Wall clock time and date at job start Tue Mar 31 2020 22:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99499 * 2 1 4 4 H 1.48498 * 109.47139 * 269.99725 * 3 2 1 5 5 H 1.48498 * 109.47381 * 29.99786 * 3 2 1 6 6 H 1.48501 * 109.47019 * 150.00168 * 3 2 1 7 7 C 1.37868 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00228 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47459 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47389 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47340 * 179.97438 * 11 10 9 13 13 O 1.42104 * 110.54095 * 68.37830 * 12 11 10 14 14 O 1.42094 * 110.54433 * 291.62597 * 12 11 10 15 15 N 1.65604 * 104.44936 * 179.97438 * 12 11 10 16 16 C 1.46926 * 120.62802 * 90.00266 * 15 12 11 17 17 C 1.53191 * 108.89109 * 126.46057 * 16 15 12 18 18 C 1.53044 * 109.31440 * 54.56430 * 17 16 15 19 19 C 1.50698 * 109.45870 * 178.61110 * 18 17 16 20 20 N 1.31795 * 119.12153 * 59.73063 * 19 18 17 21 21 C 1.32335 * 120.81936 * 179.75803 * 20 19 18 22 22 C 1.38601 * 119.10243 * 0.50113 * 21 20 19 23 23 C 1.38605 * 118.39720 * 359.75228 * 22 21 20 24 24 N 1.31793 * 119.12519 * 239.99643 * 19 18 17 25 25 C 1.53040 * 109.53662 * 298.63203 * 18 17 16 26 26 C 1.46957 * 120.65390 * 269.81608 * 15 12 11 27 27 H 0.97005 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46724 * 60.00102 * 9 7 2 29 29 H 1.09001 * 109.47235 * 300.00739 * 9 7 2 30 30 H 1.08999 * 109.47182 * 60.00245 * 10 9 7 31 31 H 1.09000 * 109.46986 * 300.00162 * 10 9 7 32 32 H 1.08996 * 109.47368 * 59.99570 * 11 10 9 33 33 H 1.09001 * 109.47073 * 300.00459 * 11 10 9 34 34 H 1.09002 * 109.58861 * 6.60060 * 16 15 12 35 35 H 1.08996 * 109.58519 * 246.31951 * 16 15 12 36 36 H 1.09003 * 109.49294 * 174.51508 * 17 16 15 37 37 H 1.09001 * 109.49969 * 294.57596 * 17 16 15 38 38 H 1.08994 * 109.45986 * 58.65006 * 18 17 16 39 39 H 1.07999 * 120.45272 * 180.23497 * 21 20 19 40 40 H 1.07995 * 120.80187 * 179.77021 * 22 21 20 41 41 H 1.08005 * 120.44225 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.49643 * 181.31582 * 25 18 17 43 43 H 1.08994 * 109.49843 * 301.38341 * 25 18 17 44 44 H 1.09001 * 109.46843 * 113.75659 * 26 15 12 45 45 H 1.08997 * 109.71602 * 353.47153 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5516 -2.6363 0.0001 12 16 6.1564 -4.3465 0.0010 13 8 5.8604 -4.9807 -1.2357 14 8 5.8603 -4.9795 1.2383 15 7 7.8060 -4.2015 0.0003 16 6 8.5522 -4.1351 1.2643 17 6 9.6443 -5.2093 1.2525 18 6 10.5099 -5.0375 0.0021 19 6 11.6063 -6.0714 0.0045 20 7 11.2830 -7.3490 0.0134 21 6 12.2185 -8.2851 0.0110 22 6 13.5516 -7.9058 0.0095 23 6 13.8520 -6.5528 0.0053 24 7 12.8628 -5.6738 0.0029 25 6 9.6445 -5.2149 -1.2477 26 6 8.5523 -4.1407 -1.2642 27 1 -0.4851 0.8401 0.0004 28 1 3.8752 -0.6795 0.8895 29 1 3.8746 -0.6806 -0.8905 30 1 3.6581 -3.1504 -0.8897 31 1 3.6587 -3.1500 0.8903 32 1 5.9149 -2.1224 0.8900 33 1 5.9150 -2.1225 -0.8899 34 1 7.8739 -4.3128 2.0988 35 1 9.0088 -3.1509 1.3677 36 1 10.2657 -5.1060 2.1421 37 1 9.1832 -6.1969 1.2435 38 1 10.9509 -4.0408 -0.0001 39 1 11.9469 -9.3303 0.0145 40 1 14.3373 -8.6468 0.0112 41 1 14.8796 -6.2204 0.0036 42 1 10.2660 -5.1155 -2.1376 43 1 9.1838 -6.2026 -1.2340 44 1 9.0092 -3.1567 -1.3695 45 1 7.8756 -4.3206 -2.0995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657065906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:56 Heat of formation + Delta-G solvation = -61.864516 kcal Electronic energy + Delta-G solvation = -26915.007059 eV Core-core repulsion = 23058.167497 eV Total energy + Delta-G solvation = -3856.839561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06558 -39.41497 -38.24885 -37.02597 -36.49417 -34.81353 -34.63546 -34.24092 -32.07150 -31.78257 -30.13743 -26.65171 -25.48801 -25.32065 -24.38120 -23.61101 -22.20175 -21.38609 -19.79866 -18.96490 -18.84247 -18.36638 -17.72447 -17.29197 -17.27357 -16.23490 -16.21822 -16.16530 -15.88563 -15.44792 -15.37024 -15.07589 -14.90286 -14.59650 -14.54816 -14.24977 -14.02259 -13.64507 -13.54311 -13.26959 -13.19690 -13.17941 -12.93939 -12.68782 -12.53967 -12.32387 -12.15962 -11.92429 -11.83943 -11.80481 -11.76664 -11.64038 -11.43144 -11.39998 -11.17829 -10.77121 -10.39182 -10.17355 -9.94135 -8.29468 -6.35621 -0.76497 -0.04804 0.17646 1.37414 1.40182 1.51885 1.68987 2.36962 2.79045 2.82789 2.90690 3.05511 3.15364 3.25836 3.57273 3.78095 3.78551 3.86971 3.96488 3.99127 4.13791 4.18210 4.23625 4.32897 4.35679 4.44327 4.54159 4.60890 4.73306 4.79093 4.80268 4.83349 4.86769 4.91740 4.92981 4.96227 5.16149 5.23343 5.34387 5.40345 5.46301 5.51030 5.62872 5.66309 6.09765 6.25522 6.72540 7.16112 7.28974 8.87459 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.002144 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.480761 B =13056.553566 C =13421.760458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.545 4.545 8 H 0.028 0.972 9 C -0.005 4.005 10 C -0.105 4.105 11 C -0.606 4.606 12 S 2.614 3.386 13 O -0.990 6.990 14 O -0.990 6.990 15 N -0.997 5.997 16 C 0.114 3.886 17 C -0.114 4.114 18 C -0.015 4.015 19 C 0.308 3.692 20 N -0.542 5.542 21 C 0.132 3.868 22 C -0.222 4.222 23 C 0.136 3.864 24 N -0.538 5.538 25 C -0.114 4.114 26 C 0.114 3.886 27 H 0.267 0.733 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.190 0.810 40 H 0.183 0.817 41 H 0.198 0.802 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.684 -11.456 0.013 37.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.583 4.583 8 H 0.047 0.953 9 C -0.043 4.043 10 C -0.144 4.144 11 C -0.737 4.737 12 S 2.712 3.288 13 O -0.980 6.980 14 O -0.980 6.980 15 N -0.836 5.836 16 C -0.010 4.010 17 C -0.154 4.154 18 C -0.035 4.035 19 C 0.041 3.959 20 N -0.256 5.256 21 C -0.033 4.033 22 C -0.243 4.243 23 C -0.029 4.029 24 N -0.252 5.252 25 C -0.154 4.154 26 C -0.010 4.010 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.207 0.793 40 H 0.200 0.800 41 H 0.215 0.785 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 34.369 -11.529 0.022 36.251 hybrid contribution 0.194 0.185 -0.019 0.269 sum 34.563 -11.344 0.003 36.377 Atomic orbital electron populations 1.70091 1.08535 1.28310 1.52332 1.26139 0.95736 1.03974 0.93876 0.85572 0.79704 0.77451 0.79406 1.18911 1.21150 1.16045 1.21565 0.92431 0.93256 1.51047 0.95329 1.19504 0.93615 0.93404 0.97784 1.21186 0.90741 1.00477 1.01992 1.30541 1.05118 1.24055 1.14018 1.04670 0.73380 0.77970 0.72816 1.93516 1.83842 1.74148 1.46509 1.93515 1.83835 1.74191 1.46485 1.57572 1.23071 1.90012 1.12916 1.21661 0.94363 1.00610 0.84409 1.21788 0.96743 0.99673 0.97177 1.19983 0.90827 0.96344 0.96354 1.23278 0.91314 0.90493 0.90856 1.68242 1.40171 1.02558 1.14622 1.23828 0.89480 1.00479 0.89492 1.23292 0.99411 0.99182 1.02435 1.23886 0.99968 0.89860 0.89179 1.68299 1.01000 1.41048 1.14899 1.21788 0.96747 0.99666 0.97188 1.21667 0.94344 1.00613 0.84409 0.92444 0.94859 0.94989 0.92054 0.92078 0.82655 0.82581 0.89070 0.87671 0.89866 0.92520 0.86931 0.79332 0.79998 0.78511 0.89839 0.92530 0.87682 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.47 13.96 21.44 0.30 -60.17 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 3 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 7 C -0.54 -31.88 9.66 25.60 0.25 -31.63 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 10 C -0.10 -4.06 5.16 30.59 0.16 -3.90 16 11 C -0.61 -15.98 6.18 71.98 0.44 -15.53 16 12 S 2.61 73.88 5.45 -56.49 -0.31 73.57 16 13 O -0.99 -34.24 16.59 -127.65 -2.12 -36.36 16 14 O -0.99 -34.29 16.59 -127.65 -2.12 -36.40 16 15 N -1.00 -20.01 3.23 -512.99 -1.66 -21.67 16 16 C 0.11 1.89 6.43 86.36 0.55 2.44 16 17 C -0.11 -1.99 5.24 30.67 0.16 -1.83 16 18 C -0.01 -0.24 2.49 -11.51 -0.03 -0.27 16 19 C 0.31 5.74 6.34 138.75 0.88 6.62 16 20 N -0.54 -10.42 9.86 -187.84 -1.85 -12.27 16 21 C 0.13 1.63 11.31 84.70 0.96 2.58 16 22 C -0.22 -1.70 10.17 22.44 0.23 -1.48 16 23 C 0.14 1.40 11.31 84.71 0.96 2.36 16 24 N -0.54 -9.06 10.30 -187.84 -1.94 -10.99 16 25 C -0.11 -1.98 5.25 30.67 0.16 -1.82 16 26 C 0.11 1.88 6.42 86.36 0.55 2.44 16 27 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 28 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 29 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.16 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.16 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.09 1.68 6.86 -2.39 -0.02 1.66 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 38 H 0.11 1.53 8.09 -2.39 -0.02 1.51 16 39 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.18 0.00 8.06 -2.91 -0.02 -0.03 16 41 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.26 8.05 -2.39 -0.02 1.25 16 44 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 1.68 6.87 -2.39 -0.02 1.67 16 Total: -1.00 -85.04 377.96 -1.03 -86.07 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.92 Total: 12.71 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 5.86 Total: -39.68 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -5.15 Total: -105.11 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: -4.24 Total: -72.76 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: 73.88 SS G_CDS: -0.31 Total: 73.57 kcal Total: -85.04 -1.03 -86.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657065906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.204 kcal (2) G-P(sol) polarization free energy of solvation -85.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds