Wall clock time and date at job start Tue Mar 31 2020 23:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 110.28809 * 2 1 4 4 N 1.46901 * 109.46916 * 300.69646 * 3 2 1 5 5 C 1.46905 * 110.99870 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47066 * 180.02562 * 5 4 3 7 7 C 1.41381 * 126.80142 * 94.99787 * 6 5 4 8 8 C 1.35448 * 103.98735 * 179.97438 * 7 6 5 9 9 O 1.34042 * 106.44749 * 0.02562 * 8 7 6 10 10 N 1.20922 * 111.56414 * 359.70291 * 9 8 7 11 11 C 1.54620 * 110.32664 * 122.13049 * 2 1 3 12 12 C 1.55109 * 102.75651 * 97.20919 * 11 2 1 13 13 N 1.48113 * 103.31560 * 37.26647 * 12 11 2 14 14 C 1.34779 * 127.03513 * 140.72559 * 13 12 11 15 15 O 1.21279 * 120.00124 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.99764 * 0.04586 * 14 13 12 17 17 S 1.81001 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00278 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99566 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00516 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99604 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00241 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47335 * 90.00242 * 22 20 18 24 24 H 1.48500 * 109.47484 * 210.00144 * 22 20 18 25 25 H 1.48508 * 109.47388 * 330.00112 * 22 20 18 26 26 C 1.47480 * 105.93502 * 320.76206 * 13 12 11 27 27 H 1.09002 * 109.46962 * 59.30389 * 1 2 3 28 28 H 1.08994 * 109.46891 * 179.29848 * 1 2 3 29 29 H 1.08995 * 109.47444 * 299.30306 * 1 2 3 30 30 H 1.09004 * 109.46889 * 180.70026 * 3 2 1 31 31 H 1.08995 * 109.47384 * 60.69667 * 3 2 1 32 32 H 1.00901 * 111.00067 * 303.95263 * 4 3 2 33 33 H 1.09001 * 109.46798 * 300.00327 * 5 4 3 34 34 H 1.08998 * 109.46961 * 60.00043 * 5 4 3 35 35 H 1.08004 * 128.00714 * 359.97323 * 7 6 5 36 36 H 1.07998 * 126.77671 * 180.02562 * 8 7 6 37 37 H 1.09005 * 110.73647 * 215.48612 * 11 2 1 38 38 H 1.08998 * 110.73840 * 338.81343 * 11 2 1 39 39 H 1.09000 * 110.58832 * 278.82367 * 12 11 2 40 40 H 1.09007 * 110.82261 * 155.81402 * 12 11 2 41 41 H 1.09000 * 109.47498 * 299.99264 * 16 14 13 42 42 H 1.09001 * 109.47349 * 59.99814 * 16 14 13 43 43 H 0.96995 * 120.00069 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.91833 * 266.09278 * 26 13 12 45 45 H 1.09004 * 110.07770 * 144.89591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 7 1.5671 2.1395 -1.1910 5 6 2.0580 3.5237 -1.2250 6 6 1.5320 4.2131 -2.4575 7 6 0.3744 5.0197 -2.5477 8 6 0.3388 5.3969 -3.8482 9 8 1.4048 4.8353 -4.4355 10 7 2.0563 4.1883 -3.6487 11 6 2.0671 -0.7711 1.2278 12 6 2.3641 -2.1779 0.6458 13 7 2.8825 -1.8835 -0.7101 14 6 3.8948 -2.5068 -1.3451 15 8 4.2159 -2.1590 -2.4617 16 6 4.6274 -3.6363 -0.6679 17 16 5.9212 -4.2619 -1.7682 18 6 6.5966 -5.5345 -0.7539 19 1 6.1881 -5.7151 0.2294 20 6 7.6535 -6.3049 -1.2186 21 7 8.1516 -6.0845 -2.4169 22 14 8.3699 -7.6536 -0.1430 23 1 7.6523 -8.9275 -0.4026 24 1 9.8112 -7.8245 -0.4574 25 1 8.2159 -7.2812 1.2864 26 6 2.0651 -0.7682 -1.2228 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0275 -0.0126 29 1 -0.3634 0.5029 0.8961 30 1 3.1504 1.4196 -0.0126 31 1 1.7148 1.9503 0.8961 32 1 1.8199 1.6457 -2.0338 33 1 1.7126 4.0536 -0.3373 34 1 3.1478 3.5223 -1.2462 35 1 -0.3207 5.2759 -1.7617 36 1 -0.4023 6.0258 -4.3189 37 1 2.9796 -0.3091 1.6049 38 1 1.3099 -0.8272 2.0099 39 1 1.4505 -2.7695 0.5881 40 1 3.1174 -2.6928 1.2421 41 1 5.0792 -3.2743 0.2557 42 1 3.9261 -4.4388 -0.4392 43 1 8.8900 -6.6230 -2.7419 44 1 1.2331 -1.1569 -1.8101 45 1 2.6767 -0.1077 -1.8376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671708611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:47 Heat of formation + Delta-G solvation = 31.370563 kcal Electronic energy + Delta-G solvation = -26380.163610 eV Core-core repulsion = 22527.367025 eV Total energy + Delta-G solvation = -3852.796585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.24180 -40.21018 -38.11388 -36.49384 -34.30455 -32.66145 -32.42464 -31.87377 -29.67785 -29.44717 -27.61251 -26.08998 -25.43584 -24.74476 -23.45586 -22.75335 -21.33601 -19.44944 -19.24158 -18.16877 -17.84195 -17.62085 -16.79533 -16.28630 -15.67743 -15.61881 -15.10911 -15.03734 -14.80115 -14.59769 -14.20796 -13.90315 -13.79604 -13.50103 -13.12066 -12.91317 -12.81598 -12.59048 -12.45604 -12.22154 -12.20142 -12.02211 -11.72971 -11.56240 -11.06191 -11.03138 -11.01552 -10.91944 -10.82087 -10.74874 -10.48589 -9.98669 -9.81044 -9.39095 -9.06386 -8.84995 -8.53715 -8.22542 -6.49892 -6.21147 -3.91918 1.19260 1.86384 2.91743 2.95343 3.07328 3.22442 3.26201 3.30508 3.62127 3.66145 3.98565 4.18426 4.20018 4.26475 4.38291 4.57729 4.80733 4.90024 4.92448 4.97640 5.03198 5.06249 5.13756 5.14939 5.21298 5.30712 5.38765 5.43821 5.47038 5.50846 5.59824 5.66180 5.66729 5.72387 5.79629 5.90399 5.91974 5.95997 6.12862 6.13456 6.38938 6.52703 6.91040 7.59713 7.72120 7.95436 8.35528 8.57613 9.23863 10.86314 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.002089 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.799449 B =13401.546735 C =14530.097202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C 0.073 3.927 4 N -0.682 5.682 5 C 0.137 3.863 6 C 0.017 3.983 7 C -0.218 4.218 8 C -0.064 4.064 9 O 0.102 5.898 10 N -0.358 5.358 11 C -0.125 4.125 12 C 0.101 3.899 13 N -0.628 5.628 14 C 0.550 3.450 15 O -0.516 6.516 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.116 3.884 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.347 0.653 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.171 0.829 36 H 0.216 0.784 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.619 22.075 7.310 31.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.056 4.056 4 N -0.316 5.316 5 C 0.007 3.993 6 C -0.142 4.142 7 C -0.240 4.240 8 C -0.146 4.146 9 O 0.034 5.966 10 N -0.061 5.061 11 C -0.163 4.163 12 C -0.023 4.023 13 N -0.366 5.366 14 C 0.339 3.661 15 O -0.390 6.390 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.008 4.008 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.167 0.833 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.189 0.811 36 H 0.232 0.768 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.402 22.069 5.210 29.843 hybrid contribution 0.226 -1.052 2.272 2.514 sum -19.175 21.017 7.482 29.417 Atomic orbital electron populations 1.21743 0.92523 1.01442 1.02724 1.21509 0.96940 0.93754 0.95104 1.22033 0.97246 0.92998 0.93340 1.60556 1.63197 1.01642 1.06176 1.20164 0.97526 0.89281 0.92285 1.23520 0.95251 1.00810 0.94621 1.22703 1.00405 1.02869 0.98043 1.26048 0.93539 1.01297 0.93672 1.84868 1.29598 1.47408 1.34687 1.73919 1.17805 1.12706 1.01682 1.22853 1.01689 0.95141 0.96665 1.22525 0.99499 0.96805 0.83435 1.48818 1.34234 1.35679 1.17825 1.20027 0.77978 0.82518 0.85566 1.90714 1.64697 1.64785 1.18814 1.23497 1.03253 0.98224 1.04664 1.85427 1.34625 1.42049 1.21315 1.22855 1.21124 1.20183 1.04145 0.90937 1.25000 0.95735 0.97418 0.95481 1.70020 1.24552 1.39008 1.16670 0.86160 0.78207 0.81013 0.80068 1.20258 1.20745 1.19698 1.22040 0.94513 0.88667 0.95554 0.91242 0.92856 0.92493 0.94442 0.90223 0.83320 0.88658 0.93159 0.81119 0.76758 0.90603 0.89727 0.91013 0.89760 0.89352 0.89304 0.92174 0.91559 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 8.05 37.16 0.30 -0.65 16 2 C -0.07 -0.63 0.76 -153.13 -0.12 -0.74 16 3 C 0.07 0.60 4.41 -3.82 -0.02 0.58 16 4 N -0.68 -5.99 5.74 -115.05 -0.66 -6.65 16 5 C 0.14 1.13 6.27 -4.97 -0.03 1.10 16 6 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 7 C -0.22 -1.46 11.12 -39.38 -0.44 -1.89 16 8 C -0.06 -0.37 12.30 29.74 0.37 -0.01 16 9 O 0.10 0.98 11.20 17.17 0.19 1.17 16 10 N -0.36 -4.14 12.07 33.42 0.40 -3.74 16 11 C -0.12 -1.02 6.18 -24.76 -0.15 -1.17 16 12 C 0.10 1.08 6.95 -2.04 -0.01 1.06 16 13 N -0.63 -9.35 3.29 -169.66 -0.56 -9.91 16 14 C 0.55 11.03 7.91 -10.99 -0.09 10.94 16 15 O -0.52 -12.47 16.20 5.56 0.09 -12.38 16 16 C -0.15 -3.07 5.08 36.00 0.18 -2.88 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.42 9.50 30.94 0.29 -15.12 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.12 1.44 5.82 -2.98 -0.02 1.43 16 27 H 0.07 0.57 7.62 -51.93 -0.40 0.18 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.35 3.66 7.10 -39.29 -0.28 3.39 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.22 0.27 8.06 -52.49 -0.42 -0.15 16 37 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 38 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.89 7.23 -51.92 -0.38 0.52 16 41 H 0.09 1.72 7.91 -51.92 -0.41 1.31 16 42 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 45 H 0.07 0.98 6.51 -51.93 -0.34 0.65 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -36.48 387.01 -8.38 -44.86 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.79 Total: -0.36 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.39 Total: -5.75 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.08 Total: -46.03 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.28 Total: -11.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.48 -8.38 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671708611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.229 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds