Wall clock time and date at job start Tue Mar 31 2020 22:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 119.99606 * 2 1 4 4 H 1.48504 * 109.47001 * 240.00129 * 3 2 1 5 5 H 1.48504 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47135 * 119.99863 * 3 2 1 7 7 C 1.38630 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99699 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.35782 * 116.99907 * 174.96527 * 9 7 2 11 11 C 1.38898 * 119.99644 * 5.33653 * 10 9 7 12 12 C 1.38009 * 120.00048 * 180.02562 * 11 10 9 13 13 C 1.38928 * 119.99687 * 0.02562 * 12 11 10 14 14 N 1.39985 * 119.99982 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00063 * 35.12073 * 14 13 12 16 16 O 1.21291 * 120.00288 * 355.49806 * 15 14 13 17 17 C 1.50700 * 120.00057 * 175.50108 * 15 14 13 18 18 H 1.09005 * 109.63396 * 299.59147 * 17 15 14 19 19 C 1.53306 * 109.80695 * 179.08262 * 17 15 14 20 20 C 1.52822 * 108.50656 * 170.36961 * 19 17 15 21 21 C 1.50443 * 110.44357 * 51.00818 * 20 19 17 22 22 N 1.32898 * 118.52973 * 162.54076 * 21 20 19 23 23 C 1.31600 * 121.06428 * 179.79563 * 22 21 20 24 24 N 1.31818 * 121.67231 * 359.97438 * 23 22 21 25 25 C 1.32188 * 120.63639 * 0.08261 * 24 23 22 26 26 C 1.37498 * 122.51171 * 342.29601 * 21 20 19 27 27 C 1.50333 * 123.00362 * 0.69733 * 26 21 20 28 28 C 1.38921 * 119.99429 * 0.24645 * 13 12 11 29 29 C 1.38002 * 119.99833 * 359.49555 * 28 13 12 30 30 H 0.97001 * 120.00631 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00531 * 0.02562 * 11 10 9 32 32 H 1.07996 * 119.99924 * 179.97438 * 12 11 10 33 33 H 0.96996 * 120.00129 * 215.12368 * 14 13 12 34 34 H 1.09007 * 109.63238 * 290.07005 * 19 17 15 35 35 H 1.08996 * 109.63784 * 50.46979 * 19 17 15 36 36 H 1.08998 * 109.30729 * 171.30573 * 20 19 17 37 37 H 1.08993 * 109.30720 * 290.70675 * 20 19 17 38 38 H 1.08001 * 119.16496 * 179.97438 * 23 22 21 39 39 H 1.08006 * 120.35897 * 180.02562 * 25 24 23 40 40 H 1.09007 * 109.31181 * 222.13727 * 27 26 21 41 41 H 1.08995 * 109.31044 * 102.53347 * 27 26 21 42 42 H 1.08000 * 119.99569 * 179.74247 * 28 13 12 43 43 H 1.08000 * 119.99795 * 180.25067 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6965 -1.2126 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3350 -2.3680 0.0005 10 6 2.0705 -3.5045 -0.1051 11 6 3.4578 -3.4371 -0.0951 12 6 4.2056 -4.5921 -0.2030 13 6 3.5706 -5.8220 -0.3221 14 7 4.3289 -6.9935 -0.4321 15 6 5.4948 -7.1067 0.2346 16 8 5.9274 -6.1645 0.8641 17 6 6.2610 -8.4038 0.1979 18 1 5.6486 -9.2029 0.6158 19 6 7.5537 -8.2668 1.0106 20 6 8.1839 -9.6513 1.1567 21 6 8.2991 -10.3206 -0.1858 22 7 9.1242 -11.3549 -0.3107 23 6 9.2606 -11.9797 -1.4608 24 7 8.5888 -11.6102 -2.5331 25 6 7.7507 -10.5892 -2.4843 26 6 7.5808 -9.9057 -1.2824 27 6 6.6303 -8.7416 -1.2462 28 6 2.1830 -5.8886 -0.3378 29 6 1.4355 -4.7341 -0.2245 30 1 -0.4851 0.8400 -0.0004 31 1 3.9515 -2.4810 -0.0030 32 1 5.2842 -4.5397 -0.1957 33 1 4.0154 -7.7238 -0.9882 34 1 8.2446 -7.6031 0.4906 35 1 7.3257 -7.8593 1.9955 36 1 9.1765 -9.5510 1.5957 37 1 7.5633 -10.2624 1.8120 38 1 9.9401 -12.8164 -1.5279 39 1 7.2022 -10.2906 -3.3656 40 1 5.7262 -8.9971 -1.7990 41 1 7.1032 -7.8756 -1.7091 42 1 1.6894 -6.8443 -0.4345 43 1 0.3568 -4.7863 -0.2326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645885279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:25 Heat of formation + Delta-G solvation = 5.937547 kcal Electronic energy + Delta-G solvation = -27532.639704 eV Core-core repulsion = 23543.296309 eV Total energy + Delta-G solvation = -3989.343395 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80698 -40.35371 -38.84166 -37.29571 -36.33040 -34.54001 -33.99417 -32.22571 -31.84385 -30.82803 -30.23473 -27.96665 -25.78092 -25.28381 -24.56469 -23.46059 -22.53388 -21.87787 -20.76215 -19.78887 -18.38626 -17.99332 -17.54767 -17.38403 -16.83434 -16.46432 -15.69882 -15.38522 -14.92567 -14.56340 -14.47262 -14.29574 -14.27851 -14.05451 -13.84885 -13.63004 -13.59756 -13.31322 -12.91722 -12.69737 -12.59310 -12.15756 -11.77030 -11.67466 -11.56779 -11.47901 -11.34232 -11.20121 -11.02418 -10.79749 -10.77637 -10.46907 -9.74920 -9.72208 -9.64882 -9.58313 -9.20432 -8.72282 -8.24464 -6.98187 -6.46421 -4.04206 0.47204 0.62934 2.01708 2.17289 2.74110 3.13069 3.13887 3.16941 3.17530 3.32248 3.58423 3.78748 3.96165 3.99265 4.08650 4.18196 4.37637 4.51399 4.60784 4.80445 4.84854 4.97164 5.00468 5.08111 5.09631 5.14833 5.22919 5.34066 5.43391 5.59434 5.63424 5.71453 5.72839 5.86562 6.01850 6.09857 6.13897 6.29774 6.56696 6.68694 6.81509 6.96470 7.05393 7.27069 7.40980 7.61779 7.67394 7.74279 7.98371 8.28121 8.99133 9.67974 10.71244 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.001940 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.563317 B =14427.477273 C =14736.342300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.147 3.853 11 C -0.221 4.221 12 C -0.063 4.063 13 C 0.030 3.970 14 N -0.658 5.658 15 C 0.511 3.489 16 O -0.521 6.521 17 C -0.107 4.107 18 H 0.103 0.897 19 C -0.100 4.100 20 C -0.074 4.074 21 C 0.182 3.818 22 N -0.521 5.521 23 C 0.289 3.711 24 N -0.523 5.523 25 C 0.153 3.847 26 C -0.178 4.178 27 C -0.065 4.065 28 C -0.092 4.092 29 C -0.179 4.179 30 H 0.271 0.729 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.195 0.805 39 H 0.170 0.830 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.261 -21.558 -2.817 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.093 3.907 11 C -0.241 4.241 12 C -0.083 4.083 13 C -0.062 4.062 14 N -0.303 5.303 15 C 0.297 3.703 16 O -0.396 6.396 17 C -0.128 4.128 18 H 0.121 0.879 19 C -0.138 4.138 20 C -0.112 4.112 21 C 0.038 3.962 22 N -0.235 5.235 23 C 0.001 3.999 24 N -0.236 5.236 25 C -0.015 4.015 26 C -0.182 4.182 27 C -0.104 4.104 28 C -0.112 4.112 29 C -0.198 4.198 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.235 0.765 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.212 0.788 39 H 0.187 0.813 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.788 -21.458 -2.372 26.168 hybrid contribution -0.239 0.962 -0.332 1.046 sum 14.549 -20.496 -2.704 25.280 Atomic orbital electron populations 1.70034 1.05940 1.27817 1.45909 1.25288 0.95857 0.98848 0.96514 0.85780 0.78703 0.79714 0.79254 1.19480 1.20278 1.19449 1.21285 0.91828 0.80803 1.52813 0.89055 1.83972 1.34284 1.11426 1.78206 1.19417 0.90287 0.88142 0.92890 1.21110 0.93573 0.98805 1.10640 1.20839 0.99743 0.90313 0.97399 1.17249 0.89901 0.85302 1.13757 1.43222 1.21768 1.17589 1.47697 1.20435 0.81337 0.89521 0.79001 1.90726 1.67406 1.39599 1.41892 1.21370 0.97942 0.96387 0.97113 0.87887 1.21438 0.94821 0.95550 1.02039 1.20491 1.03478 0.95609 0.91597 1.21325 0.88797 0.90292 0.95781 1.68418 1.18785 1.08408 1.27919 1.24922 0.94656 0.97081 0.83225 1.68433 1.07966 1.15017 1.32231 1.23416 0.92218 0.89027 0.96840 1.21092 1.01183 1.00379 0.95592 1.20337 0.98139 0.95752 0.96169 1.20354 0.91464 0.97434 1.01971 1.19996 0.99503 0.89872 1.10476 0.91953 0.85216 0.85746 0.76488 0.90542 0.89013 0.88592 0.88866 0.78799 0.81287 0.89344 0.89025 0.86771 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.87 9.48 30.88 0.29 -10.58 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -4.95 9.75 0.01 0.00 -4.95 16 10 C 0.15 3.50 6.65 -39.09 -0.26 3.24 16 11 C -0.22 -4.88 9.16 -39.42 -0.36 -5.24 16 12 C -0.06 -1.22 8.69 -39.41 -0.34 -1.56 16 13 C 0.03 0.50 6.30 -83.63 -0.53 -0.03 16 14 N -0.66 -7.84 5.26 -9.82 -0.05 -7.90 16 15 C 0.51 6.17 6.99 -10.98 -0.08 6.09 16 16 O -0.52 -8.57 13.29 5.55 0.07 -8.50 16 17 C -0.11 -0.83 2.55 -91.70 -0.23 -1.06 16 18 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 19 C -0.10 -0.80 4.73 -26.66 -0.13 -0.93 16 20 C -0.07 -0.52 5.95 -28.10 -0.17 -0.68 16 21 C 0.18 1.53 6.62 -82.52 -0.55 0.98 16 22 N -0.52 -4.85 10.32 -11.06 -0.11 -4.96 16 23 C 0.29 2.39 12.29 -92.30 -1.13 1.26 16 24 N -0.52 -4.63 10.44 -14.47 -0.15 -4.78 16 25 C 0.15 1.11 10.94 -17.00 -0.19 0.93 16 26 C -0.18 -1.31 5.73 -104.67 -0.60 -1.91 16 27 C -0.07 -0.41 4.86 -28.15 -0.14 -0.54 16 28 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 29 C -0.18 -3.61 9.98 -39.42 -0.39 -4.01 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.13 2.89 5.63 -52.49 -0.30 2.59 16 32 H 0.12 2.36 6.23 -52.49 -0.33 2.03 16 33 H 0.40 3.23 8.32 -40.82 -0.34 2.89 16 34 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.09 0.81 7.80 -51.93 -0.41 0.41 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.09 0.36 7.74 -51.93 -0.40 -0.04 16 41 H 0.09 0.62 8.11 -51.93 -0.42 0.19 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -34.45 362.03 -9.31 -43.76 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.98 Total: 5.69 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -5.29 Total: -14.97 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.44 Total: -41.94 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.07 Total: -13.45 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.45 -9.31 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645885279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.698 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds