Wall clock time and date at job start Tue Mar 31 2020 22:17:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31578 * 1
3 3 Si 1.86799 * 119.99606 * 2 1
4 4 H 1.48504 * 109.47001 * 240.00129 * 3 2 1
5 5 H 1.48504 * 109.47427 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47135 * 119.99863 * 3 2 1
7 7 C 1.38630 * 120.00205 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99699 * 180.02562 * 7 2 1
9 9 O 1.34809 * 119.99936 * 0.02562 * 7 2 1
10 10 C 1.35782 * 116.99907 * 174.96527 * 9 7 2
11 11 C 1.38898 * 119.99644 * 5.33653 * 10 9 7
12 12 C 1.38009 * 120.00048 * 180.02562 * 11 10 9
13 13 C 1.38928 * 119.99687 * 0.02562 * 12 11 10
14 14 N 1.39985 * 119.99982 * 179.97438 * 13 12 11
15 15 C 1.34780 * 120.00063 * 35.12073 * 14 13 12
16 16 O 1.21291 * 120.00288 * 355.49806 * 15 14 13
17 17 C 1.50700 * 120.00057 * 175.50108 * 15 14 13
18 18 H 1.09005 * 109.63396 * 299.59147 * 17 15 14
19 19 C 1.53306 * 109.80695 * 179.08262 * 17 15 14
20 20 C 1.52822 * 108.50656 * 170.36961 * 19 17 15
21 21 C 1.50443 * 110.44357 * 51.00818 * 20 19 17
22 22 N 1.32898 * 118.52973 * 162.54076 * 21 20 19
23 23 C 1.31600 * 121.06428 * 179.79563 * 22 21 20
24 24 N 1.31818 * 121.67231 * 359.97438 * 23 22 21
25 25 C 1.32188 * 120.63639 * 0.08261 * 24 23 22
26 26 C 1.37498 * 122.51171 * 342.29601 * 21 20 19
27 27 C 1.50333 * 123.00362 * 0.69733 * 26 21 20
28 28 C 1.38921 * 119.99429 * 0.24645 * 13 12 11
29 29 C 1.38002 * 119.99833 * 359.49555 * 28 13 12
30 30 H 0.97001 * 120.00631 * 0.02562 * 1 2 3
31 31 H 1.08001 * 120.00531 * 0.02562 * 11 10 9
32 32 H 1.07996 * 119.99924 * 179.97438 * 12 11 10
33 33 H 0.96996 * 120.00129 * 215.12368 * 14 13 12
34 34 H 1.09007 * 109.63238 * 290.07005 * 19 17 15
35 35 H 1.08996 * 109.63784 * 50.46979 * 19 17 15
36 36 H 1.08998 * 109.30729 * 171.30573 * 20 19 17
37 37 H 1.08993 * 109.30720 * 290.70675 * 20 19 17
38 38 H 1.08001 * 119.16496 * 179.97438 * 23 22 21
39 39 H 1.08006 * 120.35897 * 180.02562 * 25 24 23
40 40 H 1.09007 * 109.31181 * 222.13727 * 27 26 21
41 41 H 1.08995 * 109.31044 * 102.53347 * 27 26 21
42 42 H 1.08000 * 119.99569 * 179.74247 * 28 13 12
43 43 H 1.08000 * 119.99795 * 180.25067 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3158 0.0000 0.0000
3 14 2.2497 1.6178 0.0000
4 1 3.1034 1.6965 -1.2126
5 1 1.2846 2.7465 -0.0006
6 1 3.1034 1.6965 1.2125
7 6 2.0090 -1.2006 0.0005
8 1 3.0889 -1.2005 0.0010
9 8 1.3350 -2.3680 0.0005
10 6 2.0705 -3.5045 -0.1051
11 6 3.4578 -3.4371 -0.0951
12 6 4.2056 -4.5921 -0.2030
13 6 3.5706 -5.8220 -0.3221
14 7 4.3289 -6.9935 -0.4321
15 6 5.4948 -7.1067 0.2346
16 8 5.9274 -6.1645 0.8641
17 6 6.2610 -8.4038 0.1979
18 1 5.6486 -9.2029 0.6158
19 6 7.5537 -8.2668 1.0106
20 6 8.1839 -9.6513 1.1567
21 6 8.2991 -10.3206 -0.1858
22 7 9.1242 -11.3549 -0.3107
23 6 9.2606 -11.9797 -1.4608
24 7 8.5888 -11.6102 -2.5331
25 6 7.7507 -10.5892 -2.4843
26 6 7.5808 -9.9057 -1.2824
27 6 6.6303 -8.7416 -1.2462
28 6 2.1830 -5.8886 -0.3378
29 6 1.4355 -4.7341 -0.2245
30 1 -0.4851 0.8400 -0.0004
31 1 3.9515 -2.4810 -0.0030
32 1 5.2842 -4.5397 -0.1957
33 1 4.0154 -7.7238 -0.9882
34 1 8.2446 -7.6031 0.4906
35 1 7.3257 -7.8593 1.9955
36 1 9.1765 -9.5510 1.5957
37 1 7.5633 -10.2624 1.8120
38 1 9.9401 -12.8164 -1.5279
39 1 7.2022 -10.2906 -3.3656
40 1 5.7262 -8.9971 -1.7990
41 1 7.1032 -7.8756 -1.7091
42 1 1.6894 -6.8443 -0.4345
43 1 0.3568 -4.7863 -0.2326
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001645885279.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:25
Heat of formation + Delta-G solvation = 5.937547 kcal
Electronic energy + Delta-G solvation = -27532.639704 eV
Core-core repulsion = 23543.296309 eV
Total energy + Delta-G solvation = -3989.343395 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.80698 -40.35371 -38.84166 -37.29571 -36.33040 -34.54001 -33.99417 -32.22571
-31.84385 -30.82803 -30.23473 -27.96665 -25.78092 -25.28381 -24.56469 -23.46059
-22.53388 -21.87787 -20.76215 -19.78887 -18.38626 -17.99332 -17.54767 -17.38403
-16.83434 -16.46432 -15.69882 -15.38522 -14.92567 -14.56340 -14.47262 -14.29574
-14.27851 -14.05451 -13.84885 -13.63004 -13.59756 -13.31322 -12.91722 -12.69737
-12.59310 -12.15756 -11.77030 -11.67466 -11.56779 -11.47901 -11.34232 -11.20121
-11.02418 -10.79749 -10.77637 -10.46907 -9.74920 -9.72208 -9.64882 -9.58313
-9.20432 -8.72282 -8.24464 -6.98187 -6.46421 -4.04206 0.47204 0.62934
2.01708 2.17289 2.74110 3.13069 3.13887 3.16941 3.17530 3.32248
3.58423 3.78748 3.96165 3.99265 4.08650 4.18196 4.37637 4.51399
4.60784 4.80445 4.84854 4.97164 5.00468 5.08111 5.09631 5.14833
5.22919 5.34066 5.43391 5.59434 5.63424 5.71453 5.72839 5.86562
6.01850 6.09857 6.13897 6.29774 6.56696 6.68694 6.81509 6.96470
7.05393 7.27069 7.40980 7.61779 7.67394 7.74279 7.98371 8.28121
8.99133 9.67974 10.71244
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.026850 B = 0.001940 C = 0.001900
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.563317 B =14427.477273 C =14736.342300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.862 5.862
2 C 0.039 3.961
3 Si 0.941 3.059
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.269 1.269
7 C -0.391 4.391
8 H 0.092 0.908
9 O -0.176 6.176
10 C 0.147 3.853
11 C -0.221 4.221
12 C -0.063 4.063
13 C 0.030 3.970
14 N -0.658 5.658
15 C 0.511 3.489
16 O -0.521 6.521
17 C -0.107 4.107
18 H 0.103 0.897
19 C -0.100 4.100
20 C -0.074 4.074
21 C 0.182 3.818
22 N -0.521 5.521
23 C 0.289 3.711
24 N -0.523 5.523
25 C 0.153 3.847
26 C -0.178 4.178
27 C -0.065 4.065
28 C -0.092 4.092
29 C -0.179 4.179
30 H 0.271 0.729
31 H 0.130 0.870
32 H 0.125 0.875
33 H 0.401 0.599
34 H 0.076 0.924
35 H 0.091 0.909
36 H 0.096 0.904
37 H 0.093 0.907
38 H 0.195 0.805
39 H 0.170 0.830
40 H 0.088 0.912
41 H 0.091 0.909
42 H 0.114 0.886
43 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.261 -21.558 -2.817 26.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.497 5.497
2 C -0.165 4.165
3 Si 0.765 3.235
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.194 1.194
7 C -0.467 4.467
8 H 0.109 0.891
9 O -0.079 6.079
10 C 0.093 3.907
11 C -0.241 4.241
12 C -0.083 4.083
13 C -0.062 4.062
14 N -0.303 5.303
15 C 0.297 3.703
16 O -0.396 6.396
17 C -0.128 4.128
18 H 0.121 0.879
19 C -0.138 4.138
20 C -0.112 4.112
21 C 0.038 3.962
22 N -0.235 5.235
23 C 0.001 3.999
24 N -0.236 5.236
25 C -0.015 4.015
26 C -0.182 4.182
27 C -0.104 4.104
28 C -0.112 4.112
29 C -0.198 4.198
30 H 0.080 0.920
31 H 0.148 0.852
32 H 0.143 0.857
33 H 0.235 0.765
34 H 0.095 0.905
35 H 0.110 0.890
36 H 0.114 0.886
37 H 0.111 0.889
38 H 0.212 0.788
39 H 0.187 0.813
40 H 0.107 0.893
41 H 0.110 0.890
42 H 0.132 0.868
43 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 14.788 -21.458 -2.372 26.168
hybrid contribution -0.239 0.962 -0.332 1.046
sum 14.549 -20.496 -2.704 25.280
Atomic orbital electron populations
1.70034 1.05940 1.27817 1.45909 1.25288 0.95857 0.98848 0.96514
0.85780 0.78703 0.79714 0.79254 1.19480 1.20278 1.19449 1.21285
0.91828 0.80803 1.52813 0.89055 1.83972 1.34284 1.11426 1.78206
1.19417 0.90287 0.88142 0.92890 1.21110 0.93573 0.98805 1.10640
1.20839 0.99743 0.90313 0.97399 1.17249 0.89901 0.85302 1.13757
1.43222 1.21768 1.17589 1.47697 1.20435 0.81337 0.89521 0.79001
1.90726 1.67406 1.39599 1.41892 1.21370 0.97942 0.96387 0.97113
0.87887 1.21438 0.94821 0.95550 1.02039 1.20491 1.03478 0.95609
0.91597 1.21325 0.88797 0.90292 0.95781 1.68418 1.18785 1.08408
1.27919 1.24922 0.94656 0.97081 0.83225 1.68433 1.07966 1.15017
1.32231 1.23416 0.92218 0.89027 0.96840 1.21092 1.01183 1.00379
0.95592 1.20337 0.98139 0.95752 0.96169 1.20354 0.91464 0.97434
1.01971 1.19996 0.99503 0.89872 1.10476 0.91953 0.85216 0.85746
0.76488 0.90542 0.89013 0.88592 0.88866 0.78799 0.81287 0.89344
0.89025 0.86771 0.86065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16
2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16
3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16
4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16
5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16
6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
7 C -0.39 -10.87 9.48 30.88 0.29 -10.58 16
8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16
9 O -0.18 -4.95 9.75 0.01 0.00 -4.95 16
10 C 0.15 3.50 6.65 -39.09 -0.26 3.24 16
11 C -0.22 -4.88 9.16 -39.42 -0.36 -5.24 16
12 C -0.06 -1.22 8.69 -39.41 -0.34 -1.56 16
13 C 0.03 0.50 6.30 -83.63 -0.53 -0.03 16
14 N -0.66 -7.84 5.26 -9.82 -0.05 -7.90 16
15 C 0.51 6.17 6.99 -10.98 -0.08 6.09 16
16 O -0.52 -8.57 13.29 5.55 0.07 -8.50 16
17 C -0.11 -0.83 2.55 -91.70 -0.23 -1.06 16
18 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16
19 C -0.10 -0.80 4.73 -26.66 -0.13 -0.93 16
20 C -0.07 -0.52 5.95 -28.10 -0.17 -0.68 16
21 C 0.18 1.53 6.62 -82.52 -0.55 0.98 16
22 N -0.52 -4.85 10.32 -11.06 -0.11 -4.96 16
23 C 0.29 2.39 12.29 -92.30 -1.13 1.26 16
24 N -0.52 -4.63 10.44 -14.47 -0.15 -4.78 16
25 C 0.15 1.11 10.94 -17.00 -0.19 0.93 16
26 C -0.18 -1.31 5.73 -104.67 -0.60 -1.91 16
27 C -0.07 -0.41 4.86 -28.15 -0.14 -0.54 16
28 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16
29 C -0.18 -3.61 9.98 -39.42 -0.39 -4.01 16
30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16
31 H 0.13 2.89 5.63 -52.49 -0.30 2.59 16
32 H 0.12 2.36 6.23 -52.49 -0.33 2.03 16
33 H 0.40 3.23 8.32 -40.82 -0.34 2.89 16
34 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16
35 H 0.09 0.81 7.80 -51.93 -0.41 0.41 16
36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16
39 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16
40 H 0.09 0.36 7.74 -51.93 -0.40 -0.04 16
41 H 0.09 0.62 8.11 -51.93 -0.42 0.19 16
42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16
43 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16
LS Contribution 362.03 15.07 5.46 5.46
Total: -1.00 -34.45 362.03 -9.31 -43.76
By element:
Atomic # 1 Polarization: 10.67 SS G_CDS: -4.98 Total: 5.69 kcal
Atomic # 6 Polarization: -9.69 SS G_CDS: -5.29 Total: -14.97 kcal
Atomic # 7 Polarization: -42.38 SS G_CDS: 0.44 Total: -41.94 kcal
Atomic # 8 Polarization: -13.53 SS G_CDS: 0.07 Total: -13.45 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -34.45 -9.31 -43.76 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001645885279.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.698 kcal
(2) G-P(sol) polarization free energy of solvation -34.447 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.251 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds