Wall clock time and date at job start Tue Mar 31 2020 23:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 110.28809 * 2 1 4 4 N 1.46901 * 109.46916 * 300.69646 * 3 2 1 5 5 C 1.46905 * 110.99870 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47066 * 180.02562 * 5 4 3 7 7 C 1.41381 * 126.80142 * 94.99787 * 6 5 4 8 8 C 1.35448 * 103.98735 * 179.97438 * 7 6 5 9 9 O 1.34042 * 106.44749 * 0.02562 * 8 7 6 10 10 N 1.20922 * 111.56414 * 359.70291 * 9 8 7 11 11 C 1.54620 * 110.32664 * 122.13049 * 2 1 3 12 12 C 1.55109 * 102.75651 * 97.20919 * 11 2 1 13 13 N 1.48113 * 103.31560 * 37.26647 * 12 11 2 14 14 C 1.34779 * 127.03513 * 140.72559 * 13 12 11 15 15 O 1.21279 * 120.00124 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.99764 * 0.04586 * 14 13 12 17 17 S 1.81001 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00278 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99566 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00516 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99604 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00241 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47335 * 90.00242 * 22 20 18 24 24 H 1.48500 * 109.47484 * 210.00144 * 22 20 18 25 25 H 1.48508 * 109.47388 * 330.00112 * 22 20 18 26 26 C 1.47480 * 105.93502 * 320.76206 * 13 12 11 27 27 H 1.09002 * 109.46962 * 59.30389 * 1 2 3 28 28 H 1.08994 * 109.46891 * 179.29848 * 1 2 3 29 29 H 1.08995 * 109.47444 * 299.30306 * 1 2 3 30 30 H 1.09004 * 109.46889 * 180.70026 * 3 2 1 31 31 H 1.08995 * 109.47384 * 60.69667 * 3 2 1 32 32 H 1.00901 * 111.00067 * 303.95263 * 4 3 2 33 33 H 1.09001 * 109.46798 * 300.00327 * 5 4 3 34 34 H 1.08998 * 109.46961 * 60.00043 * 5 4 3 35 35 H 1.08004 * 128.00714 * 359.97323 * 7 6 5 36 36 H 1.07998 * 126.77671 * 180.02562 * 8 7 6 37 37 H 1.09005 * 110.73647 * 215.48612 * 11 2 1 38 38 H 1.08998 * 110.73840 * 338.81343 * 11 2 1 39 39 H 1.09000 * 110.58832 * 278.82367 * 12 11 2 40 40 H 1.09007 * 110.82261 * 155.81402 * 12 11 2 41 41 H 1.09000 * 109.47498 * 299.99264 * 16 14 13 42 42 H 1.09001 * 109.47349 * 59.99814 * 16 14 13 43 43 H 0.96995 * 120.00069 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.91833 * 266.09278 * 26 13 12 45 45 H 1.09004 * 110.07770 * 144.89591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 7 1.5671 2.1395 -1.1910 5 6 2.0580 3.5237 -1.2250 6 6 1.5320 4.2131 -2.4575 7 6 0.3744 5.0197 -2.5477 8 6 0.3388 5.3969 -3.8482 9 8 1.4048 4.8353 -4.4355 10 7 2.0563 4.1883 -3.6487 11 6 2.0671 -0.7711 1.2278 12 6 2.3641 -2.1779 0.6458 13 7 2.8825 -1.8835 -0.7101 14 6 3.8948 -2.5068 -1.3451 15 8 4.2159 -2.1590 -2.4617 16 6 4.6274 -3.6363 -0.6679 17 16 5.9212 -4.2619 -1.7682 18 6 6.5966 -5.5345 -0.7539 19 1 6.1881 -5.7151 0.2294 20 6 7.6535 -6.3049 -1.2186 21 7 8.1516 -6.0845 -2.4169 22 14 8.3699 -7.6536 -0.1430 23 1 7.6523 -8.9275 -0.4026 24 1 9.8112 -7.8245 -0.4574 25 1 8.2159 -7.2812 1.2864 26 6 2.0651 -0.7682 -1.2228 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0275 -0.0126 29 1 -0.3634 0.5029 0.8961 30 1 3.1504 1.4196 -0.0126 31 1 1.7148 1.9503 0.8961 32 1 1.8199 1.6457 -2.0338 33 1 1.7126 4.0536 -0.3373 34 1 3.1478 3.5223 -1.2462 35 1 -0.3207 5.2759 -1.7617 36 1 -0.4023 6.0258 -4.3189 37 1 2.9796 -0.3091 1.6049 38 1 1.3099 -0.8272 2.0099 39 1 1.4505 -2.7695 0.5881 40 1 3.1174 -2.6928 1.2421 41 1 5.0792 -3.2743 0.2557 42 1 3.9261 -4.4388 -0.4392 43 1 8.8900 -6.6230 -2.7419 44 1 1.2331 -1.1569 -1.8101 45 1 2.6767 -0.1077 -1.8376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671708611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:47 Heat of formation + Delta-G solvation = 5.302385 kcal Electronic energy + Delta-G solvation = -26381.294011 eV Core-core repulsion = 22527.367025 eV Total energy + Delta-G solvation = -3853.926986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.88557 -41.31875 -39.38522 -37.32848 -35.13467 -34.61390 -33.52586 -32.51505 -31.06798 -30.47673 -28.25731 -27.78469 -26.92557 -25.62551 -24.05319 -23.60244 -21.93452 -20.83192 -20.10860 -19.56639 -18.75218 -18.52566 -18.13431 -17.34021 -16.91162 -16.66879 -16.61709 -16.21811 -15.89552 -15.63039 -15.43175 -15.26944 -14.65599 -14.50877 -14.33790 -13.86061 -13.74443 -13.59655 -13.40636 -13.28080 -13.14628 -13.11133 -12.90869 -12.87057 -12.66624 -12.62769 -12.20955 -11.85693 -11.69332 -11.62434 -11.53289 -11.16688 -11.13072 -11.00317 -10.55302 -10.31725 -9.80822 -9.55909 -8.72229 -8.37057 -6.16746 0.64479 1.20420 1.29037 1.41346 1.42628 1.50777 1.54513 2.04697 2.24771 2.50457 2.96987 3.02269 3.20450 3.34373 3.44740 3.58018 3.64353 3.83260 3.84638 4.19411 4.21480 4.24705 4.25795 4.36050 4.38797 4.39479 4.47062 4.56888 4.63802 4.67099 4.72337 4.76078 4.87730 4.89921 4.98520 5.07016 5.19807 5.23713 5.25984 5.32412 5.38856 5.56360 5.83996 6.08456 6.17211 6.38101 7.03545 7.06299 7.37424 8.72422 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.002089 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.799449 B =13401.546735 C =14530.097202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.060 4.060 3 C 0.076 3.924 4 N -0.678 5.678 5 C 0.138 3.862 6 C 0.002 3.998 7 C -0.223 4.223 8 C -0.052 4.052 9 O 0.083 5.917 10 N -0.408 5.408 11 C -0.114 4.114 12 C 0.089 3.911 13 N -0.621 5.621 14 C 0.546 3.454 15 O -0.572 6.572 16 C -0.117 4.117 17 S -0.155 6.155 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.002 2.998 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.256 1.256 26 C 0.111 3.889 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.017 0.983 31 H 0.107 0.893 32 H 0.332 0.668 33 H 0.122 0.878 34 H 0.032 0.968 35 H 0.199 0.801 36 H 0.261 0.739 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.066 0.934 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.265 22.593 10.857 34.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.061 4.061 3 C -0.053 4.053 4 N -0.309 5.309 5 C 0.009 3.991 6 C -0.156 4.156 7 C -0.245 4.245 8 C -0.132 4.132 9 O 0.017 5.983 10 N -0.114 5.114 11 C -0.153 4.153 12 C -0.032 4.032 13 N -0.355 5.355 14 C 0.334 3.666 15 O -0.451 6.451 16 C -0.268 4.268 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.823 3.177 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.180 1.180 26 C -0.012 4.012 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.036 0.964 31 H 0.125 0.875 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.050 0.950 35 H 0.216 0.784 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.139 0.861 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.110 22.621 8.808 32.835 hybrid contribution 0.890 -1.082 1.174 1.828 sum -21.220 21.539 9.982 31.841 Atomic orbital electron populations 1.21693 0.90808 1.01854 1.03345 1.21474 0.97986 0.93324 0.93329 1.22073 0.96123 0.93041 0.94077 1.60646 1.62802 1.01796 1.05689 1.20254 0.96551 0.89209 0.93118 1.23906 0.96240 1.01181 0.94295 1.23072 0.99912 1.02330 0.99178 1.26947 0.92586 1.00082 0.93608 1.84804 1.30745 1.47741 1.34967 1.73925 1.19770 1.14810 1.02938 1.22876 1.02765 0.92832 0.96784 1.22953 1.00288 0.99041 0.80956 1.48794 1.32406 1.35020 1.19300 1.19839 0.79076 0.82615 0.85048 1.90689 1.66817 1.66465 1.21174 1.23277 1.01240 0.99044 1.03226 1.85655 1.38335 1.43380 1.25450 1.23184 1.21513 1.20140 1.04416 0.89756 1.26191 0.95992 1.00184 0.96968 1.70195 1.25259 1.40500 1.18913 0.84907 0.77198 0.77214 0.78364 1.19193 1.20287 1.17994 1.22264 0.93576 0.87893 0.97435 0.92238 0.92518 0.90271 0.96443 0.87517 0.85012 0.86012 0.94982 0.78369 0.72357 0.90666 0.86146 0.88854 0.89361 0.87464 0.87430 0.91959 0.91538 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.05 71.98 0.58 -0.81 16 2 C -0.06 -0.91 0.76 -51.29 -0.04 -0.95 16 3 C 0.08 1.13 4.41 86.30 0.38 1.51 16 4 N -0.68 -11.60 5.74 -517.92 -2.98 -14.58 16 5 C 0.14 2.24 6.27 85.55 0.54 2.78 16 6 C 0.00 0.04 6.84 43.58 0.30 0.34 16 7 C -0.22 -2.58 11.12 22.40 0.25 -2.33 16 8 C -0.05 -0.51 12.30 67.17 0.83 0.31 16 9 O 0.08 1.61 11.20 71.61 0.80 2.41 16 10 N -0.41 -9.95 12.07 -49.55 -0.60 -10.54 16 11 C -0.11 -1.46 6.18 31.87 0.20 -1.26 16 12 C 0.09 1.66 6.95 86.79 0.60 2.26 16 13 N -0.62 -18.22 3.29 -809.06 -2.66 -20.88 16 14 C 0.55 22.44 7.91 87.66 0.69 23.14 16 15 O -0.57 -29.35 16.20 -3.03 -0.05 -29.40 16 16 C -0.12 -4.94 5.08 71.24 0.36 -4.58 16 17 S -0.16 -8.99 20.57 -56.49 -1.16 -10.15 16 18 C -0.54 -31.72 9.50 67.95 0.65 -31.07 16 19 H 0.08 4.53 7.80 -2.91 -0.02 4.50 16 20 C 0.01 0.65 5.49 84.86 0.47 1.12 16 21 N -0.91 -57.15 13.22 21.65 0.29 -56.87 16 22 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 C 0.11 2.78 5.82 86.53 0.50 3.28 16 27 H 0.06 0.84 7.62 -2.39 -0.02 0.82 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.33 7.43 7.10 -89.69 -0.64 6.80 16 33 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.26 -0.22 8.06 -2.91 -0.02 -0.25 16 37 H 0.07 1.03 7.86 -2.38 -0.02 1.01 16 38 H 0.12 0.79 7.85 -2.39 -0.02 0.77 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.61 7.23 -2.38 -0.02 1.59 16 41 H 0.11 4.09 7.91 -2.40 -0.02 4.07 16 42 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.97 16 44 H 0.07 1.66 7.68 -2.38 -0.02 1.64 16 45 H 0.04 1.34 6.51 -2.38 -0.02 1.33 16 Total: -1.00 -85.82 387.01 2.33 -83.49 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.36 Total: 16.66 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 6.30 Total: -6.26 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -5.95 Total: -102.87 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: 0.75 Total: -26.98 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.15 kcal Total: -85.82 2.33 -83.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671708611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.793 kcal (2) G-P(sol) polarization free energy of solvation -85.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds