Wall clock time and date at job start Tue Mar 31 2020 22:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00369 * 2 1 4 4 H 1.48504 * 109.47314 * 270.00330 * 3 2 1 5 5 H 1.48505 * 109.47193 * 30.00588 * 3 2 1 6 6 H 1.48504 * 109.47052 * 150.00151 * 3 2 1 7 7 C 1.37879 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47213 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.46986 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54530 * 291.62628 * 12 11 10 14 14 O 1.42101 * 110.54333 * 68.37799 * 12 11 10 15 15 N 1.65599 * 104.44748 * 180.02562 * 12 11 10 16 16 C 1.46927 * 120.63350 * 90.00165 * 15 12 11 17 17 C 1.53194 * 108.77726 * 233.58522 * 16 15 12 18 18 C 1.53042 * 109.31169 * 305.36481 * 17 16 15 19 19 C 1.53039 * 109.53770 * 61.36342 * 18 17 16 20 20 C 1.46929 * 120.63010 * 269.72153 * 15 12 11 21 21 H 1.09002 * 109.58586 * 246.20035 * 20 15 12 22 22 C 1.50696 * 109.58669 * 6.62182 * 20 15 12 23 23 N 1.31805 * 119.11894 * 44.73601 * 22 20 15 24 24 C 1.32327 * 120.81641 * 179.75909 * 23 22 20 25 25 C 1.38604 * 119.10504 * 0.50282 * 24 23 22 26 26 C 1.38591 * 118.39834 * 359.74525 * 25 24 23 27 27 N 1.31793 * 119.12833 * 224.99934 * 22 20 15 28 28 H 0.97002 * 119.99124 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46554 * 60.00704 * 9 7 2 30 30 H 1.08995 * 109.47565 * 300.00769 * 9 7 2 31 31 H 1.09004 * 109.46811 * 60.00336 * 10 9 7 32 32 H 1.09005 * 109.47229 * 300.00471 * 10 9 7 33 33 H 1.09003 * 109.46593 * 60.00151 * 11 10 9 34 34 H 1.08994 * 109.46870 * 300.00519 * 11 10 9 35 35 H 1.09002 * 109.58380 * 353.37441 * 16 15 12 36 36 H 1.08994 * 109.58784 * 113.65302 * 16 15 12 37 37 H 1.09002 * 109.49393 * 65.31241 * 17 16 15 38 38 H 1.08998 * 109.49581 * 185.40911 * 17 16 15 39 39 H 1.09000 * 109.45587 * 181.38562 * 18 17 16 40 40 H 1.08995 * 109.45652 * 301.34324 * 18 17 16 41 41 H 1.08999 * 109.50028 * 58.58275 * 19 18 17 42 42 H 1.09005 * 109.49834 * 178.65272 * 19 18 17 43 43 H 1.08004 * 120.45084 * 180.27715 * 24 23 22 44 44 H 1.08001 * 120.80060 * 179.73319 * 25 24 23 45 45 H 1.07998 * 120.44793 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 16 2.6587 -6.3659 -0.0004 13 8 3.3565 -6.4262 -1.2369 14 8 3.3545 -6.4264 1.2371 15 7 1.7083 -7.7220 -0.0019 16 6 1.2800 -8.3347 -1.2668 17 6 -0.2452 -8.4772 -1.2541 18 6 -0.6708 -9.2519 -0.0047 19 6 -0.2475 -8.4783 1.2461 20 6 1.2823 -8.3390 1.2617 21 1 1.7406 -9.3231 1.3605 22 6 1.7004 -7.4657 2.4165 23 7 1.5052 -6.1645 2.3400 24 6 1.8551 -5.3668 3.3362 25 6 2.4428 -5.9159 4.4650 26 6 2.6362 -7.2877 4.5063 27 7 2.2562 -8.0228 3.4737 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8904 30 1 0.6244 -2.5571 0.8895 31 1 2.8717 -3.6045 0.8895 32 1 2.8718 -3.6045 -0.8905 33 1 0.8537 -5.0445 -0.8915 34 1 0.8530 -5.0451 0.8885 35 1 1.5808 -7.7001 -2.1004 36 1 1.7401 -9.3172 -1.3711 37 1 -0.7029 -7.4880 -1.2423 38 1 -0.5676 -9.0172 -2.1444 39 1 -1.7537 -9.3761 -0.0058 40 1 -0.1931 -10.2316 -0.0048 41 1 -0.7051 -7.4891 1.2343 42 1 -0.5719 -9.0188 2.1353 43 1 1.6884 -4.3018 3.2691 44 1 2.7430 -5.2899 5.2923 45 1 3.0915 -7.7504 5.3694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656719915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:05 Heat of formation + Delta-G solvation = -4.375134 kcal Electronic energy + Delta-G solvation = -29141.824945 eV Core-core repulsion = 25287.478310 eV Total energy + Delta-G solvation = -3854.346635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19804 -38.56362 -36.87514 -35.62041 -34.63907 -33.57604 -33.21586 -32.39297 -32.07170 -30.28001 -27.68913 -25.46720 -24.54552 -24.04702 -23.56318 -22.39128 -20.82550 -20.12840 -18.81236 -17.81697 -17.50405 -16.65765 -16.42580 -16.20932 -15.66984 -15.24296 -14.90624 -14.70401 -14.64758 -14.45285 -14.35657 -14.11735 -13.68084 -13.49345 -13.29295 -12.73731 -12.48964 -12.20376 -11.94130 -11.86338 -11.71086 -11.64888 -11.50283 -11.29481 -11.15866 -11.06977 -10.90275 -10.81576 -10.72189 -10.57797 -10.46277 -10.28494 -9.89090 -9.47835 -9.28594 -9.16408 -9.09244 -8.81474 -8.39149 -6.04297 -4.07008 0.65438 0.98988 1.23313 2.78590 3.30127 3.36431 3.40123 3.58991 3.82466 4.20051 4.20659 4.43313 4.47071 4.53933 4.72714 4.74477 4.84723 4.97177 5.02944 5.11933 5.16590 5.24756 5.31586 5.34390 5.39490 5.50901 5.52986 5.57485 5.60737 5.76447 5.83299 5.86845 5.93769 6.04777 6.13845 6.18291 6.36102 6.46442 6.55976 6.77175 6.94775 7.05720 7.61611 7.72793 7.94814 8.07719 8.35980 8.99554 9.57464 11.06716 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.003994 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.015611 B = 7009.543119 C = 7940.023033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.099 4.099 11 C -0.600 4.600 12 S 2.610 3.390 13 O -0.975 6.975 14 O -0.971 6.971 15 N -0.997 5.997 16 C 0.123 3.877 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.125 4.125 20 C 0.232 3.768 21 H 0.102 0.898 22 C 0.332 3.668 23 N -0.530 5.530 24 C 0.180 3.820 25 C -0.227 4.227 26 C 0.155 3.845 27 N -0.511 5.511 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.161 0.839 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.174 0.826 44 H 0.146 0.854 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -20.073 5.487 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.139 4.139 11 C -0.733 4.733 12 S 2.710 3.290 13 O -0.966 6.966 14 O -0.960 6.960 15 N -0.834 5.834 16 C -0.002 4.002 17 C -0.178 4.178 18 C -0.151 4.151 19 C -0.165 4.165 20 C 0.123 3.877 21 H 0.119 0.881 22 C 0.064 3.936 23 N -0.247 5.247 24 C 0.015 3.985 25 C -0.249 4.249 26 C -0.010 4.010 27 N -0.226 5.226 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.179 0.821 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.191 0.809 44 H 0.163 0.837 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.104 -20.594 4.713 21.156 hybrid contribution 0.171 1.875 0.748 2.026 sum -0.933 -18.719 5.460 19.522 Atomic orbital electron populations 1.69964 1.06036 1.26656 1.50724 1.25000 0.94845 0.99223 0.95200 0.86601 0.79880 0.83375 0.78210 1.20599 1.21198 1.19812 1.21273 0.93166 0.91003 1.50860 0.92569 1.19018 0.93453 0.90245 0.97653 1.21413 0.99161 0.92262 1.01047 1.30802 1.16200 1.13949 1.12398 1.04990 0.75717 0.75159 0.73130 1.93520 1.71015 1.86178 1.45862 1.93533 1.72356 1.85393 1.44695 1.57846 1.70536 1.44711 1.10282 1.21415 0.94712 0.99530 0.84543 1.21979 0.95722 1.01727 0.98381 1.21442 1.01081 0.98696 0.93850 1.22021 0.93187 1.02351 0.98929 1.19472 0.95501 0.94430 0.78260 0.88059 1.22553 0.89492 0.88290 0.93292 1.67888 1.20665 1.05479 1.30621 1.23065 0.88099 1.00264 0.87110 1.22768 1.03225 0.97571 1.01359 1.23031 0.91779 0.90957 0.95256 1.67950 1.11763 1.41266 1.01586 0.92966 0.96280 0.96116 0.92308 0.92499 0.86711 0.82103 0.88890 0.91086 0.90880 0.90549 0.91293 0.91603 0.90252 0.90687 0.80938 0.83654 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.88 4.97 -27.88 -0.14 0.74 16 10 C -0.10 -2.08 5.16 -26.73 -0.14 -2.22 16 11 C -0.60 -10.26 5.58 37.16 0.21 -10.05 16 12 S 2.61 44.22 4.70 -107.50 -0.51 43.72 16 13 O -0.98 -19.16 16.72 -57.54 -0.96 -20.12 16 14 O -0.97 -18.17 12.81 -57.54 -0.74 -18.91 16 15 N -1.00 -13.14 3.21 -107.46 -0.34 -13.48 16 16 C 0.12 1.30 6.31 -3.71 -0.02 1.28 16 17 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 18 C -0.11 -0.87 5.88 -26.69 -0.16 -1.03 16 19 C -0.13 -1.20 5.38 -26.39 -0.14 -1.34 16 20 C 0.23 2.80 3.29 -68.53 -0.23 2.57 16 21 H 0.10 1.14 8.12 -51.93 -0.42 0.71 16 22 C 0.33 4.73 4.23 -157.19 -0.66 4.06 16 23 N -0.53 -7.86 4.03 -10.72 -0.04 -7.90 16 24 C 0.18 2.47 10.64 -17.20 -0.18 2.29 16 25 C -0.23 -2.59 10.17 -39.32 -0.40 -2.99 16 26 C 0.15 1.79 11.30 -17.21 -0.19 1.59 16 27 N -0.51 -7.07 10.32 -10.73 -0.11 -7.18 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.11 1.80 8.14 -51.92 -0.42 1.38 16 34 H 0.16 2.62 5.53 -51.93 -0.29 2.34 16 35 H 0.09 1.04 7.10 -51.93 -0.37 0.67 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.17 2.19 8.06 -52.48 -0.42 1.77 16 44 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -35.54 368.17 -11.03 -46.57 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.96 Total: 0.78 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -2.63 Total: -19.86 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.24 Total: -54.18 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.70 Total: -39.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 44.22 SS G_CDS: -0.51 Total: 43.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.54 -11.03 -46.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656719915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.194 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds