Wall clock time and date at job start Tue Mar 31 2020 22:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 119.99606 * 2 1 4 4 H 1.48504 * 109.47001 * 240.00129 * 3 2 1 5 5 H 1.48504 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47135 * 119.99863 * 3 2 1 7 7 C 1.38630 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99699 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.35782 * 116.99907 * 174.96527 * 9 7 2 11 11 C 1.38898 * 119.99644 * 5.33653 * 10 9 7 12 12 C 1.38009 * 120.00048 * 180.02562 * 11 10 9 13 13 C 1.38928 * 119.99687 * 0.02562 * 12 11 10 14 14 N 1.39985 * 119.99982 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00063 * 35.12073 * 14 13 12 16 16 O 1.21291 * 120.00288 * 355.49806 * 15 14 13 17 17 C 1.50700 * 120.00057 * 175.50108 * 15 14 13 18 18 H 1.09005 * 109.63396 * 299.59147 * 17 15 14 19 19 C 1.53306 * 109.80695 * 179.08262 * 17 15 14 20 20 C 1.52822 * 108.50656 * 170.36961 * 19 17 15 21 21 C 1.50443 * 110.44357 * 51.00818 * 20 19 17 22 22 N 1.32898 * 118.52973 * 162.54076 * 21 20 19 23 23 C 1.31600 * 121.06428 * 179.79563 * 22 21 20 24 24 N 1.31818 * 121.67231 * 359.97438 * 23 22 21 25 25 C 1.32188 * 120.63639 * 0.08261 * 24 23 22 26 26 C 1.37498 * 122.51171 * 342.29601 * 21 20 19 27 27 C 1.50333 * 123.00362 * 0.69733 * 26 21 20 28 28 C 1.38921 * 119.99429 * 0.24645 * 13 12 11 29 29 C 1.38002 * 119.99833 * 359.49555 * 28 13 12 30 30 H 0.97001 * 120.00631 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00531 * 0.02562 * 11 10 9 32 32 H 1.07996 * 119.99924 * 179.97438 * 12 11 10 33 33 H 0.96996 * 120.00129 * 215.12368 * 14 13 12 34 34 H 1.09007 * 109.63238 * 290.07005 * 19 17 15 35 35 H 1.08996 * 109.63784 * 50.46979 * 19 17 15 36 36 H 1.08998 * 109.30729 * 171.30573 * 20 19 17 37 37 H 1.08993 * 109.30720 * 290.70675 * 20 19 17 38 38 H 1.08001 * 119.16496 * 179.97438 * 23 22 21 39 39 H 1.08006 * 120.35897 * 180.02562 * 25 24 23 40 40 H 1.09007 * 109.31181 * 222.13727 * 27 26 21 41 41 H 1.08995 * 109.31044 * 102.53347 * 27 26 21 42 42 H 1.08000 * 119.99569 * 179.74247 * 28 13 12 43 43 H 1.08000 * 119.99795 * 180.25067 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6965 -1.2126 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3350 -2.3680 0.0005 10 6 2.0705 -3.5045 -0.1051 11 6 3.4578 -3.4371 -0.0951 12 6 4.2056 -4.5921 -0.2030 13 6 3.5706 -5.8220 -0.3221 14 7 4.3289 -6.9935 -0.4321 15 6 5.4948 -7.1067 0.2346 16 8 5.9274 -6.1645 0.8641 17 6 6.2610 -8.4038 0.1979 18 1 5.6486 -9.2029 0.6158 19 6 7.5537 -8.2668 1.0106 20 6 8.1839 -9.6513 1.1567 21 6 8.2991 -10.3206 -0.1858 22 7 9.1242 -11.3549 -0.3107 23 6 9.2606 -11.9797 -1.4608 24 7 8.5888 -11.6102 -2.5331 25 6 7.7507 -10.5892 -2.4843 26 6 7.5808 -9.9057 -1.2824 27 6 6.6303 -8.7416 -1.2462 28 6 2.1830 -5.8886 -0.3378 29 6 1.4355 -4.7341 -0.2245 30 1 -0.4851 0.8400 -0.0004 31 1 3.9515 -2.4810 -0.0030 32 1 5.2842 -4.5397 -0.1957 33 1 4.0154 -7.7238 -0.9882 34 1 8.2446 -7.6031 0.4906 35 1 7.3257 -7.8593 1.9955 36 1 9.1765 -9.5510 1.5957 37 1 7.5633 -10.2624 1.8120 38 1 9.9401 -12.8164 -1.5279 39 1 7.2022 -10.2906 -3.3656 40 1 5.7262 -8.9971 -1.7990 41 1 7.1032 -7.8756 -1.7091 42 1 1.6894 -6.8443 -0.4345 43 1 0.3568 -4.7863 -0.2326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645885279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:24 Heat of formation + Delta-G solvation = -16.178739 kcal Electronic energy + Delta-G solvation = -27533.598738 eV Core-core repulsion = 23543.296309 eV Total energy + Delta-G solvation = -3990.302429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41187 -41.49055 -40.41775 -38.46341 -37.49318 -35.46420 -34.99327 -34.15339 -32.46574 -31.84056 -31.52388 -29.39669 -27.32599 -26.29796 -25.31900 -24.00567 -23.96184 -23.22314 -21.87515 -20.71494 -19.91081 -19.22116 -18.73170 -18.06860 -18.02858 -17.64463 -16.68757 -16.26817 -16.22295 -15.85436 -15.69999 -15.47966 -15.23028 -14.98208 -14.91306 -14.84091 -14.62048 -14.43983 -14.14261 -13.98541 -13.56351 -13.35061 -13.19639 -13.06159 -12.85751 -12.68091 -12.44339 -12.16635 -12.14742 -11.94994 -11.83577 -11.40089 -11.37656 -11.07484 -10.71908 -10.48665 -10.19557 -10.16168 -9.81491 -8.59464 -8.46239 -6.12977 -0.07701 0.06896 0.53106 0.58030 1.35087 1.43974 1.50635 1.65749 2.12419 2.18651 2.75700 2.83237 3.03651 3.16272 3.28401 3.43898 3.45364 3.53705 3.62752 3.75632 3.97890 4.11831 4.14487 4.24168 4.28045 4.35242 4.46957 4.50337 4.57181 4.65962 4.69239 4.77822 4.83771 4.90266 5.06082 5.08860 5.11590 5.16070 5.24917 5.37175 5.47261 5.48794 5.61964 5.72238 6.01358 6.02967 6.19367 6.57732 6.98336 7.11166 7.27169 7.78240 8.76107 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.001940 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.563317 B =14427.477273 C =14736.342300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.015 2.985 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.097 0.903 9 O -0.228 6.228 10 C 0.105 3.895 11 C -0.231 4.231 12 C -0.075 4.075 13 C 0.063 3.937 14 N -0.646 5.646 15 C 0.514 3.486 16 O -0.565 6.565 17 C -0.093 4.093 18 H 0.130 0.870 19 C -0.097 4.097 20 C -0.066 4.066 21 C 0.166 3.834 22 N -0.542 5.542 23 C 0.280 3.720 24 N -0.542 5.542 25 C 0.150 3.850 26 C -0.177 4.177 27 C -0.060 4.060 28 C -0.076 4.076 29 C -0.182 4.182 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.426 0.574 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.216 0.784 39 H 0.198 0.802 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.168 0.832 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.419 -24.540 -3.711 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.135 6.135 10 C 0.054 3.946 11 C -0.251 4.251 12 C -0.095 4.095 13 C -0.031 4.031 14 N -0.293 5.293 15 C 0.302 3.698 16 O -0.443 6.443 17 C -0.114 4.114 18 H 0.148 0.852 19 C -0.136 4.136 20 C -0.104 4.104 21 C 0.023 3.977 22 N -0.257 5.257 23 C -0.007 4.007 24 N -0.256 5.256 25 C -0.017 4.017 26 C -0.181 4.181 27 C -0.099 4.099 28 C -0.096 4.096 29 C -0.202 4.202 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.266 0.734 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.232 0.768 39 H 0.214 0.786 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.185 0.815 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.981 -24.538 -3.287 29.467 hybrid contribution -0.408 1.477 -0.066 1.534 sum 15.574 -23.060 -3.353 28.028 Atomic orbital electron populations 1.70170 1.07812 1.28821 1.48764 1.26518 0.96870 1.02550 0.95942 0.84698 0.77452 0.74590 0.79807 1.18256 1.19391 1.18499 1.21708 0.92356 0.81602 1.53248 0.88562 1.83934 1.35634 1.12440 1.81497 1.19965 0.91162 0.88388 0.95056 1.21110 0.93290 0.99431 1.11270 1.20936 0.99807 0.90721 0.98055 1.17377 0.90502 0.86057 1.09133 1.43168 1.21346 1.16613 1.48155 1.21208 0.80747 0.90338 0.77474 1.90732 1.68332 1.41599 1.43598 1.21336 0.97308 0.94235 0.98552 0.85210 1.21370 0.94927 0.95914 1.01380 1.20424 1.03626 0.94885 0.91434 1.21579 0.89055 0.90449 0.96604 1.68434 1.19533 1.09166 1.28540 1.25376 0.94865 0.97527 0.82959 1.68493 1.08722 1.15903 1.32484 1.23909 0.91748 0.88303 0.97742 1.21141 1.01120 1.00489 0.95310 1.20360 0.99241 0.95190 0.95067 1.20797 0.91208 0.98219 0.99397 1.20340 1.00325 0.89759 1.09752 0.91819 0.86760 0.85475 0.73422 0.91759 0.90115 0.88676 0.87634 0.76823 0.78564 0.86174 0.89364 0.81469 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.15 13.67 21.61 0.30 -55.86 16 2 C -0.02 -1.20 5.49 84.82 0.47 -0.74 16 3 Si 1.02 43.39 29.55 68.60 2.03 45.42 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.41 -24.29 9.48 67.91 0.64 -23.65 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 9 O -0.23 -13.69 9.75 -22.88 -0.22 -13.92 16 10 C 0.10 5.18 6.65 22.59 0.15 5.33 16 11 C -0.23 -10.52 9.16 22.37 0.20 -10.31 16 12 C -0.08 -2.84 8.69 22.38 0.19 -2.65 16 13 C 0.06 1.89 6.30 38.17 0.24 2.13 16 14 N -0.65 -12.37 5.26 -303.37 -1.60 -13.96 16 15 C 0.51 10.64 6.99 87.66 0.61 11.25 16 16 O -0.56 -17.60 13.29 -3.06 -0.04 -17.64 16 17 C -0.09 -1.08 2.55 -11.49 -0.03 -1.11 16 18 H 0.13 0.94 8.10 -2.38 -0.02 0.92 16 19 C -0.10 -1.35 4.73 30.64 0.14 -1.21 16 20 C -0.07 -0.78 5.95 29.71 0.18 -0.60 16 21 C 0.17 2.39 6.62 42.14 0.28 2.67 16 22 N -0.54 -9.11 10.32 -188.91 -1.95 -11.06 16 23 C 0.28 4.13 12.29 180.94 2.22 6.35 16 24 N -0.54 -8.31 10.44 -199.69 -2.09 -10.40 16 25 C 0.15 1.70 10.94 84.90 0.93 2.62 16 26 C -0.18 -1.99 5.73 -19.90 -0.11 -2.11 16 27 C -0.06 -0.48 4.86 29.68 0.14 -0.34 16 28 C -0.08 -2.25 9.96 22.38 0.22 -2.03 16 29 C -0.18 -7.24 9.98 22.37 0.22 -7.01 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.11 5.42 5.63 -2.91 -0.02 5.40 16 32 H 0.13 4.76 6.23 -2.91 -0.02 4.74 16 33 H 0.43 4.15 8.32 -92.71 -0.77 3.38 16 34 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 35 H 0.08 1.32 7.80 -2.39 -0.02 1.30 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.22 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.12 0.24 7.74 -2.38 -0.02 0.23 16 41 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 42 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 43 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -81.62 362.03 3.44 -78.18 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.30 Total: 20.63 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 6.71 Total: -21.40 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -5.34 Total: -91.27 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.26 Total: -31.56 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -81.62 3.44 -78.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645885279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.003 kcal (2) G-P(sol) polarization free energy of solvation -81.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds