 -0.02 1.63 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.10 1.22 7.65 -2.39 -0.02 1.21 16 45 H 0.07 0.82 7.88 -2.39 -0.02 0.80 16 Total: -1.00 -80.29 386.49 -1.83 -82.12 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.21 Total: 13.07 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 6.43 Total: -5.11 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -7.63 Total: -106.83 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.66 Total: -30.42 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.20 Total: 1.23 kcal Total: -80.29 -1.83 -82.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633134505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.962 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds