Wall clock time and date at job start Tue Mar 31 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46936 * 269.99649 * 3 2 1 5 5 H 1.48500 * 109.46931 * 29.99488 * 3 2 1 6 6 H 1.48494 * 109.47067 * 149.99903 * 3 2 1 7 7 C 1.37874 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00050 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46871 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.46917 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54519 * 68.37681 * 12 11 10 14 14 O 1.42094 * 110.54522 * 291.62437 * 12 11 10 15 15 N 1.65602 * 104.44811 * 179.97438 * 12 11 10 16 16 C 1.46924 * 120.62902 * 90.00535 * 15 12 11 17 17 C 1.53201 * 108.77191 * 233.62516 * 16 15 12 18 18 C 1.53038 * 109.31572 * 305.36631 * 17 16 15 19 19 C 1.50696 * 109.46081 * 181.38287 * 18 17 16 20 20 C 1.38616 * 120.44991 * 274.97767 * 19 18 17 21 21 C 1.38580 * 118.39982 * 180.02562 * 20 19 18 22 22 N 1.32343 * 119.10476 * 0.02562 * 21 20 19 23 23 C 1.31781 * 120.82134 * 359.97438 * 22 21 20 24 24 N 1.31814 * 121.75251 * 0.02562 * 23 22 21 25 25 C 1.53043 * 109.53720 * 61.36142 * 18 17 16 26 26 C 1.46924 * 120.62885 * 270.01983 * 15 12 11 27 27 H 0.97002 * 120.00398 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47092 * 60.00064 * 9 7 2 29 29 H 1.08999 * 109.46825 * 299.99744 * 9 7 2 30 30 H 1.08998 * 109.47493 * 59.99619 * 10 9 7 31 31 H 1.09005 * 109.47200 * 299.99875 * 10 9 7 32 32 H 1.08992 * 109.47144 * 59.99941 * 11 10 9 33 33 H 1.08999 * 109.46895 * 299.99547 * 11 10 9 34 34 H 1.09001 * 109.59090 * 113.84185 * 16 15 12 35 35 H 1.09001 * 109.70638 * 353.48297 * 16 15 12 36 36 H 1.08994 * 109.49404 * 185.41053 * 17 16 15 37 37 H 1.09002 * 109.52012 * 65.33643 * 17 16 15 38 38 H 1.08997 * 109.45955 * 301.35874 * 18 17 16 39 39 H 1.08003 * 120.79945 * 0.04195 * 20 19 18 40 40 H 1.07998 * 120.44592 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.12513 * 180.28711 * 23 22 21 42 42 H 1.08999 * 109.49541 * 58.58930 * 25 18 17 43 43 H 1.08997 * 109.49869 * 178.68532 * 25 18 17 44 44 H 1.09006 * 109.58865 * 246.15453 * 26 15 12 45 45 H 1.08996 * 109.59239 * 6.44081 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 16 6.1562 -4.3467 0.0016 13 8 5.8601 -4.9808 -1.2352 14 8 5.8602 -4.9799 1.2387 15 7 7.8058 -4.2017 0.0007 16 6 8.5521 -4.1356 1.2646 17 6 9.4374 -2.8854 1.2496 18 6 10.3195 -2.9048 -0.0009 19 6 11.2160 -1.6935 -0.0017 20 6 10.7630 -0.4846 -0.5066 21 6 11.6232 0.6017 -0.4869 22 7 12.8406 0.4500 0.0095 23 6 13.2370 -0.7149 0.4811 24 7 12.4465 -1.7697 0.4787 25 6 9.4362 -2.8862 -1.2505 26 6 8.5509 -4.1364 -1.2639 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1502 -0.8892 31 1 3.6579 -3.1506 0.8908 32 1 5.9149 -2.1227 0.8909 33 1 5.9148 -2.1226 -0.8891 34 1 9.1757 -5.0237 1.3677 35 1 7.8549 -4.0797 2.1006 36 1 10.0673 -2.8751 2.1391 37 1 8.8095 -1.9946 1.2382 38 1 10.9295 -3.8080 -0.0010 39 1 9.7637 -0.3916 -0.9056 40 1 11.3044 1.5592 -0.8715 41 1 14.2348 -0.8068 0.8842 42 1 8.8079 -1.9956 -1.2387 43 1 10.0653 -2.8764 -2.1406 44 1 9.1744 -5.0245 -1.3670 45 1 7.8513 -4.0824 -2.0979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662481006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:01 Heat of formation + Delta-G solvation = -37.145465 kcal Electronic energy + Delta-G solvation = -27354.889331 eV Core-core repulsion = 23499.121668 eV Total energy + Delta-G solvation = -3855.767663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53286 -38.95627 -37.09294 -35.87934 -34.91828 -34.82308 -33.32208 -32.25277 -31.55577 -31.15956 -28.42472 -26.10710 -24.93131 -23.73030 -23.65191 -22.97930 -20.90813 -20.28975 -18.97667 -17.97903 -17.75504 -17.21973 -16.94820 -16.36685 -16.06791 -15.80418 -15.29471 -15.05036 -14.76864 -14.52023 -14.39780 -14.24881 -14.13002 -13.99335 -13.66981 -12.97581 -12.86625 -12.42940 -12.30794 -12.19953 -11.97959 -11.92608 -11.79570 -11.66000 -11.62260 -11.43867 -11.26729 -11.02631 -10.99051 -10.85983 -10.75797 -10.14188 -9.97835 -9.92858 -9.80953 -9.61946 -9.32724 -9.14034 -8.62549 -6.11894 -4.11388 0.29308 0.50412 0.64700 2.58387 3.22635 3.30393 3.31959 3.35450 3.47736 3.78646 3.88976 3.99546 4.12896 4.25808 4.36452 4.42285 4.48370 4.62380 4.68060 4.69010 4.87066 4.94989 5.00012 5.01022 5.10799 5.14734 5.21687 5.31223 5.38010 5.39643 5.44485 5.53007 5.61942 5.68958 5.84856 5.85915 5.99027 6.07946 6.21510 6.33540 6.60583 6.62146 7.07604 7.21879 7.67201 7.68185 8.43970 8.92565 9.49048 11.01440 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003220 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.121401 B = 8692.949299 C =10800.478373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.098 4.098 11 C -0.616 4.616 12 S 2.599 3.401 13 O -0.956 6.956 14 O -0.956 6.956 15 N -1.005 6.005 16 C 0.124 3.876 17 C -0.125 4.125 18 C -0.039 4.039 19 C 0.186 3.814 20 C -0.224 4.224 21 C 0.149 3.851 22 N -0.527 5.527 23 C 0.294 3.706 24 N -0.519 5.519 25 C -0.133 4.133 26 C 0.123 3.877 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.195 0.805 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.103 -3.589 -0.825 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.696 3.304 13 O -0.947 6.947 14 O -0.946 6.946 15 N -0.842 5.842 16 C -0.002 4.002 17 C -0.165 4.165 18 C -0.058 4.058 19 C 0.039 3.961 20 C -0.246 4.246 21 C -0.016 4.016 22 N -0.241 5.241 23 C 0.006 3.994 24 N -0.233 5.233 25 C -0.172 4.172 26 C -0.002 4.002 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.168 0.832 40 H 0.186 0.814 41 H 0.212 0.788 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 27.420 -4.407 -0.455 27.776 hybrid contribution -0.216 1.950 -0.347 1.992 sum 27.204 -2.457 -0.802 27.327 Atomic orbital electron populations 1.69905 1.06292 1.27009 1.50614 1.25026 0.94752 0.99161 0.94458 0.86779 0.80308 0.83666 0.78510 1.20214 1.21241 1.19109 1.21135 0.89254 0.94777 1.51407 0.90725 1.19519 0.97337 0.90692 0.96642 1.21316 0.86678 1.02944 1.02781 1.30665 1.09403 1.23642 1.11002 1.05451 0.72444 0.78233 0.74275 1.93573 1.82685 1.73133 1.45271 1.93573 1.82668 1.73163 1.45233 1.57953 1.24752 1.89943 1.11509 1.21385 0.95728 0.97735 0.85323 1.21981 0.98062 0.99403 0.97077 1.20126 0.94375 0.94888 0.96395 1.21706 0.90714 0.94732 0.88899 1.22881 1.03298 0.94786 1.03599 1.23284 0.88429 0.99009 0.90874 1.68425 1.17374 1.26719 1.11552 1.24993 0.99435 0.83236 0.91689 1.68267 1.04846 1.33170 1.17043 1.22108 0.98390 0.99547 0.97193 1.21378 0.95778 0.97706 0.85350 0.92592 0.96235 0.96672 0.91020 0.91001 0.85523 0.85514 0.90652 0.88485 0.90139 0.90853 0.88294 0.83184 0.81419 0.78822 0.90531 0.90180 0.90721 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.53 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C 0.00 -0.07 4.04 -27.88 -0.11 -0.19 16 10 C -0.10 -1.83 5.16 -26.73 -0.14 -1.97 16 11 C -0.62 -8.23 6.18 37.16 0.23 -8.00 16 12 S 2.60 34.71 5.41 -107.50 -0.58 34.13 16 13 O -0.96 -15.40 16.72 -57.54 -0.96 -16.37 16 14 O -0.96 -15.55 16.73 -57.54 -0.96 -16.51 16 15 N -1.00 -9.54 3.22 -113.51 -0.37 -9.91 16 16 C 0.12 0.99 6.31 -3.71 -0.02 0.97 16 17 C -0.13 -0.87 5.34 -26.61 -0.14 -1.01 16 18 C -0.04 -0.26 2.50 -91.73 -0.23 -0.49 16 19 C 0.19 1.48 5.82 -82.25 -0.48 1.00 16 20 C -0.22 -1.59 9.26 -39.32 -0.36 -1.95 16 21 C 0.15 1.11 11.30 -17.21 -0.19 0.91 16 22 N -0.53 -4.73 10.44 -14.58 -0.15 -4.88 16 23 C 0.29 2.43 12.29 -92.15 -1.13 1.30 16 24 N -0.52 -4.69 10.38 -10.80 -0.11 -4.80 16 25 C -0.13 -0.80 4.77 -26.61 -0.13 -0.93 16 26 C 0.12 0.94 6.32 -3.71 -0.02 0.92 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.82 7.11 -51.93 -0.37 0.45 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.15 0.80 6.48 -52.48 -0.34 0.46 16 40 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.08 0.43 6.66 -51.93 -0.35 0.08 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.77 7.09 -51.93 -0.37 0.40 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -36.52 375.43 -11.39 -47.91 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.85 Total: -2.26 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.17 Total: -22.69 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.14 Total: -46.20 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.92 Total: -32.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 34.71 SS G_CDS: -0.58 Total: 34.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.52 -11.39 -47.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662481006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.765 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds