Wall clock time and date at job start Tue Mar 31 2020 22:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47491 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46700 * 120.00208 * 3 2 1 6 6 H 1.48491 * 109.46952 * 239.99722 * 3 2 1 7 7 C 1.37880 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47421 * 180.02562 * 10 9 7 12 12 S 1.81404 * 109.47033 * 180.02562 * 11 10 9 13 13 O 1.42107 * 110.54018 * 291.61612 * 12 11 10 14 14 O 1.42097 * 110.54596 * 68.37350 * 12 11 10 15 15 N 1.65602 * 104.44670 * 179.97438 * 12 11 10 16 16 C 1.46920 * 120.63063 * 267.06750 * 15 12 11 17 17 C 1.53202 * 108.77339 * 126.37211 * 16 15 12 18 18 C 1.53033 * 109.31502 * 54.63699 * 17 16 15 19 19 C 1.53044 * 109.53692 * 298.63707 * 18 17 16 20 20 C 1.46932 * 120.62987 * 86.79183 * 15 12 11 21 21 H 1.08996 * 109.58667 * 113.84586 * 20 15 12 22 22 C 1.50694 * 109.58680 * 353.41646 * 20 15 12 23 23 N 1.31798 * 119.12510 * 292.42258 * 22 20 15 24 24 C 1.32337 * 120.82033 * 179.75928 * 23 22 20 25 25 C 1.38599 * 119.10086 * 0.50789 * 24 23 22 26 26 C 1.38595 * 118.40001 * 359.75196 * 25 24 23 27 27 N 1.31795 * 119.12188 * 112.69990 * 22 20 15 28 28 H 0.96992 * 120.00170 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47216 * 299.99652 * 9 7 2 30 30 H 1.09000 * 109.47519 * 60.00164 * 9 7 2 31 31 H 1.09005 * 109.46794 * 299.99916 * 10 9 7 32 32 H 1.09002 * 109.47360 * 59.99233 * 10 9 7 33 33 H 1.09005 * 109.46900 * 299.99645 * 11 10 9 34 34 H 1.08992 * 109.47208 * 59.99456 * 11 10 9 35 35 H 1.09004 * 109.59366 * 246.15669 * 16 15 12 36 36 H 1.09002 * 109.58705 * 6.44134 * 16 15 12 37 37 H 1.09003 * 109.49338 * 174.59457 * 17 16 15 38 38 H 1.08999 * 109.49285 * 294.67672 * 17 16 15 39 39 H 1.09002 * 109.45926 * 58.65321 * 18 17 16 40 40 H 1.08992 * 109.46174 * 178.61665 * 18 17 16 41 41 H 1.09000 * 109.49621 * 181.31977 * 19 18 17 42 42 H 1.09002 * 109.49339 * 301.37834 * 19 18 17 43 43 H 1.07995 * 120.44703 * 180.27959 * 24 23 22 44 44 H 1.07995 * 120.79859 * 179.72536 * 25 24 23 45 45 H 1.08003 * 120.44561 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6963 -1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 16 2.6590 -6.3659 0.0007 13 8 3.3565 -6.4262 -1.2360 14 8 3.3549 -6.4264 1.2381 15 7 1.7086 -7.7220 0.0006 16 6 1.3314 -8.3719 1.2631 17 6 -0.1933 -8.5139 1.3083 18 6 -0.6704 -9.2511 0.0550 19 6 -0.2974 -8.4408 -1.1886 20 6 1.2215 -8.2948 -1.2618 21 1 1.6729 -9.2747 -1.4167 22 6 1.5848 -7.3816 -2.4042 23 7 1.0097 -6.1987 -2.4877 24 6 1.3073 -5.3683 -3.4742 25 6 2.2287 -5.7618 -4.4318 26 6 2.8083 -7.0152 -4.3132 27 7 2.4650 -7.7895 -3.2963 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6240 -2.5567 0.8904 30 1 0.6247 -2.5571 -0.8897 31 1 2.8718 -3.6044 -0.8895 32 1 2.8719 -3.6044 0.8905 33 1 0.8532 -5.0451 0.8897 34 1 0.8538 -5.0446 -0.8902 35 1 1.7920 -9.3583 1.3184 36 1 1.6689 -7.7636 2.1023 37 1 -0.4798 -9.0799 2.1947 38 1 -0.6498 -7.5248 1.3446 39 1 -0.1943 -10.2305 0.0065 40 1 -1.7524 -9.3752 0.0965 41 1 -0.6581 -8.9550 -2.0794 42 1 -0.7535 -7.4526 -1.1291 43 1 0.8357 -4.3985 -3.5343 44 1 2.4885 -5.1077 -5.2510 45 1 3.5306 -7.3552 -5.0405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656719916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:08 Heat of formation + Delta-G solvation = -48.990711 kcal Electronic energy + Delta-G solvation = -29158.859086 eV Core-core repulsion = 25302.577775 eV Total energy + Delta-G solvation = -3856.281311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18160 -39.49624 -38.40691 -37.21868 -36.82607 -34.75400 -34.16789 -34.12755 -33.37162 -31.19488 -29.31716 -26.41190 -25.57446 -25.41095 -24.92791 -23.34584 -22.78260 -21.28444 -20.06800 -19.30897 -18.88500 -18.48196 -17.63946 -17.51015 -17.30015 -16.26405 -16.15442 -15.86607 -15.69355 -15.55374 -15.47232 -15.29662 -15.16827 -14.65354 -14.56865 -14.34310 -13.95844 -13.68275 -13.60989 -13.32067 -13.20845 -13.13054 -13.06663 -12.63908 -12.58675 -12.31523 -12.17942 -11.99944 -11.95186 -11.80326 -11.69237 -11.51635 -11.49962 -11.40874 -10.72614 -10.57213 -10.39767 -10.21269 -10.00294 -8.71906 -6.43087 -0.89401 -0.06533 0.18734 1.48355 1.51499 1.59167 1.79173 2.53454 2.57575 2.64177 2.85936 2.98817 3.12708 3.20705 3.56762 3.71638 3.78781 3.82027 3.96103 4.05698 4.13308 4.17678 4.22537 4.25927 4.29587 4.33775 4.46419 4.50965 4.67543 4.70796 4.82963 4.84503 4.91706 4.97732 4.98815 5.19492 5.21650 5.21961 5.24730 5.33770 5.49051 5.51854 5.54770 5.93349 6.04586 6.13820 6.53643 7.07024 7.37795 8.69219 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.004032 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.072684 B = 6943.094440 C = 7796.732348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.032 4.032 3 Si 1.114 2.886 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.628 4.628 8 H 0.047 0.953 9 C 0.025 3.975 10 C -0.086 4.086 11 C -0.617 4.617 12 S 2.613 3.387 13 O -0.978 6.978 14 O -0.993 6.993 15 N -0.987 5.987 16 C 0.110 3.890 17 C -0.136 4.136 18 C -0.109 4.109 19 C -0.123 4.123 20 C 0.230 3.770 21 H 0.113 0.887 22 C 0.293 3.707 23 N -0.544 5.544 24 C 0.134 3.866 25 C -0.214 4.214 26 C 0.150 3.850 27 N -0.506 5.506 28 H 0.257 0.743 29 H -0.005 1.005 30 H 0.003 0.997 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.133 0.867 34 H 0.167 0.833 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.177 0.823 44 H 0.178 0.822 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -21.557 -5.972 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.230 4.230 3 Si 0.935 3.065 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.666 4.666 8 H 0.066 0.934 9 C -0.014 4.014 10 C -0.126 4.126 11 C -0.749 4.749 12 S 2.711 3.289 13 O -0.966 6.966 14 O -0.983 6.983 15 N -0.827 5.827 16 C -0.013 4.013 17 C -0.175 4.175 18 C -0.147 4.147 19 C -0.162 4.162 20 C 0.122 3.878 21 H 0.131 0.869 22 C 0.025 3.975 23 N -0.261 5.261 24 C -0.030 4.030 25 C -0.236 4.236 26 C -0.016 4.016 27 N -0.221 5.221 28 H 0.067 0.933 29 H 0.013 0.987 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.184 0.816 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.194 0.806 44 H 0.196 0.804 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.485 -20.581 -5.201 21.234 hybrid contribution -0.167 -0.441 -0.638 0.794 sum -0.652 -21.022 -5.839 21.828 Atomic orbital electron populations 1.70917 1.07764 1.29978 1.48290 1.27374 0.96613 1.06555 0.92494 0.82975 0.74229 0.71234 0.78041 1.20501 1.19719 1.19273 1.22498 0.94671 0.93557 1.55857 0.93430 1.19029 0.94383 0.92824 0.95116 1.21059 0.98159 0.92478 1.00876 1.30871 1.16853 1.13197 1.13951 1.04700 0.75760 0.75605 0.72862 1.93503 1.71648 1.86082 1.45403 1.93498 1.71731 1.86621 1.46474 1.57615 1.69791 1.42862 1.12424 1.21784 0.97168 0.99501 0.82874 1.21989 0.93596 1.01910 0.99995 1.21466 1.02194 0.98754 0.92257 1.21877 0.91545 1.02349 1.00454 1.19593 0.96983 0.94242 0.76942 0.86931 1.23015 0.88767 0.90197 0.95559 1.67934 1.28120 1.04738 1.25277 1.23516 0.92854 0.98335 0.88312 1.23194 0.98792 0.99218 1.02372 1.23724 0.94717 0.90013 0.93158 1.68005 1.11878 1.38257 1.03944 0.93328 0.98654 0.97848 0.92459 0.92817 0.84893 0.81592 0.88750 0.89756 0.87993 0.92077 0.90051 0.89770 0.89650 0.91179 0.80643 0.80436 0.78453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.65 21.45 0.29 -57.09 16 2 C -0.03 -1.88 5.46 84.65 0.46 -1.41 16 3 Si 1.11 50.39 29.90 68.60 2.05 52.44 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.63 -36.52 9.11 25.60 0.23 -36.28 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.02 1.30 4.28 29.85 0.13 1.43 16 10 C -0.09 -3.82 5.16 30.59 0.16 -3.66 16 11 C -0.62 -21.93 5.86 71.98 0.42 -21.51 16 12 S 2.61 89.33 4.77 -56.49 -0.27 89.07 16 13 O -0.98 -36.92 13.87 -127.65 -1.77 -38.69 16 14 O -0.99 -39.09 16.62 -127.65 -2.12 -41.21 16 15 N -0.99 -25.19 3.23 -495.39 -1.60 -26.79 16 16 C 0.11 2.16 6.33 86.37 0.55 2.71 16 17 C -0.14 -1.98 6.08 30.67 0.19 -1.79 16 18 C -0.11 -1.38 5.89 30.62 0.18 -1.20 16 19 C -0.12 -2.17 5.25 30.53 0.16 -2.01 16 20 C 0.23 5.27 3.26 44.08 0.14 5.41 16 21 H 0.11 2.31 8.11 -2.39 -0.02 2.29 16 22 C 0.29 8.16 3.56 138.75 0.49 8.65 16 23 N -0.54 -15.62 5.67 -187.85 -1.07 -16.68 16 24 C 0.13 3.55 11.18 84.70 0.95 4.49 16 25 C -0.21 -4.64 10.17 22.44 0.23 -4.41 16 26 C 0.15 3.37 11.29 84.70 0.96 4.33 16 27 N -0.51 -14.02 9.63 -187.85 -1.81 -15.83 16 28 H 0.26 15.92 7.22 -92.71 -0.67 15.25 16 29 H 0.00 -0.27 8.01 -2.38 -0.02 -0.29 16 30 H 0.00 0.17 8.01 -2.39 -0.02 0.15 16 31 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.13 4.31 8.14 -2.39 -0.02 4.29 16 34 H 0.17 5.69 5.06 -2.39 -0.01 5.68 16 35 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.08 1.82 7.00 -2.39 -0.02 1.81 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.47 7.69 -2.39 -0.02 1.45 16 43 H 0.18 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 45 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -79.05 367.86 0.03 -79.02 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 1.08 Total: 21.01 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 5.25 Total: -45.24 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -4.18 Total: -116.40 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: -3.89 Total: -79.90 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Atomic # 16 Polarization: 89.33 SS G_CDS: -0.27 Total: 89.07 kcal Total: -79.05 0.03 -79.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656719916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.030 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds