Wall clock time and date at job start Tue Mar 31 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47491 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46700 * 120.00208 * 3 2 1 6 6 H 1.48491 * 109.46952 * 239.99722 * 3 2 1 7 7 C 1.37880 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47421 * 180.02562 * 10 9 7 12 12 S 1.81404 * 109.47033 * 180.02562 * 11 10 9 13 13 O 1.42107 * 110.54018 * 291.61612 * 12 11 10 14 14 O 1.42097 * 110.54596 * 68.37350 * 12 11 10 15 15 N 1.65602 * 104.44670 * 179.97438 * 12 11 10 16 16 C 1.46920 * 120.63063 * 267.06750 * 15 12 11 17 17 C 1.53202 * 108.77339 * 126.37211 * 16 15 12 18 18 C 1.53033 * 109.31502 * 54.63699 * 17 16 15 19 19 C 1.53044 * 109.53692 * 298.63707 * 18 17 16 20 20 C 1.46932 * 120.62987 * 86.79183 * 15 12 11 21 21 H 1.08996 * 109.58667 * 113.84586 * 20 15 12 22 22 C 1.50694 * 109.58680 * 353.41646 * 20 15 12 23 23 N 1.31798 * 119.12510 * 292.42258 * 22 20 15 24 24 C 1.32337 * 120.82033 * 179.75928 * 23 22 20 25 25 C 1.38599 * 119.10086 * 0.50789 * 24 23 22 26 26 C 1.38595 * 118.40001 * 359.75196 * 25 24 23 27 27 N 1.31795 * 119.12188 * 112.69990 * 22 20 15 28 28 H 0.96992 * 120.00170 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47216 * 299.99652 * 9 7 2 30 30 H 1.09000 * 109.47519 * 60.00164 * 9 7 2 31 31 H 1.09005 * 109.46794 * 299.99916 * 10 9 7 32 32 H 1.09002 * 109.47360 * 59.99233 * 10 9 7 33 33 H 1.09005 * 109.46900 * 299.99645 * 11 10 9 34 34 H 1.08992 * 109.47208 * 59.99456 * 11 10 9 35 35 H 1.09004 * 109.59366 * 246.15669 * 16 15 12 36 36 H 1.09002 * 109.58705 * 6.44134 * 16 15 12 37 37 H 1.09003 * 109.49338 * 174.59457 * 17 16 15 38 38 H 1.08999 * 109.49285 * 294.67672 * 17 16 15 39 39 H 1.09002 * 109.45926 * 58.65321 * 18 17 16 40 40 H 1.08992 * 109.46174 * 178.61665 * 18 17 16 41 41 H 1.09000 * 109.49621 * 181.31977 * 19 18 17 42 42 H 1.09002 * 109.49339 * 301.37834 * 19 18 17 43 43 H 1.07995 * 120.44703 * 180.27959 * 24 23 22 44 44 H 1.07995 * 120.79859 * 179.72536 * 25 24 23 45 45 H 1.08003 * 120.44561 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6963 -1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 16 2.6590 -6.3659 0.0007 13 8 3.3565 -6.4262 -1.2360 14 8 3.3549 -6.4264 1.2381 15 7 1.7086 -7.7220 0.0006 16 6 1.3314 -8.3719 1.2631 17 6 -0.1933 -8.5139 1.3083 18 6 -0.6704 -9.2511 0.0550 19 6 -0.2974 -8.4408 -1.1886 20 6 1.2215 -8.2948 -1.2618 21 1 1.6729 -9.2747 -1.4167 22 6 1.5848 -7.3816 -2.4042 23 7 1.0097 -6.1987 -2.4877 24 6 1.3073 -5.3683 -3.4742 25 6 2.2287 -5.7618 -4.4318 26 6 2.8083 -7.0152 -4.3132 27 7 2.4650 -7.7895 -3.2963 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6240 -2.5567 0.8904 30 1 0.6247 -2.5571 -0.8897 31 1 2.8718 -3.6044 -0.8895 32 1 2.8719 -3.6044 0.8905 33 1 0.8532 -5.0451 0.8897 34 1 0.8538 -5.0446 -0.8902 35 1 1.7920 -9.3583 1.3184 36 1 1.6689 -7.7636 2.1023 37 1 -0.4798 -9.0799 2.1947 38 1 -0.6498 -7.5248 1.3446 39 1 -0.1943 -10.2305 0.0065 40 1 -1.7524 -9.3752 0.0965 41 1 -0.6581 -8.9550 -2.0794 42 1 -0.7535 -7.4526 -1.1291 43 1 0.8357 -4.3985 -3.5343 44 1 2.4885 -5.1077 -5.2510 45 1 3.5306 -7.3552 -5.0405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656719916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:09 Heat of formation + Delta-G solvation = -24.493139 kcal Electronic energy + Delta-G solvation = -29157.796792 eV Core-core repulsion = 25302.577775 eV Total energy + Delta-G solvation = -3855.219017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21623 -38.63578 -36.99550 -35.77483 -34.90662 -33.67940 -33.27578 -32.49481 -32.19836 -30.33345 -27.40722 -25.48546 -24.56477 -24.15869 -23.36136 -22.41874 -21.08156 -20.29508 -18.92266 -17.98596 -17.50557 -16.93028 -16.53130 -16.39085 -15.85195 -15.24224 -14.93433 -14.72640 -14.68394 -14.39293 -14.29160 -13.75681 -13.72449 -13.65567 -13.40514 -13.21670 -12.75779 -12.07217 -12.01721 -11.96018 -11.84758 -11.76739 -11.50776 -11.43412 -11.36111 -11.08937 -10.83410 -10.82235 -10.71075 -10.63753 -10.59061 -10.14092 -10.04772 -9.75868 -9.42839 -9.20290 -9.04188 -8.55290 -8.36482 -6.40158 -4.09779 0.45109 0.89489 1.16763 2.66340 3.42570 3.44399 3.53233 3.63030 3.79264 4.02268 4.12326 4.28834 4.49074 4.52349 4.67388 4.68189 4.79866 4.92455 4.97440 5.06284 5.13162 5.16885 5.21366 5.31817 5.35225 5.39137 5.47598 5.49838 5.56543 5.70822 5.79720 5.83989 5.92240 5.96556 6.00476 6.17043 6.18913 6.36974 6.45665 6.54952 6.74924 7.00556 7.30094 7.42063 8.05289 8.14975 8.41919 8.83883 9.62228 11.00473 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.004032 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.072684 B = 6943.094440 C = 7796.732348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.606 4.606 8 H 0.049 0.951 9 C 0.022 3.978 10 C -0.092 4.092 11 C -0.618 4.618 12 S 2.595 3.405 13 O -0.959 6.959 14 O -0.965 6.965 15 N -0.995 5.995 16 C 0.122 3.878 17 C -0.139 4.139 18 C -0.114 4.114 19 C -0.127 4.127 20 C 0.233 3.767 21 H 0.101 0.899 22 C 0.311 3.689 23 N -0.529 5.529 24 C 0.161 3.839 25 C -0.221 4.221 26 C 0.161 3.839 27 N -0.487 5.487 28 H 0.268 0.732 29 H 0.010 0.990 30 H 0.012 0.988 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.172 0.828 44 H 0.147 0.853 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -20.345 -5.483 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.645 4.645 8 H 0.068 0.932 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.751 4.751 12 S 2.694 3.306 13 O -0.948 6.948 14 O -0.956 6.956 15 N -0.832 5.832 16 C -0.003 4.003 17 C -0.178 4.178 18 C -0.151 4.151 19 C -0.167 4.167 20 C 0.126 3.874 21 H 0.119 0.881 22 C 0.043 3.957 23 N -0.246 5.246 24 C -0.004 4.004 25 C -0.243 4.243 26 C -0.005 4.005 27 N -0.201 5.201 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.177 0.823 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.189 0.811 44 H 0.165 0.835 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.698 -19.362 -4.712 19.940 hybrid contribution -0.084 -0.741 -0.739 1.050 sum -0.782 -20.104 -5.451 20.844 Atomic orbital electron populations 1.70793 1.06845 1.30571 1.46562 1.25851 0.96528 1.02680 0.93650 0.83559 0.74924 0.75297 0.76631 1.20705 1.21369 1.21390 1.22071 0.94415 0.91964 1.56006 0.93222 1.19130 0.94058 0.92006 0.96394 1.21274 0.98892 0.91625 1.01347 1.30897 1.16607 1.14642 1.12926 1.05495 0.75920 0.75286 0.73924 1.93533 1.70768 1.85673 1.44811 1.93537 1.70712 1.86023 1.45281 1.57877 1.70052 1.44468 1.10764 1.21454 0.95264 0.99042 0.84560 1.21972 0.95547 1.01843 0.98407 1.21451 1.01110 0.98649 0.93929 1.21886 0.93499 1.02566 0.98736 1.19308 0.95371 0.94473 0.78289 0.88118 1.22638 0.88464 0.89857 0.94757 1.67986 1.27612 1.04330 1.24642 1.23200 0.91739 0.97925 0.87547 1.22849 1.00152 0.99000 1.02320 1.23060 0.94415 0.89949 0.93104 1.67964 1.11564 1.37413 1.03159 0.92121 0.97133 0.97016 0.92209 0.92131 0.86057 0.82286 0.90909 0.88774 0.90502 0.90982 0.91660 0.91288 0.90842 0.89642 0.81075 0.83537 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 13.65 55.43 0.76 -26.91 16 2 C 0.02 0.48 5.46 -17.81 -0.10 0.39 16 3 Si 1.07 25.30 29.90 -169.99 -5.08 20.21 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.61 -17.37 9.11 -34.44 -0.31 -17.68 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.02 0.57 4.28 -27.88 -0.12 0.45 16 10 C -0.09 -1.98 5.16 -26.73 -0.14 -2.12 16 11 C -0.62 -10.78 5.86 37.16 0.22 -10.56 16 12 S 2.59 44.30 4.77 -107.50 -0.51 43.79 16 13 O -0.96 -18.12 13.87 -57.54 -0.80 -18.92 16 14 O -0.97 -18.89 16.62 -57.54 -0.96 -19.85 16 15 N -0.99 -13.13 3.23 -107.93 -0.35 -13.48 16 16 C 0.12 1.29 6.33 -3.71 -0.02 1.26 16 17 C -0.14 -1.16 6.08 -26.61 -0.16 -1.32 16 18 C -0.11 -0.88 5.89 -26.69 -0.16 -1.04 16 19 C -0.13 -1.23 5.25 -26.83 -0.14 -1.37 16 20 C 0.23 2.82 3.26 -68.97 -0.22 2.60 16 21 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 22 C 0.31 4.42 3.56 -157.19 -0.56 3.87 16 23 N -0.53 -7.59 5.67 -10.73 -0.06 -7.65 16 24 C 0.16 2.13 11.18 -17.20 -0.19 1.94 16 25 C -0.22 -2.53 10.17 -39.32 -0.40 -2.93 16 26 C 0.16 1.93 11.29 -17.20 -0.19 1.74 16 27 N -0.49 -6.98 9.63 -10.73 -0.10 -7.08 16 28 H 0.27 8.07 7.22 -40.82 -0.29 7.78 16 29 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 30 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 34 H 0.16 2.66 5.06 -51.93 -0.26 2.40 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 43 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -36.42 367.86 -10.92 -47.34 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.85 Total: 1.79 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.50 Total: -24.77 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.24 Total: -55.13 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.75 Total: -38.77 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.21 kcal Atomic # 16 Polarization: 44.30 SS G_CDS: -0.51 Total: 43.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.42 -10.92 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656719916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.845 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds