Wall clock time and date at job start Tue Mar 31 2020 23:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70456 * 124.59053 * 2 1 4 4 C 1.75503 * 92.44389 * 180.02562 * 3 2 1 5 5 C 1.32771 * 110.57876 * 359.73905 * 4 3 2 6 6 C 1.36010 * 124.59212 * 180.02562 * 2 1 3 7 7 C 1.47189 * 123.46340 * 359.93501 * 6 2 1 8 8 O 1.21636 * 119.99751 * 0.02562 * 7 6 2 9 9 N 1.34773 * 119.99967 * 180.02562 * 7 6 2 10 10 C 1.46496 * 119.99934 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47392 * 54.99840 * 11 10 9 13 13 C 1.53003 * 109.46945 * 294.99481 * 11 10 9 14 14 C 1.53006 * 109.47452 * 174.99751 * 11 10 9 15 15 N 1.46898 * 109.47138 * 184.99841 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46948 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46809 * 120.00147 * 24 22 20 27 27 H 1.48497 * 109.47378 * 239.99941 * 24 22 20 28 28 H 1.09003 * 109.46892 * 269.95474 * 1 2 3 29 29 H 1.09000 * 109.46919 * 29.95905 * 1 2 3 30 30 H 1.09004 * 109.46797 * 149.95728 * 1 2 3 31 31 H 1.08005 * 124.70943 * 179.97438 * 4 3 2 32 32 H 1.08003 * 123.45886 * 180.24458 * 5 4 3 33 33 H 0.97001 * 120.00253 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47613 * 59.99832 * 10 9 7 35 35 H 1.09003 * 109.47151 * 300.00236 * 10 9 7 36 36 H 1.08996 * 109.47132 * 299.99905 * 13 11 10 37 37 H 1.09000 * 109.46878 * 60.00403 * 13 11 10 38 38 H 1.08999 * 109.47096 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.46770 * 64.99788 * 14 11 10 40 40 H 1.08995 * 109.47019 * 305.00001 * 14 11 10 41 41 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 42 42 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 43 43 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 44 44 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 45 45 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9606 0.4694 -0.0008 5 6 3.6944 -0.8313 0.0046 6 6 2.2792 -1.1197 -0.0005 7 6 1.7291 -2.4849 0.0003 8 8 0.5247 -2.6553 0.0010 9 7 2.5599 -3.5461 0.0002 10 6 2.0124 -4.9049 0.0004 11 6 3.1597 -5.9171 0.0010 12 1 3.8219 -5.7152 0.8428 13 6 3.9457 -5.7977 -1.3063 14 6 2.5915 -7.3321 0.1270 15 7 3.6952 -8.2940 0.2479 16 6 3.1863 -9.6666 0.3705 17 6 4.3446 -10.6229 0.4915 18 8 5.4822 -10.2024 0.4775 19 7 4.1164 -11.9455 0.6153 20 6 5.1702 -12.8154 0.7259 21 1 6.1831 -12.4411 0.7134 22 6 4.9351 -14.1789 0.8540 23 7 3.7025 -14.6344 0.8697 24 14 6.3709 -15.3643 1.0040 25 1 7.6463 -14.6050 0.9602 26 1 6.2754 -16.0969 2.2922 27 1 6.3323 -16.3335 -0.1205 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 4.9538 0.8939 -0.0014 32 1 4.4578 -1.5953 0.0091 33 1 3.5203 -3.4102 0.0001 34 1 1.3999 -5.0501 -0.8894 35 1 1.4001 -5.0498 0.8905 36 1 3.2835 -5.9996 -2.1481 37 1 4.3505 -4.7896 -1.3960 38 1 4.7628 -6.5191 -1.3061 39 1 2.0006 -7.5665 -0.7584 40 1 1.9588 -7.3920 1.0124 41 1 4.2955 -8.0599 1.0244 42 1 2.5573 -9.7430 1.2575 43 1 2.5997 -9.9169 -0.5135 44 1 3.2067 -12.2817 0.6268 45 1 3.5383 -15.5863 0.9588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666546960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:54 Heat of formation + Delta-G solvation = -78.100306 kcal Electronic energy + Delta-G solvation = -25500.413688 eV Core-core repulsion = 21642.870090 eV Total energy + Delta-G solvation = -3857.543598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07089 -40.16401 -38.52427 -37.71784 -36.20882 -35.67836 -33.52912 -33.18005 -32.73648 -29.05699 -28.55855 -27.27568 -26.46172 -24.86034 -23.79936 -22.51238 -21.60542 -21.01827 -20.25791 -19.86161 -18.25477 -17.80262 -17.67822 -17.00231 -16.84501 -16.56445 -16.40430 -16.02164 -15.70999 -15.46377 -15.19072 -14.90816 -14.70757 -14.44181 -14.35594 -14.20806 -13.88413 -13.59706 -13.54107 -13.40035 -13.16745 -13.05338 -12.98957 -12.83971 -12.56623 -12.40346 -12.11339 -12.01677 -11.97478 -11.94279 -11.71538 -11.50877 -10.83356 -10.33821 -10.17645 -10.01142 -9.72581 -9.38391 -9.29341 -8.46567 -5.95375 -0.19677 0.54943 0.96698 1.00982 1.37052 1.42334 1.56583 2.05781 2.21762 2.30928 2.33450 2.96425 3.20897 3.53398 3.71933 3.81846 3.87094 3.98761 4.06364 4.18767 4.33381 4.40706 4.48573 4.50402 4.58845 4.62818 4.63724 4.65253 4.76236 4.83637 4.95480 4.99082 5.05659 5.08562 5.19772 5.30725 5.30844 5.41442 5.45944 5.53747 5.89016 6.10499 6.42337 6.52710 6.60301 7.12894 7.20315 7.56755 8.11765 8.71039 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036776 B = 0.001460 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.186974 B =19171.614349 C =19751.924922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.161 4.161 3 S 0.213 5.787 4 C -0.232 4.232 5 C -0.115 4.115 6 C -0.199 4.199 7 C 0.573 3.427 8 O -0.576 6.576 9 N -0.710 5.710 10 C 0.133 3.867 11 C -0.087 4.087 12 H 0.084 0.916 13 C -0.136 4.136 14 C 0.067 3.933 15 N -0.677 5.677 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.196 0.804 32 H 0.168 0.832 33 H 0.412 0.588 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.345 0.655 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 32.310 -1.588 32.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.282 4.282 3 S 0.479 5.521 4 C -0.367 4.367 5 C -0.143 4.143 6 C -0.216 4.216 7 C 0.361 3.639 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.008 3.992 11 C -0.106 4.106 12 H 0.102 0.898 13 C -0.194 4.194 14 C -0.063 4.063 15 N -0.309 5.309 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.213 0.787 32 H 0.185 0.815 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.276 33.743 -2.261 34.228 hybrid contribution 0.461 -2.703 0.979 2.912 sum -4.815 31.040 -1.282 31.438 Atomic orbital electron populations 1.20594 0.86925 1.04180 1.03558 1.24825 1.02411 0.98171 1.02766 1.82988 0.94478 1.05709 1.68899 1.25811 1.03482 0.96939 1.10436 1.21387 0.93659 0.97526 1.01768 1.20236 0.94171 0.92837 1.14343 1.17904 0.85759 0.84726 0.75550 1.90719 1.16004 1.86751 1.52290 1.45754 1.10598 1.05318 1.74529 1.21263 0.95748 0.80078 1.02066 1.21201 0.96403 0.92818 1.00180 0.89797 1.21707 1.00217 1.01595 0.95848 1.21962 0.92183 0.90639 1.01474 1.60027 1.19915 1.00107 1.50848 1.21528 0.93899 0.88599 1.02765 1.20882 0.91112 0.83340 0.82083 1.90485 1.25448 1.78048 1.56873 1.41948 1.09371 1.05350 1.64486 1.19719 0.89089 0.88370 1.49183 0.90255 1.26050 1.00270 0.98660 0.96335 1.69683 1.20404 1.15921 1.50171 0.84858 0.77571 0.77543 0.78276 1.19744 1.19618 1.19663 0.90212 0.89654 0.90082 0.78673 0.81509 0.75075 0.91730 0.91828 0.93080 0.91808 0.92694 0.90324 0.94069 0.83677 0.91646 0.87939 0.77000 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.60 71.24 0.68 -0.84 16 2 C -0.16 -2.65 6.34 25.17 0.16 -2.49 16 3 S 0.21 2.20 22.97 -56.49 -1.30 0.90 16 4 C -0.23 -2.10 11.12 66.64 0.74 -1.36 16 5 C -0.12 -1.35 9.91 22.67 0.22 -1.13 16 6 C -0.20 -3.52 5.98 -19.87 -0.12 -3.64 16 7 C 0.57 12.47 7.79 86.59 0.67 13.14 16 8 O -0.58 -16.35 14.06 -4.15 -0.06 -16.41 16 9 N -0.71 -11.96 5.26 -466.62 -2.46 -14.42 16 10 C 0.13 2.39 5.06 86.38 0.44 2.83 16 11 C -0.09 -1.54 2.57 -10.79 -0.03 -1.57 16 12 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 13 C -0.14 -2.56 8.95 71.98 0.64 -1.92 16 14 C 0.07 1.44 5.07 86.31 0.44 1.88 16 15 N -0.68 -20.13 5.58 -517.92 -2.89 -23.02 16 16 C 0.06 2.17 6.17 85.56 0.53 2.70 16 17 C 0.44 20.72 7.82 87.66 0.69 21.40 16 18 O -0.62 -34.16 15.78 -3.06 -0.05 -34.21 16 19 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 20 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 24 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.73 5.94 -2.38 -0.01 1.72 16 31 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16 32 H 0.17 1.16 7.10 -2.91 -0.02 1.13 16 33 H 0.41 4.89 6.20 -92.71 -0.57 4.31 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.93 7.18 -2.39 -0.02 0.91 16 38 H 0.05 1.32 7.75 -2.39 -0.02 1.30 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.34 10.70 8.43 -89.69 -0.76 9.94 16 42 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.40 19.34 7.90 -92.71 -0.73 18.60 16 45 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -72.66 389.87 -0.73 -73.40 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -1.02 Total: 38.87 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.35 Total: 10.54 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -6.68 Total: -118.05 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.11 Total: -50.62 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.30 Total: 0.90 kcal Total: -72.66 -0.73 -73.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666546960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.703 kcal (2) G-P(sol) polarization free energy of solvation -72.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds