Wall clock time and date at job start Tue Mar 31 2020 22:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48502 * 109.46876 * 269.99154 * 3 2 1 5 5 H 1.48498 * 109.47204 * 29.99213 * 3 2 1 6 6 H 1.48497 * 109.47037 * 149.99431 * 3 2 1 7 7 C 1.37876 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99986 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46820 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47099 * 180.02562 * 11 10 9 13 13 O 1.42093 * 110.54280 * 68.37580 * 12 11 10 14 14 O 1.42107 * 110.54180 * 291.62711 * 12 11 10 15 15 N 1.65601 * 104.44925 * 180.02562 * 12 11 10 16 16 C 1.47310 * 121.21604 * 278.94651 * 15 12 11 17 17 C 1.53218 * 109.63029 * 119.17395 * 16 15 12 18 18 C 1.50699 * 109.67032 * 46.45739 * 17 16 15 19 19 N 1.33543 * 128.32061 * 160.12596 * 18 17 16 20 20 C 1.30764 * 109.26599 * 179.76000 * 19 18 17 21 21 N 1.35375 * 108.78969 * 0.03941 * 20 19 18 22 22 H 0.96998 * 126.51160 * 180.10215 * 21 20 19 23 23 C 1.35460 * 124.00665 * 340.04761 * 18 17 16 24 24 C 1.46955 * 121.21586 * 98.92182 * 15 12 11 25 25 C 1.52943 * 113.99667 * 350.51168 * 24 15 12 26 26 C 1.53931 * 86.84918 * 90.39396 * 25 24 15 27 27 C 1.52964 * 113.96026 * 89.38356 * 24 15 12 28 28 H 0.97000 * 120.00157 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46821 * 60.00282 * 9 7 2 30 30 H 1.08991 * 109.46816 * 300.00282 * 9 7 2 31 31 H 1.08996 * 109.46914 * 60.00045 * 10 9 7 32 32 H 1.08994 * 109.47040 * 299.99917 * 10 9 7 33 33 H 1.09008 * 109.46773 * 60.00353 * 11 10 9 34 34 H 1.09000 * 109.47029 * 300.00483 * 11 10 9 35 35 H 1.08998 * 109.44773 * 359.12429 * 16 15 12 36 36 H 1.08999 * 109.44147 * 239.22029 * 16 15 12 37 37 H 1.08997 * 109.43929 * 286.39998 * 17 16 15 38 38 H 1.08999 * 109.43848 * 166.51542 * 17 16 15 39 39 H 1.08004 * 125.60770 * 180.02562 * 20 19 18 40 40 H 1.09003 * 113.65567 * 204.88502 * 25 24 15 41 41 H 1.09000 * 113.65120 * 335.90821 * 25 24 15 42 42 H 1.08997 * 113.59042 * 270.25323 * 26 25 24 43 43 H 1.08991 * 113.59610 * 139.41653 * 26 25 24 44 44 H 1.09007 * 113.64892 * 24.05636 * 27 24 15 45 45 H 1.08995 * 113.65642 * 155.08688 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 16 6.1561 -4.3469 0.0000 13 8 5.8600 -4.9798 -1.2372 14 8 5.8600 -4.9811 1.2367 15 7 7.8058 -4.2019 0.0008 16 6 8.5496 -3.9391 -1.2433 17 6 9.3047 -2.6115 -1.1208 18 6 10.0171 -2.5536 0.2059 19 7 11.0450 -1.7784 0.5606 20 6 11.3666 -2.0301 1.8029 21 7 10.5396 -2.9890 2.2817 22 1 10.5507 -3.3674 3.1747 23 6 9.6920 -3.3200 1.2744 24 6 8.5811 -4.3303 1.2426 25 6 7.7246 -4.3719 2.5090 26 6 7.6978 -5.9015 2.3384 27 6 9.0170 -5.7622 1.5575 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8752 -0.6804 -0.8888 31 1 3.6585 -3.1502 -0.8892 32 1 3.6578 -3.1506 0.8907 33 1 5.9148 -2.1229 0.8911 34 1 5.9148 -2.1227 -0.8890 35 1 7.8517 -3.8839 -2.0787 36 1 9.2610 -4.7463 -1.4181 37 1 8.5979 -1.7846 -1.1894 38 1 10.0335 -2.5329 -1.9276 39 1 12.1616 -1.5519 2.3559 40 1 8.2512 -4.0409 3.4042 41 1 6.7482 -3.9017 2.3922 42 1 6.8665 -6.2581 1.7302 43 1 7.8015 -6.4470 3.2763 44 1 9.0751 -6.4049 0.6790 45 1 9.9055 -5.8206 2.1862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671665697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:54 Heat of formation + Delta-G solvation = 37.447985 kcal Electronic energy + Delta-G solvation = -28804.776599 eV Core-core repulsion = 24952.243550 eV Total energy + Delta-G solvation = -3852.533048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.66656 -39.85836 -37.30190 -36.01062 -35.55907 -34.83695 -32.77913 -32.23252 -30.83859 -29.09959 -28.41826 -26.12308 -24.67979 -23.78101 -23.52931 -22.13000 -20.64461 -20.04709 -19.83073 -18.65221 -18.20609 -17.22696 -16.91131 -16.55633 -16.04957 -15.72093 -15.57475 -15.02620 -14.73321 -14.68220 -14.21257 -14.17977 -13.92145 -13.44729 -13.02760 -12.96694 -12.66531 -12.55688 -12.39912 -12.35777 -12.12481 -11.90610 -11.71185 -11.54975 -11.17075 -11.12039 -10.99275 -10.96192 -10.69613 -10.35327 -10.19294 -10.10635 -9.95298 -9.86297 -9.70861 -9.30701 -9.13682 -8.59776 -8.40002 -6.09682 -4.09104 0.23087 1.69367 2.40196 2.81554 2.83760 3.26415 3.34230 3.36404 3.77675 3.98349 4.07200 4.20966 4.37273 4.39642 4.46613 4.65348 4.74761 4.79568 4.89710 4.93559 5.04639 5.09750 5.24165 5.29591 5.34201 5.37700 5.48170 5.53691 5.65552 5.70698 5.73475 5.80604 5.92072 5.97330 6.09644 6.14855 6.23405 6.24969 6.45949 6.61090 6.64207 7.06859 7.11148 7.24789 7.69617 7.81028 8.45970 8.94421 9.51591 11.03542 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.003666 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.823675 B = 7635.411782 C = 8530.654658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.096 4.096 11 C -0.615 4.615 12 S 2.589 3.411 13 O -0.951 6.951 14 O -0.937 6.937 15 N -0.978 5.978 16 C 0.123 3.877 17 C -0.055 4.055 18 C 0.015 3.985 19 N -0.484 5.484 20 C 0.178 3.822 21 N -0.550 5.550 22 H 0.420 0.580 23 C -0.020 4.020 24 C 0.242 3.758 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.148 4.148 28 H 0.264 0.736 29 H 0.020 0.980 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.210 0.790 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.122 -9.340 4.516 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.135 4.135 11 C -0.747 4.747 12 S 2.689 3.311 13 O -0.942 6.942 14 O -0.928 6.928 15 N -0.812 5.812 16 C -0.002 4.002 17 C -0.095 4.095 18 C -0.115 4.115 19 N -0.203 5.203 20 C -0.104 4.104 21 N -0.152 5.152 22 H 0.258 0.742 23 C -0.139 4.139 24 C 0.151 3.849 25 C -0.189 4.189 26 C -0.178 4.178 27 C -0.188 4.188 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.226 0.774 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 24.870 -9.457 3.910 26.893 hybrid contribution 0.467 1.174 1.104 1.677 sum 25.336 -8.283 5.013 27.123 Atomic orbital electron populations 1.69907 1.06275 1.27000 1.50670 1.25012 0.94741 0.99137 0.94416 0.86799 0.80334 0.83661 0.78628 1.20135 1.21240 1.19078 1.21125 0.89211 0.94766 1.51424 0.90713 1.19528 0.97328 0.90666 0.96764 1.21310 0.86476 1.02999 1.02738 1.30663 1.09392 1.23317 1.11288 1.05842 0.72154 0.78405 0.74721 1.93579 1.82203 1.73024 1.45362 1.93605 1.83263 1.72280 1.43621 1.57791 1.23906 1.87558 1.11951 1.21492 0.96697 0.96912 0.85135 1.20288 0.98425 0.98065 0.92716 1.20415 0.97227 0.97562 0.96339 1.69916 1.14298 1.24679 1.11370 1.25080 0.98939 0.94143 0.92270 1.42657 1.26727 1.32266 1.13538 0.74183 1.20530 0.98871 1.04256 0.90236 1.18920 0.89057 0.91981 0.84924 1.23645 1.01033 0.99610 0.94641 1.23565 0.97516 0.95380 1.01333 1.23393 0.98951 0.95238 1.01223 0.92605 0.96214 0.96578 0.91036 0.90945 0.85438 0.85453 0.88060 0.90276 0.89964 0.89048 0.77388 0.90263 0.87800 0.85294 0.91694 0.90371 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.53 -14.91 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 10 C -0.10 -1.83 5.16 -26.73 -0.14 -1.96 16 11 C -0.62 -8.86 6.18 37.16 0.23 -8.63 16 12 S 2.59 35.12 4.93 -107.50 -0.53 34.58 16 13 O -0.95 -15.48 17.03 -57.54 -0.98 -16.46 16 14 O -0.94 -13.55 10.25 -57.54 -0.59 -14.14 16 15 N -0.98 -10.85 3.07 -100.98 -0.31 -11.16 16 16 C 0.12 1.18 6.31 -3.49 -0.02 1.15 16 17 C -0.06 -0.55 6.39 -27.77 -0.18 -0.72 16 18 C 0.02 0.18 7.05 -82.84 -0.58 -0.41 16 19 N -0.48 -5.80 11.24 -10.68 -0.12 -5.92 16 20 C 0.18 1.49 13.05 -89.85 -1.17 0.32 16 21 N -0.55 -4.14 6.14 -10.39 -0.06 -4.20 16 22 H 0.42 1.80 8.96 -40.82 -0.37 1.44 16 23 C -0.02 -0.21 6.31 -82.10 -0.52 -0.72 16 24 C 0.24 2.48 1.36 -133.02 -0.18 2.30 16 25 C -0.15 -1.57 6.68 -26.28 -0.18 -1.75 16 26 C -0.14 -1.46 7.23 -25.77 -0.19 -1.65 16 27 C -0.15 -1.35 7.47 -26.26 -0.20 -1.54 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 30 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.10 0.89 7.27 -51.93 -0.38 0.51 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.21 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 41 H 0.10 1.24 5.52 -51.92 -0.29 0.96 16 42 H 0.13 1.62 5.21 -54.03 -0.28 1.34 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.08 0.61 8.11 -51.93 -0.42 0.18 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -36.22 362.78 -11.42 -47.64 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.73 Total: 1.39 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -3.66 Total: -27.18 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.28 Total: -48.11 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.57 Total: -30.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 35.12 SS G_CDS: -0.53 Total: 34.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.22 -11.42 -47.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671665697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.089 kcal (2) G-P(sol) polarization free energy of solvation -36.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds