Wall clock time and date at job start Tue Mar 31 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46936 * 269.99649 * 3 2 1 5 5 H 1.48500 * 109.46931 * 29.99488 * 3 2 1 6 6 H 1.48494 * 109.47067 * 149.99903 * 3 2 1 7 7 C 1.37874 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00050 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46871 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.46917 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54519 * 68.37681 * 12 11 10 14 14 O 1.42094 * 110.54522 * 291.62437 * 12 11 10 15 15 N 1.65602 * 104.44811 * 179.97438 * 12 11 10 16 16 C 1.46924 * 120.62902 * 90.00535 * 15 12 11 17 17 C 1.53201 * 108.77191 * 233.62516 * 16 15 12 18 18 C 1.53038 * 109.31572 * 305.36631 * 17 16 15 19 19 C 1.50696 * 109.46081 * 181.38287 * 18 17 16 20 20 C 1.38616 * 120.44991 * 274.97767 * 19 18 17 21 21 C 1.38580 * 118.39982 * 180.02562 * 20 19 18 22 22 N 1.32343 * 119.10476 * 0.02562 * 21 20 19 23 23 C 1.31781 * 120.82134 * 359.97438 * 22 21 20 24 24 N 1.31814 * 121.75251 * 0.02562 * 23 22 21 25 25 C 1.53043 * 109.53720 * 61.36142 * 18 17 16 26 26 C 1.46924 * 120.62885 * 270.01983 * 15 12 11 27 27 H 0.97002 * 120.00398 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47092 * 60.00064 * 9 7 2 29 29 H 1.08999 * 109.46825 * 299.99744 * 9 7 2 30 30 H 1.08998 * 109.47493 * 59.99619 * 10 9 7 31 31 H 1.09005 * 109.47200 * 299.99875 * 10 9 7 32 32 H 1.08992 * 109.47144 * 59.99941 * 11 10 9 33 33 H 1.08999 * 109.46895 * 299.99547 * 11 10 9 34 34 H 1.09001 * 109.59090 * 113.84185 * 16 15 12 35 35 H 1.09001 * 109.70638 * 353.48297 * 16 15 12 36 36 H 1.08994 * 109.49404 * 185.41053 * 17 16 15 37 37 H 1.09002 * 109.52012 * 65.33643 * 17 16 15 38 38 H 1.08997 * 109.45955 * 301.35874 * 18 17 16 39 39 H 1.08003 * 120.79945 * 0.04195 * 20 19 18 40 40 H 1.07998 * 120.44592 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.12513 * 180.28711 * 23 22 21 42 42 H 1.08999 * 109.49541 * 58.58930 * 25 18 17 43 43 H 1.08997 * 109.49869 * 178.68532 * 25 18 17 44 44 H 1.09006 * 109.58865 * 246.15453 * 26 15 12 45 45 H 1.08996 * 109.59239 * 6.44081 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 16 6.1562 -4.3467 0.0016 13 8 5.8601 -4.9808 -1.2352 14 8 5.8602 -4.9799 1.2387 15 7 7.8058 -4.2017 0.0007 16 6 8.5521 -4.1356 1.2646 17 6 9.4374 -2.8854 1.2496 18 6 10.3195 -2.9048 -0.0009 19 6 11.2160 -1.6935 -0.0017 20 6 10.7630 -0.4846 -0.5066 21 6 11.6232 0.6017 -0.4869 22 7 12.8406 0.4500 0.0095 23 6 13.2370 -0.7149 0.4811 24 7 12.4465 -1.7697 0.4787 25 6 9.4362 -2.8862 -1.2505 26 6 8.5509 -4.1364 -1.2639 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6804 -0.8889 30 1 3.6585 -3.1502 -0.8892 31 1 3.6579 -3.1506 0.8908 32 1 5.9149 -2.1227 0.8909 33 1 5.9148 -2.1226 -0.8891 34 1 9.1757 -5.0237 1.3677 35 1 7.8549 -4.0797 2.1006 36 1 10.0673 -2.8751 2.1391 37 1 8.8095 -1.9946 1.2382 38 1 10.9295 -3.8080 -0.0010 39 1 9.7637 -0.3916 -0.9056 40 1 11.3044 1.5592 -0.8715 41 1 14.2348 -0.8068 0.8842 42 1 8.8079 -1.9956 -1.2387 43 1 10.0653 -2.8764 -2.1406 44 1 9.1744 -5.0245 -1.3670 45 1 7.8513 -4.0824 -2.0979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662481006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:00 Heat of formation + Delta-G solvation = -62.370900 kcal Electronic energy + Delta-G solvation = -27355.983188 eV Core-core repulsion = 23499.121668 eV Total energy + Delta-G solvation = -3856.861520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06050 -39.54804 -38.24972 -37.04085 -36.49295 -35.48831 -34.23989 -33.87721 -32.12215 -31.71483 -30.14006 -26.71253 -25.49114 -25.34918 -24.21882 -23.62797 -22.24929 -21.22529 -19.86116 -18.99975 -18.81404 -18.31478 -17.81795 -17.32422 -17.25290 -16.35360 -16.22328 -16.08654 -15.81581 -15.45060 -15.35380 -15.07463 -14.83874 -14.72247 -14.62997 -14.24497 -14.07189 -13.64756 -13.56559 -13.21916 -13.18073 -13.16134 -12.89262 -12.68679 -12.54093 -12.37532 -12.21250 -12.00964 -11.87813 -11.83971 -11.63491 -11.40379 -11.40088 -11.32620 -11.20392 -10.77004 -10.49013 -10.21233 -9.93947 -8.29272 -6.35438 -0.75784 -0.01783 0.11758 1.37093 1.40283 1.51603 1.68227 2.36976 2.81516 2.83617 2.98009 3.06039 3.15013 3.32165 3.48851 3.62731 3.79354 3.87404 3.94227 3.98514 4.13204 4.17013 4.21025 4.35120 4.37642 4.43051 4.60102 4.61570 4.67060 4.82145 4.83037 4.85447 4.87652 4.92064 4.96890 5.01266 5.13603 5.24040 5.34940 5.37059 5.47170 5.49573 5.63410 5.65865 6.08769 6.25882 6.73226 7.14507 7.29347 8.87841 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003220 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.121401 B = 8692.949299 C =10800.478373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.236 1.236 7 C -0.545 4.545 8 H 0.028 0.972 9 C -0.003 4.003 10 C -0.104 4.104 11 C -0.609 4.609 12 S 2.615 3.385 13 O -0.988 6.988 14 O -0.991 6.991 15 N -0.995 5.995 16 C 0.119 3.881 17 C -0.120 4.120 18 C -0.034 4.034 19 C 0.176 3.824 20 C -0.223 4.223 21 C 0.140 3.860 22 N -0.548 5.548 23 C 0.284 3.716 24 N -0.539 5.539 25 C -0.127 4.127 26 C 0.116 3.884 27 H 0.267 0.733 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.191 0.809 41 H 0.213 0.787 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.032 -1.803 -1.214 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.583 4.583 8 H 0.046 0.954 9 C -0.042 4.042 10 C -0.143 4.143 11 C -0.740 4.740 12 S 2.712 3.288 13 O -0.978 6.978 14 O -0.981 6.981 15 N -0.834 5.834 16 C -0.006 4.006 17 C -0.159 4.159 18 C -0.053 4.053 19 C 0.030 3.970 20 C -0.244 4.244 21 C -0.024 4.024 22 N -0.263 5.263 23 C -0.004 4.004 24 N -0.253 5.253 25 C -0.167 4.167 26 C -0.009 4.009 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.189 0.811 40 H 0.208 0.792 41 H 0.230 0.770 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 30.361 -2.651 -0.846 30.488 hybrid contribution -1.144 1.295 -0.228 1.743 sum 29.217 -1.356 -1.074 29.268 Atomic orbital electron populations 1.70088 1.08615 1.28315 1.52408 1.26139 0.95691 1.03985 0.93893 0.85583 0.79725 0.77446 0.79441 1.18786 1.21366 1.15939 1.21581 0.92519 0.93201 1.50959 0.95372 1.19490 0.93502 0.93441 0.97743 1.21175 0.90786 1.00420 1.01948 1.30569 1.05111 1.24388 1.13911 1.04696 0.73310 0.77957 0.72809 1.93529 1.83816 1.74075 1.46408 1.93527 1.83844 1.74180 1.46532 1.57620 1.23072 1.89738 1.12934 1.21552 0.95703 0.98985 0.84345 1.21930 0.97859 0.98809 0.97349 1.20093 0.94212 0.94442 0.96577 1.21930 0.90629 0.95470 0.88969 1.23106 1.04093 0.94175 1.03055 1.23755 0.88062 1.00223 0.90405 1.68462 1.18382 1.27098 1.12354 1.25407 1.00245 0.83070 0.91661 1.68287 1.05582 1.33618 1.17829 1.22093 0.98211 0.99002 0.97354 1.21610 0.95863 0.99199 0.84184 0.92465 0.94982 0.94889 0.92018 0.92221 0.82905 0.82450 0.89669 0.88944 0.89955 0.90267 0.88527 0.81114 0.79175 0.77029 0.89360 0.88884 0.89753 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 2 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 3 Si 0.96 42.11 27.47 68.60 1.88 43.99 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 7 C -0.54 -31.06 9.66 25.60 0.25 -30.81 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C 0.00 -0.14 4.04 29.85 0.12 -0.02 16 10 C -0.10 -3.81 5.16 30.59 0.16 -3.65 16 11 C -0.61 -14.50 6.18 71.98 0.44 -14.05 16 12 S 2.61 66.22 5.41 -56.49 -0.31 65.92 16 13 O -0.99 -31.10 16.72 -127.65 -2.13 -33.23 16 14 O -0.99 -31.76 16.73 -127.65 -2.14 -33.89 16 15 N -0.99 -16.49 3.22 -513.05 -1.65 -18.14 16 16 C 0.12 1.63 6.31 86.37 0.55 2.18 16 17 C -0.12 -1.30 5.34 30.67 0.16 -1.14 16 18 C -0.03 -0.36 2.50 -11.51 -0.03 -0.38 16 19 C 0.18 2.34 5.82 42.57 0.25 2.59 16 20 C -0.22 -2.43 9.26 22.44 0.21 -2.22 16 21 C 0.14 1.71 11.30 84.70 0.96 2.67 16 22 N -0.55 -8.86 10.44 -200.05 -2.09 -10.95 16 23 C 0.28 4.26 12.29 180.88 2.22 6.48 16 24 N -0.54 -8.76 10.38 -188.07 -1.95 -10.71 16 25 C -0.13 -1.08 4.77 30.67 0.15 -0.93 16 26 C 0.12 1.44 6.32 86.36 0.55 1.99 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 29 H 0.03 1.32 7.57 -2.39 -0.02 1.31 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.15 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.39 7.11 -2.39 -0.02 1.37 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.17 1.05 6.48 -2.91 -0.02 1.03 16 40 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.09 0.57 6.66 -2.39 -0.02 0.55 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.10 1.27 7.09 -2.39 -0.02 1.25 16 Total: -1.00 -81.54 375.43 -0.72 -82.26 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.93 Total: 11.06 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: 6.44 Total: -36.88 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -5.39 Total: -99.22 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -4.27 Total: -67.13 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 43.99 kcal Atomic # 16 Polarization: 66.22 SS G_CDS: -0.31 Total: 65.92 kcal Total: -81.54 -0.72 -82.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662481006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.886 kcal (2) G-P(sol) polarization free energy of solvation -81.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds