Wall clock time and date at job start Tue Mar 31 2020 22:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86804 * 119.99753 * 2 1 4 4 H 1.48497 * 109.47291 * 269.99774 * 3 2 1 5 5 H 1.48495 * 109.47194 * 30.00187 * 3 2 1 6 6 H 1.48497 * 109.46760 * 150.00199 * 3 2 1 7 7 C 1.40027 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.41306 * 120.00452 * 359.97438 * 7 2 1 10 10 C 1.40583 * 119.78906 * 180.02562 * 9 7 2 11 11 C 1.38351 * 119.15297 * 179.97438 * 10 9 7 12 12 C 1.38640 * 118.67546 * 0.02562 * 11 10 9 13 13 C 1.39754 * 119.49187 * 359.97438 * 12 11 10 14 14 N 1.38830 * 119.58425 * 179.97438 * 13 12 11 15 15 C 1.46503 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.53000 * 109.47224 * 180.02562 * 15 14 13 17 17 S 1.81404 * 109.47322 * 180.02562 * 16 15 14 18 18 O 1.42101 * 110.53753 * 68.37639 * 17 16 15 19 19 O 1.42093 * 110.54150 * 291.62996 * 17 16 15 20 20 N 1.65592 * 104.44780 * 180.02562 * 17 16 15 21 21 C 1.46504 * 119.99935 * 65.00453 * 20 17 16 22 22 C 1.53003 * 109.46983 * 164.99556 * 21 20 17 23 23 C 1.53786 * 113.61503 * 85.86203 * 22 21 20 24 24 C 1.54049 * 86.98426 * 140.01654 * 23 22 21 25 25 C 1.53781 * 113.61337 * 183.46996 * 22 21 20 26 26 N 1.31976 * 120.83407 * 0.26028 * 13 12 11 27 27 H 0.96997 * 120.00600 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.42964 * 0.02562 * 10 9 7 29 29 H 1.07998 * 120.66596 * 179.97438 * 11 10 9 30 30 H 1.08005 * 120.25406 * 180.02562 * 12 11 10 31 31 H 0.96999 * 120.00225 * 180.02562 * 14 13 12 32 32 H 1.09009 * 109.46786 * 60.00537 * 15 14 13 33 33 H 1.08997 * 109.47618 * 300.00481 * 15 14 13 34 34 H 1.09002 * 109.46945 * 60.00153 * 16 15 14 35 35 H 1.08997 * 109.47203 * 300.00719 * 16 15 14 36 36 H 0.97001 * 120.00075 * 244.99664 * 20 17 16 37 37 H 1.09000 * 109.47232 * 44.99593 * 21 20 17 38 38 H 1.08997 * 109.47041 * 284.99409 * 21 20 17 39 39 H 1.09002 * 112.85017 * 314.66585 * 22 21 20 40 40 H 1.08992 * 113.61675 * 254.61398 * 23 22 21 41 41 H 1.09000 * 113.60973 * 25.51686 * 23 22 21 42 42 H 1.09005 * 113.62125 * 220.02158 * 24 23 22 43 43 H 1.09003 * 113.61268 * 89.11946 * 24 23 22 44 44 H 1.08999 * 113.61567 * 334.48261 * 25 22 21 45 45 H 1.09000 * 113.61379 * 105.30384 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4388 2.6527 0.7001 6 1 3.5388 1.4402 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3011 -2.4365 -0.0005 10 6 2.0085 -3.6513 -0.0005 11 6 1.3036 -4.8418 0.0000 12 6 -0.0820 -4.7944 0.0000 13 6 -0.7281 -3.5552 0.0000 14 7 -2.1155 -3.5056 -0.0006 15 6 -2.8928 -4.7474 -0.0017 16 6 -4.3861 -4.4143 -0.0028 17 16 -5.3487 -5.9519 -0.0034 18 8 -5.1984 -6.6346 1.2337 19 8 -5.1966 -6.6348 -1.2402 20 7 -6.9271 -5.4512 -0.0053 21 6 -7.4620 -4.7190 -1.1560 22 6 -8.9902 -4.7024 -1.0843 23 6 -9.5545 -3.5542 -0.2309 24 6 -10.6519 -3.4060 -1.3018 25 6 -9.6564 -4.0280 -2.2953 26 7 -0.0359 -2.4315 -0.0052 27 1 -0.4851 0.8400 0.0004 28 1 3.0886 -3.6553 -0.0001 29 1 1.8223 -5.7890 -0.0004 30 1 -0.6577 -5.7083 0.0008 31 1 -2.5702 -2.6488 -0.0010 32 1 -2.6505 -5.3285 0.8881 33 1 -2.6497 -5.3275 -0.8919 34 1 -4.6281 -3.8333 -0.8928 35 1 -4.6296 -3.8340 0.8871 36 1 -7.4976 -5.6428 0.7555 37 1 -7.1467 -5.2093 -2.0771 38 1 -7.0864 -3.6959 -1.1421 39 1 -9.4131 -5.6768 -0.8398 40 1 -9.9306 -3.8760 0.7401 41 1 -8.8903 -2.6926 -0.1643 42 1 -10.9046 -2.3700 -1.5278 43 1 -11.5291 -4.0260 -1.1168 44 1 -9.0200 -3.2956 -2.7920 45 1 -10.1135 -4.7322 -2.9904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647153704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:42 Heat of formation + Delta-G solvation = -18.029963 kcal Electronic energy + Delta-G solvation = -26343.687207 eV Core-core repulsion = 22488.748454 eV Total energy + Delta-G solvation = -3854.938752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.43329 -38.34112 -37.25374 -36.12811 -35.71140 -34.99729 -33.43496 -31.30173 -30.22888 -28.16311 -28.10871 -26.02513 -25.38598 -23.49348 -23.17289 -21.47537 -20.46447 -20.02681 -19.40326 -17.91630 -17.38531 -17.00224 -16.75419 -15.95051 -15.92799 -15.37256 -15.02504 -14.94343 -14.68643 -14.46114 -14.31295 -14.09843 -13.32454 -13.03080 -12.88014 -12.72516 -12.65897 -12.49815 -12.27728 -12.25904 -12.18274 -12.01650 -11.75657 -11.72812 -11.19674 -11.13440 -11.01353 -11.00198 -10.74516 -10.65307 -10.59378 -10.44742 -9.95497 -9.78991 -9.54872 -8.95293 -7.94643 -7.55444 -6.60245 -6.36191 -4.49917 0.03546 2.48980 2.84923 3.09161 3.12666 3.20657 3.27262 3.51524 3.96195 4.00597 4.11884 4.14197 4.21183 4.26056 4.42541 4.44199 4.68185 4.74712 4.81801 4.94512 5.13461 5.27472 5.30827 5.33447 5.36853 5.49144 5.51586 5.62616 5.67153 5.73062 5.81519 6.04338 6.04852 6.13861 6.53585 6.64539 6.81343 6.85507 6.89369 7.21529 7.55294 7.76619 7.88245 8.12554 8.29947 8.60553 8.76784 9.07434 10.20233 10.36700 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.002390 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.073037 B =11711.354533 C =13424.852809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.291 3.709 10 C -0.313 4.313 11 C -0.031 4.031 12 C -0.369 4.369 13 C 0.408 3.592 14 N -0.733 5.733 15 C 0.156 3.844 16 C -0.643 4.643 17 S 2.622 3.378 18 O -0.954 6.954 19 O -0.951 6.951 20 N -1.119 6.119 21 C 0.120 3.880 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.135 4.135 26 N -0.530 5.530 27 H 0.269 0.731 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.417 0.583 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.745 -4.658 -1.672 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.102 0.898 9 C 0.164 3.836 10 C -0.336 4.336 11 C -0.055 4.055 12 C -0.395 4.395 13 C 0.168 3.832 14 N -0.372 5.372 15 C 0.028 3.972 16 C -0.772 4.772 17 S 2.713 3.287 18 O -0.944 6.944 19 O -0.941 6.941 20 N -0.878 5.878 21 C -0.006 4.006 22 C -0.138 4.138 23 C -0.177 4.177 24 C -0.181 4.181 25 C -0.173 4.173 26 N -0.251 5.251 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.234 0.766 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.252 0.748 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.945 -4.772 -1.842 21.560 hybrid contribution 0.358 0.936 0.348 1.060 sum -20.587 -3.836 -1.495 20.995 Atomic orbital electron populations 1.70145 1.07186 1.27313 1.29253 1.26056 0.94872 1.00968 0.93509 0.86359 0.80518 0.80941 0.79139 1.19492 1.20271 1.18568 1.19587 0.94197 0.89342 1.43369 0.89811 1.18208 0.86820 0.91924 0.86614 1.21554 0.98503 0.93425 1.20141 1.20610 0.93354 0.96504 0.95023 1.20639 0.94821 0.95430 1.28587 1.18484 0.83954 0.90462 0.90264 1.43947 1.02796 1.05906 1.84512 1.20618 0.85017 0.89532 1.02052 1.30893 1.09963 1.24042 1.12294 1.04667 0.73661 0.76018 0.74362 1.93620 1.85040 1.70630 1.45135 1.93610 1.85132 1.69698 1.45673 1.55593 1.29748 1.74409 1.28073 1.21420 0.94622 0.96086 0.88472 1.22778 0.93492 0.99397 0.98121 1.23082 0.98303 0.98462 0.97852 1.22853 0.97095 1.01313 0.96828 1.22918 0.98252 0.99998 0.96132 1.68185 1.07745 1.24198 1.24980 0.91980 0.88568 0.88715 0.89106 0.76633 0.91553 0.91554 0.84503 0.84246 0.74824 0.89859 0.91472 0.88342 0.91333 0.89683 0.91289 0.90201 0.89604 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.87 11.46 55.55 0.64 -18.23 16 2 C 0.07 1.81 5.50 -17.35 -0.10 1.71 16 3 Si 0.91 18.60 29.56 -169.99 -5.02 13.58 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.43 -11.71 9.14 -37.75 -0.34 -12.05 16 8 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 9 C 0.29 8.14 6.55 -85.00 -0.56 7.58 16 10 C -0.31 -7.98 9.83 -38.66 -0.38 -8.36 16 11 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 12 C -0.37 -8.66 9.34 -38.87 -0.36 -9.02 16 13 C 0.41 10.03 7.65 -155.31 -1.19 8.84 16 14 N -0.73 -14.45 5.72 -60.39 -0.35 -14.80 16 15 C 0.16 2.39 4.89 -4.04 -0.02 2.37 16 16 C -0.64 -6.74 6.19 37.16 0.23 -6.51 16 17 S 2.62 28.02 5.46 -107.50 -0.59 27.43 16 18 O -0.95 -13.27 18.08 -57.54 -1.04 -14.31 16 19 O -0.95 -13.24 17.49 -57.54 -1.01 -14.24 16 20 N -1.12 -8.32 5.89 -10.61 -0.06 -8.38 16 21 C 0.12 0.79 5.96 -4.04 -0.02 0.77 16 22 C -0.12 -0.66 3.77 -89.80 -0.34 -1.00 16 23 C -0.14 -0.73 7.65 -25.77 -0.20 -0.93 16 24 C -0.14 -0.72 8.09 -25.78 -0.21 -0.93 16 25 C -0.13 -0.71 7.64 -25.92 -0.20 -0.91 16 26 N -0.53 -14.64 7.89 -10.33 -0.08 -14.72 16 27 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.09 1.89 6.68 -52.48 -0.35 1.54 16 31 H 0.40 7.56 8.59 -40.82 -0.35 7.21 16 32 H 0.07 1.02 7.92 -51.92 -0.41 0.61 16 33 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 34 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.42 2.49 8.62 -34.46 -0.30 2.20 16 37 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 38 H 0.07 0.35 7.88 -51.93 -0.41 -0.05 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.43 8.10 -51.93 -0.42 0.01 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -35.08 385.77 -12.59 -47.67 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.81 Total: 9.72 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -4.08 Total: -19.55 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.15 Total: -56.13 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -2.05 Total: -28.55 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Atomic # 16 Polarization: 28.02 SS G_CDS: -0.59 Total: 27.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.08 -12.59 -47.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647153704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.643 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds