Wall clock time and date at job start Tue Mar 31 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86794 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47610 * 270.00546 * 3 2 1 5 5 H 1.48501 * 109.46828 * 30.00324 * 3 2 1 6 6 H 1.48500 * 109.47013 * 149.99911 * 3 2 1 7 7 C 1.38640 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 0.02562 * 7 2 1 9 9 O 1.34815 * 119.99850 * 179.97438 * 7 2 1 10 10 C 1.35773 * 116.99614 * 174.96455 * 9 7 2 11 11 C 1.38905 * 120.00249 * 5.34385 * 10 9 7 12 12 C 1.38000 * 120.00532 * 179.97438 * 11 10 9 13 13 C 1.38921 * 119.99811 * 0.02562 * 12 11 10 14 14 N 1.39989 * 120.00723 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99734 * 35.13106 * 14 13 12 16 16 O 1.21295 * 119.99686 * 355.48614 * 15 14 13 17 17 C 1.50695 * 120.00241 * 175.48557 * 15 14 13 18 18 H 1.09008 * 109.78951 * 60.50144 * 17 15 14 19 19 C 1.53301 * 109.63423 * 180.99512 * 17 15 14 20 20 C 1.52808 * 108.52966 * 189.43371 * 19 17 15 21 21 C 1.50447 * 110.45049 * 308.92723 * 20 19 17 22 22 N 1.32889 * 118.54278 * 197.63142 * 21 20 19 23 23 C 1.31602 * 121.06433 * 180.55360 * 22 21 20 24 24 N 1.31815 * 121.66780 * 0.02562 * 23 22 21 25 25 C 1.32190 * 120.64543 * 359.84857 * 24 23 22 26 26 C 1.37762 * 122.57288 * 17.94756 * 21 20 19 27 27 C 1.50343 * 122.79546 * 359.02360 * 26 21 20 28 28 C 1.38923 * 119.99328 * 0.25961 * 13 12 11 29 29 C 1.37997 * 120.00197 * 359.46379 * 28 13 12 30 30 H 0.96998 * 120.00161 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00145 * 359.97438 * 11 10 9 32 32 H 1.08001 * 120.00610 * 180.02562 * 12 11 10 33 33 H 0.96998 * 120.00453 * 215.13627 * 14 13 12 34 34 H 1.08994 * 109.63097 * 309.15180 * 19 17 15 35 35 H 1.09000 * 109.62419 * 69.72712 * 19 17 15 36 36 H 1.08996 * 109.30802 * 188.62533 * 20 19 17 37 37 H 1.08997 * 109.30828 * 69.22472 * 20 19 17 38 38 H 1.07996 * 119.16633 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.36534 * 180.02562 * 25 24 23 40 40 H 1.09003 * 109.30872 * 138.08884 * 27 26 21 41 41 H 1.09005 * 109.30777 * 257.68547 * 27 26 21 42 42 H 1.08011 * 119.99768 * 179.72003 * 28 13 12 43 43 H 1.08001 * 120.00383 * 180.29593 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4473 2.6525 0.7001 6 1 3.5473 1.4399 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3570 -1.2007 -0.0011 10 6 3.9733 -2.4059 0.1046 11 6 3.2214 -3.5738 0.0951 12 6 3.8478 -4.7987 0.2020 13 6 5.2305 -4.8639 0.3196 14 7 5.8661 -6.1064 0.4286 15 6 5.3807 -7.1724 -0.2381 16 8 4.3477 -7.0757 -0.8665 17 6 6.1212 -8.4844 -0.2030 18 1 6.1930 -8.8402 0.8249 19 6 5.3773 -9.5188 -1.0554 20 6 6.0088 -10.8896 -0.8163 21 6 7.5010 -10.8192 -0.9942 22 7 8.1728 -11.9510 -1.1775 23 6 9.4802 -11.9481 -1.3276 24 7 10.1771 -10.8295 -1.3024 25 6 9.5764 -9.6652 -1.1267 26 6 8.1958 -9.6299 -0.9679 27 6 7.5236 -8.2981 -0.7809 28 6 5.9820 -3.6955 0.3351 29 6 5.3559 -2.4709 0.2225 30 1 -0.4850 0.8400 0.0004 31 1 2.1465 -3.5232 0.0040 32 1 3.2633 -5.7068 0.1941 33 1 6.6559 -6.2002 0.9839 34 1 4.3267 -9.5442 -0.7662 35 1 5.4636 -9.2548 -2.1094 36 1 5.5946 -11.6059 -1.5259 37 1 5.7819 -11.2190 0.1976 38 1 9.9951 -12.8858 -1.4752 39 1 10.1518 -8.7515 -1.1072 40 1 8.1162 -7.6878 -0.0994 41 1 7.4492 -7.7936 -1.7443 42 1 7.0566 -3.7459 0.4311 43 1 5.9405 -1.5628 0.2297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645885282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:29 Heat of formation + Delta-G solvation = -13.673699 kcal Electronic energy + Delta-G solvation = -27566.122013 eV Core-core repulsion = 23575.928210 eV Total energy + Delta-G solvation = -3990.193802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.41077 -41.52691 -40.52716 -38.54275 -37.51444 -35.48429 -35.00058 -34.35701 -32.47405 -31.87584 -31.54512 -29.58864 -27.22833 -26.27584 -25.31304 -24.06706 -23.97900 -23.12277 -21.84261 -20.79031 -19.92608 -19.26657 -18.82892 -18.15451 -17.99682 -17.65873 -16.67779 -16.57266 -16.05208 -15.79167 -15.65819 -15.54877 -15.41015 -14.98689 -14.92768 -14.83070 -14.52093 -14.38240 -14.19193 -14.09654 -13.93520 -13.39522 -13.30243 -13.12278 -12.86550 -12.71357 -12.45803 -12.19079 -12.01646 -11.95561 -11.81033 -11.46879 -11.37986 -11.12801 -10.77913 -10.57082 -10.19006 -10.16010 -9.83931 -8.65884 -8.48742 -6.21043 -0.07549 0.07343 0.49271 0.54054 1.33247 1.37636 1.53773 1.62817 2.11268 2.29459 2.75891 2.77772 3.03082 3.05004 3.18676 3.28742 3.44056 3.45888 3.62248 3.76477 3.96293 4.10000 4.12354 4.24027 4.28079 4.34246 4.46904 4.48521 4.57151 4.63705 4.68305 4.75071 4.83556 4.90306 5.05511 5.07376 5.11621 5.21820 5.24380 5.39763 5.48705 5.51108 5.62104 5.76984 5.92842 6.01701 6.22005 6.55950 6.84971 7.11466 7.26195 7.58299 8.63033 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.001959 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.877072 B =14286.328460 C =14973.540268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.399 4.399 8 H 0.075 0.925 9 O -0.241 6.241 10 C 0.110 3.890 11 C -0.226 4.226 12 C -0.082 4.082 13 C 0.072 3.928 14 N -0.646 5.646 15 C 0.513 3.487 16 O -0.566 6.566 17 C -0.093 4.093 18 H 0.131 0.869 19 C -0.098 4.098 20 C -0.066 4.066 21 C 0.166 3.834 22 N -0.543 5.543 23 C 0.280 3.720 24 N -0.542 5.542 25 C 0.150 3.850 26 C -0.177 4.177 27 C -0.059 4.059 28 C -0.077 4.077 29 C -0.169 4.169 30 H 0.284 0.716 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.428 0.572 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.215 0.785 39 H 0.199 0.801 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.176 0.824 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.873 -21.048 1.666 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.093 0.907 9 O -0.149 6.149 10 C 0.061 3.939 11 C -0.246 4.246 12 C -0.102 4.102 13 C -0.022 4.022 14 N -0.293 5.293 15 C 0.302 3.698 16 O -0.443 6.443 17 C -0.115 4.115 18 H 0.149 0.851 19 C -0.137 4.137 20 C -0.104 4.104 21 C 0.023 3.977 22 N -0.258 5.258 23 C -0.007 4.007 24 N -0.256 5.256 25 C -0.017 4.017 26 C -0.181 4.181 27 C -0.097 4.097 28 C -0.096 4.096 29 C -0.188 4.188 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.268 0.732 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.231 0.769 39 H 0.215 0.785 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.194 0.806 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 22.550 -21.588 1.061 31.236 hybrid contribution -0.986 1.143 0.078 1.511 sum 21.564 -20.446 1.139 29.737 Atomic orbital electron populations 1.69751 1.07073 1.29622 1.50195 1.25360 0.95940 1.02415 0.95490 0.85138 0.78892 0.76926 0.79270 1.19153 1.19391 1.18077 1.20667 0.78279 0.95958 1.52629 0.90715 1.83501 1.20973 1.27235 1.83174 1.19725 0.93541 0.84740 0.95931 1.21125 1.00078 0.92912 1.10441 1.20926 0.94425 0.96294 0.98598 1.17443 0.90541 0.86083 1.08142 1.43177 1.31697 1.06205 1.48226 1.21231 0.85048 0.86094 0.77432 1.90751 1.25497 1.84407 1.43684 1.21330 0.95282 0.90800 1.04043 0.85075 1.21373 1.00008 0.92292 0.99998 1.20424 0.87009 0.98109 1.04834 1.21663 0.97663 0.88172 0.90242 1.68426 1.11130 1.31259 1.14948 1.25368 0.86763 0.97772 0.90836 1.68491 1.42008 0.99984 1.15095 1.23824 0.91557 0.97262 0.89010 1.21151 0.96144 0.97056 1.03715 1.20339 0.92928 0.92897 1.03513 1.20883 1.00787 0.88702 0.99255 1.20426 0.90033 0.99823 1.08555 0.90605 0.87965 0.86028 0.73202 0.90167 0.91928 0.88775 0.87578 0.76857 0.78453 0.85892 0.89521 0.80623 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.96 21.61 0.30 -55.77 16 2 C 0.01 0.35 5.49 84.83 0.47 0.81 16 3 Si 0.98 45.23 28.62 68.60 1.96 47.19 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.40 -23.83 9.94 67.92 0.68 -23.15 16 8 H 0.08 4.77 5.43 -2.91 -0.02 4.75 16 9 O -0.24 -13.01 8.58 -22.84 -0.20 -13.20 16 10 C 0.11 5.07 6.65 22.59 0.15 5.22 16 11 C -0.23 -10.40 9.16 22.37 0.20 -10.19 16 12 C -0.08 -3.13 8.69 22.38 0.19 -2.94 16 13 C 0.07 2.03 6.30 38.17 0.24 2.27 16 14 N -0.65 -11.60 5.23 -303.37 -1.59 -13.18 16 15 C 0.51 10.45 6.98 87.65 0.61 11.06 16 16 O -0.57 -17.83 13.28 -3.08 -0.04 -17.88 16 17 C -0.09 -1.05 2.55 -11.50 -0.03 -1.08 16 18 H 0.13 0.86 8.10 -2.38 -0.02 0.84 16 19 C -0.10 -1.38 4.71 30.63 0.14 -1.24 16 20 C -0.07 -0.78 5.96 29.70 0.18 -0.61 16 21 C 0.17 2.37 6.62 42.21 0.28 2.65 16 22 N -0.54 -9.10 10.32 -188.73 -1.95 -11.05 16 23 C 0.28 4.08 12.29 180.94 2.22 6.31 16 24 N -0.54 -8.12 10.44 -199.93 -2.09 -10.21 16 25 C 0.15 1.62 10.94 84.83 0.93 2.55 16 26 C -0.18 -1.93 5.73 -19.90 -0.11 -2.05 16 27 C -0.06 -0.44 4.90 29.68 0.15 -0.29 16 28 C -0.08 -1.97 9.96 22.38 0.22 -1.75 16 29 C -0.17 -5.85 9.98 22.37 0.22 -5.63 16 30 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.10 5.31 5.63 -2.91 -0.02 5.29 16 32 H 0.12 4.74 6.22 -2.91 -0.02 4.73 16 33 H 0.43 3.49 8.60 -92.71 -0.80 2.70 16 34 H 0.08 1.33 7.80 -2.39 -0.02 1.31 16 35 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.12 0.12 7.95 -2.39 -0.02 0.10 16 41 H 0.09 0.82 8.11 -2.38 -0.02 0.80 16 42 H 0.18 2.57 8.06 -2.90 -0.02 2.55 16 43 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -80.56 361.37 3.42 -77.13 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.27 Total: 15.01 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 6.74 Total: -18.05 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -5.32 Total: -90.21 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.24 Total: -31.08 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.96 Total: 47.19 kcal Total: -80.56 3.42 -77.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645885282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.458 kcal (2) G-P(sol) polarization free energy of solvation -80.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds