Wall clock time and date at job start Tue Mar 31 2020 22:17:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31578 * 1
3 3 Si 1.86799 * 119.99606 * 2 1
4 4 H 1.48504 * 109.47001 * 240.00129 * 3 2 1
5 5 H 1.48504 * 109.47427 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47135 * 119.99863 * 3 2 1
7 7 C 1.38630 * 120.00205 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99699 * 180.02562 * 7 2 1
9 9 O 1.34809 * 119.99936 * 0.02562 * 7 2 1
10 10 C 1.35782 * 116.99907 * 174.96527 * 9 7 2
11 11 C 1.38898 * 119.99644 * 5.33653 * 10 9 7
12 12 C 1.38009 * 120.00048 * 180.02562 * 11 10 9
13 13 C 1.38928 * 119.99687 * 0.02562 * 12 11 10
14 14 N 1.39985 * 119.99982 * 179.97438 * 13 12 11
15 15 C 1.34780 * 120.00063 * 35.12073 * 14 13 12
16 16 O 1.21291 * 120.00288 * 355.49806 * 15 14 13
17 17 C 1.50700 * 120.00057 * 175.50108 * 15 14 13
18 18 H 1.09005 * 109.63396 * 299.59147 * 17 15 14
19 19 C 1.53306 * 109.80695 * 179.08262 * 17 15 14
20 20 C 1.52822 * 108.50656 * 170.36961 * 19 17 15
21 21 C 1.50443 * 110.44357 * 51.00818 * 20 19 17
22 22 N 1.32898 * 118.52973 * 162.54076 * 21 20 19
23 23 C 1.31600 * 121.06428 * 179.79563 * 22 21 20
24 24 N 1.31818 * 121.67231 * 359.97438 * 23 22 21
25 25 C 1.32188 * 120.63639 * 0.08261 * 24 23 22
26 26 C 1.37498 * 122.51171 * 342.29601 * 21 20 19
27 27 C 1.50333 * 123.00362 * 0.69733 * 26 21 20
28 28 C 1.38921 * 119.99429 * 0.24645 * 13 12 11
29 29 C 1.38002 * 119.99833 * 359.49555 * 28 13 12
30 30 H 0.97001 * 120.00631 * 0.02562 * 1 2 3
31 31 H 1.08001 * 120.00531 * 0.02562 * 11 10 9
32 32 H 1.07996 * 119.99924 * 179.97438 * 12 11 10
33 33 H 0.96996 * 120.00129 * 215.12368 * 14 13 12
34 34 H 1.09007 * 109.63238 * 290.07005 * 19 17 15
35 35 H 1.08996 * 109.63784 * 50.46979 * 19 17 15
36 36 H 1.08998 * 109.30729 * 171.30573 * 20 19 17
37 37 H 1.08993 * 109.30720 * 290.70675 * 20 19 17
38 38 H 1.08001 * 119.16496 * 179.97438 * 23 22 21
39 39 H 1.08006 * 120.35897 * 180.02562 * 25 24 23
40 40 H 1.09007 * 109.31181 * 222.13727 * 27 26 21
41 41 H 1.08995 * 109.31044 * 102.53347 * 27 26 21
42 42 H 1.08000 * 119.99569 * 179.74247 * 28 13 12
43 43 H 1.08000 * 119.99795 * 180.25067 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3158 0.0000 0.0000
3 14 2.2497 1.6178 0.0000
4 1 3.1034 1.6965 -1.2126
5 1 1.2846 2.7465 -0.0006
6 1 3.1034 1.6965 1.2125
7 6 2.0090 -1.2006 0.0005
8 1 3.0889 -1.2005 0.0010
9 8 1.3350 -2.3680 0.0005
10 6 2.0705 -3.5045 -0.1051
11 6 3.4578 -3.4371 -0.0951
12 6 4.2056 -4.5921 -0.2030
13 6 3.5706 -5.8220 -0.3221
14 7 4.3289 -6.9935 -0.4321
15 6 5.4948 -7.1067 0.2346
16 8 5.9274 -6.1645 0.8641
17 6 6.2610 -8.4038 0.1979
18 1 5.6486 -9.2029 0.6158
19 6 7.5537 -8.2668 1.0106
20 6 8.1839 -9.6513 1.1567
21 6 8.2991 -10.3206 -0.1858
22 7 9.1242 -11.3549 -0.3107
23 6 9.2606 -11.9797 -1.4608
24 7 8.5888 -11.6102 -2.5331
25 6 7.7507 -10.5892 -2.4843
26 6 7.5808 -9.9057 -1.2824
27 6 6.6303 -8.7416 -1.2462
28 6 2.1830 -5.8886 -0.3378
29 6 1.4355 -4.7341 -0.2245
30 1 -0.4851 0.8400 -0.0004
31 1 3.9515 -2.4810 -0.0030
32 1 5.2842 -4.5397 -0.1957
33 1 4.0154 -7.7238 -0.9882
34 1 8.2446 -7.6031 0.4906
35 1 7.3257 -7.8593 1.9955
36 1 9.1765 -9.5510 1.5957
37 1 7.5633 -10.2624 1.8120
38 1 9.9401 -12.8164 -1.5279
39 1 7.2022 -10.2906 -3.3656
40 1 5.7262 -8.9971 -1.7990
41 1 7.1032 -7.8756 -1.7091
42 1 1.6894 -6.8443 -0.4345
43 1 0.3568 -4.7863 -0.2326
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001645885279.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:24
Heat of formation + Delta-G solvation = -16.178739 kcal
Electronic energy + Delta-G solvation = -27533.598738 eV
Core-core repulsion = 23543.296309 eV
Total energy + Delta-G solvation = -3990.302429 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.41187 -41.49055 -40.41775 -38.46341 -37.49318 -35.46420 -34.99327 -34.15339
-32.46574 -31.84056 -31.52388 -29.39669 -27.32599 -26.29796 -25.31900 -24.00567
-23.96184 -23.22314 -21.87515 -20.71494 -19.91081 -19.22116 -18.73170 -18.06860
-18.02858 -17.64463 -16.68757 -16.26817 -16.22295 -15.85436 -15.69999 -15.47966
-15.23028 -14.98208 -14.91306 -14.84091 -14.62048 -14.43983 -14.14261 -13.98541
-13.56351 -13.35061 -13.19639 -13.06159 -12.85751 -12.68091 -12.44339 -12.16635
-12.14742 -11.94994 -11.83577 -11.40089 -11.37656 -11.07484 -10.71908 -10.48665
-10.19557 -10.16168 -9.81491 -8.59464 -8.46239 -6.12977 -0.07701 0.06896
0.53106 0.58030 1.35087 1.43974 1.50635 1.65749 2.12419 2.18651
2.75700 2.83237 3.03651 3.16272 3.28401 3.43898 3.45364 3.53705
3.62752 3.75632 3.97890 4.11831 4.14487 4.24168 4.28045 4.35242
4.46957 4.50337 4.57181 4.65962 4.69239 4.77822 4.83771 4.90266
5.06082 5.08860 5.11590 5.16070 5.24917 5.37175 5.47261 5.48794
5.61964 5.72238 6.01358 6.02967 6.19367 6.57732 6.98336 7.11166
7.27169 7.78240 8.76107
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.026850 B = 0.001940 C = 0.001900
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.563317 B =14427.477273 C =14736.342300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.021 4.021
3 Si 1.015 2.985
4 H -0.258 1.258
5 H -0.270 1.270
6 H -0.261 1.261
7 C -0.413 4.413
8 H 0.097 0.903
9 O -0.228 6.228
10 C 0.105 3.895
11 C -0.231 4.231
12 C -0.075 4.075
13 C 0.063 3.937
14 N -0.646 5.646
15 C 0.514 3.486
16 O -0.565 6.565
17 C -0.093 4.093
18 H 0.130 0.870
19 C -0.097 4.097
20 C -0.066 4.066
21 C 0.166 3.834
22 N -0.542 5.542
23 C 0.280 3.720
24 N -0.542 5.542
25 C 0.150 3.850
26 C -0.177 4.177
27 C -0.060 4.060
28 C -0.076 4.076
29 C -0.182 4.182
30 H 0.273 0.727
31 H 0.115 0.885
32 H 0.127 0.873
33 H 0.426 0.574
34 H 0.064 0.936
35 H 0.080 0.920
36 H 0.095 0.905
37 H 0.106 0.894
38 H 0.216 0.784
39 H 0.198 0.802
40 H 0.120 0.880
41 H 0.088 0.912
42 H 0.168 0.832
43 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.419 -24.540 -3.711 29.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.219 4.219
3 Si 0.835 3.165
4 H -0.183 1.183
5 H -0.194 1.194
6 H -0.185 1.185
7 C -0.489 4.489
8 H 0.114 0.886
9 O -0.135 6.135
10 C 0.054 3.946
11 C -0.251 4.251
12 C -0.095 4.095
13 C -0.031 4.031
14 N -0.293 5.293
15 C 0.302 3.698
16 O -0.443 6.443
17 C -0.114 4.114
18 H 0.148 0.852
19 C -0.136 4.136
20 C -0.104 4.104
21 C 0.023 3.977
22 N -0.257 5.257
23 C -0.007 4.007
24 N -0.256 5.256
25 C -0.017 4.017
26 C -0.181 4.181
27 C -0.099 4.099
28 C -0.096 4.096
29 C -0.202 4.202
30 H 0.082 0.918
31 H 0.132 0.868
32 H 0.145 0.855
33 H 0.266 0.734
34 H 0.082 0.918
35 H 0.099 0.901
36 H 0.113 0.887
37 H 0.124 0.876
38 H 0.232 0.768
39 H 0.214 0.786
40 H 0.138 0.862
41 H 0.106 0.894
42 H 0.185 0.815
43 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 15.981 -24.538 -3.287 29.467
hybrid contribution -0.408 1.477 -0.066 1.534
sum 15.574 -23.060 -3.353 28.028
Atomic orbital electron populations
1.70170 1.07812 1.28821 1.48764 1.26518 0.96870 1.02550 0.95942
0.84698 0.77452 0.74590 0.79807 1.18256 1.19391 1.18499 1.21708
0.92356 0.81602 1.53248 0.88562 1.83934 1.35634 1.12440 1.81497
1.19965 0.91162 0.88388 0.95056 1.21110 0.93290 0.99431 1.11270
1.20936 0.99807 0.90721 0.98055 1.17377 0.90502 0.86057 1.09133
1.43168 1.21346 1.16613 1.48155 1.21208 0.80747 0.90338 0.77474
1.90732 1.68332 1.41599 1.43598 1.21336 0.97308 0.94235 0.98552
0.85210 1.21370 0.94927 0.95914 1.01380 1.20424 1.03626 0.94885
0.91434 1.21579 0.89055 0.90449 0.96604 1.68434 1.19533 1.09166
1.28540 1.25376 0.94865 0.97527 0.82959 1.68493 1.08722 1.15903
1.32484 1.23909 0.91748 0.88303 0.97742 1.21141 1.01120 1.00489
0.95310 1.20360 0.99241 0.95190 0.95067 1.20797 0.91208 0.98219
0.99397 1.20340 1.00325 0.89759 1.09752 0.91819 0.86760 0.85475
0.73422 0.91759 0.90115 0.88676 0.87634 0.76823 0.78564 0.86174
0.89364 0.81469 0.85549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.15 13.67 21.61 0.30 -55.86 16
2 C -0.02 -1.20 5.49 84.82 0.47 -0.74 16
3 Si 1.02 43.39 29.55 68.60 2.03 45.42 16
4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16
5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16
6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16
7 C -0.41 -24.29 9.48 67.91 0.64 -23.65 16
8 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16
9 O -0.23 -13.69 9.75 -22.88 -0.22 -13.92 16
10 C 0.10 5.18 6.65 22.59 0.15 5.33 16
11 C -0.23 -10.52 9.16 22.37 0.20 -10.31 16
12 C -0.08 -2.84 8.69 22.38 0.19 -2.65 16
13 C 0.06 1.89 6.30 38.17 0.24 2.13 16
14 N -0.65 -12.37 5.26 -303.37 -1.60 -13.96 16
15 C 0.51 10.64 6.99 87.66 0.61 11.25 16
16 O -0.56 -17.60 13.29 -3.06 -0.04 -17.64 16
17 C -0.09 -1.08 2.55 -11.49 -0.03 -1.11 16
18 H 0.13 0.94 8.10 -2.38 -0.02 0.92 16
19 C -0.10 -1.35 4.73 30.64 0.14 -1.21 16
20 C -0.07 -0.78 5.95 29.71 0.18 -0.60 16
21 C 0.17 2.39 6.62 42.14 0.28 2.67 16
22 N -0.54 -9.11 10.32 -188.91 -1.95 -11.06 16
23 C 0.28 4.13 12.29 180.94 2.22 6.35 16
24 N -0.54 -8.31 10.44 -199.69 -2.09 -10.40 16
25 C 0.15 1.70 10.94 84.90 0.93 2.62 16
26 C -0.18 -1.99 5.73 -19.90 -0.11 -2.11 16
27 C -0.06 -0.48 4.86 29.68 0.14 -0.34 16
28 C -0.08 -2.25 9.96 22.38 0.22 -2.03 16
29 C -0.18 -7.24 9.98 22.37 0.22 -7.01 16
30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
31 H 0.11 5.42 5.63 -2.91 -0.02 5.40 16
32 H 0.13 4.76 6.23 -2.91 -0.02 4.74 16
33 H 0.43 4.15 8.32 -92.71 -0.77 3.38 16
34 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16
35 H 0.08 1.32 7.80 -2.39 -0.02 1.30 16
36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16
38 H 0.22 1.88 8.06 -2.91 -0.02 1.85 16
39 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16
40 H 0.12 0.24 7.74 -2.38 -0.02 0.23 16
41 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16
42 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16
43 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16
Total: -1.00 -81.62 362.03 3.44 -78.18
By element:
Atomic # 1 Polarization: 20.33 SS G_CDS: 0.30 Total: 20.63 kcal
Atomic # 6 Polarization: -28.12 SS G_CDS: 6.71 Total: -21.40 kcal
Atomic # 7 Polarization: -85.94 SS G_CDS: -5.34 Total: -91.27 kcal
Atomic # 8 Polarization: -31.29 SS G_CDS: -0.26 Total: -31.56 kcal
Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal
Total: -81.62 3.44 -78.18 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001645885279.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.003 kcal
(2) G-P(sol) polarization free energy of solvation -81.624 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.179 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds