Wall clock time and date at job start Tue Mar 31 2020 23:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.64079 * 2 1 4 4 N 1.46907 * 109.46597 * 59.30484 * 3 2 1 5 5 C 1.46901 * 110.99525 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47051 * 179.97438 * 5 4 3 7 7 C 1.41383 * 126.80642 * 94.70538 * 6 5 4 8 8 C 1.35449 * 103.98842 * 179.89187 * 7 6 5 9 9 O 1.34039 * 106.44554 * 0.37211 * 8 7 6 10 10 N 1.20924 * 111.56768 * 359.74722 * 9 8 7 11 11 C 1.55164 * 110.72182 * 236.66979 * 2 1 3 12 12 C 1.54913 * 101.57972 * 277.13805 * 11 2 1 13 13 N 1.47426 * 104.82930 * 322.99019 * 12 11 2 14 14 C 1.34773 * 125.64176 * 204.16701 * 13 12 11 15 15 O 1.21291 * 119.99878 * 179.97438 * 14 13 12 16 16 C 1.50703 * 120.00525 * 359.95592 * 14 13 12 17 17 S 1.81004 * 109.47269 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99670 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00597 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99749 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99925 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47218 * 59.99341 * 22 20 18 24 24 H 1.48500 * 109.47413 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46847 * 299.99763 * 22 20 18 26 26 C 1.47019 * 108.70606 * 24.12615 * 13 12 11 27 27 H 1.09002 * 109.47153 * 298.30655 * 1 2 3 28 28 H 1.09001 * 109.46832 * 178.30846 * 1 2 3 29 29 H 1.09004 * 109.47261 * 58.30827 * 1 2 3 30 30 H 1.09002 * 109.47238 * 179.29618 * 3 2 1 31 31 H 1.08993 * 109.47475 * 299.30048 * 3 2 1 32 32 H 1.00896 * 110.99978 * 56.04500 * 4 3 2 33 33 H 1.08999 * 109.47195 * 299.99441 * 5 4 3 34 34 H 1.08996 * 109.47579 * 59.99959 * 5 4 3 35 35 H 1.08003 * 128.00115 * 0.02657 * 7 6 5 36 36 H 1.08001 * 126.77862 * 180.09696 * 8 7 6 37 37 H 1.08997 * 111.00105 * 35.20994 * 11 2 1 38 38 H 1.08995 * 111.00597 * 159.06027 * 11 2 1 39 39 H 1.09002 * 110.36290 * 204.15185 * 12 11 2 40 40 H 1.09000 * 110.36526 * 81.82835 * 12 11 2 41 41 H 1.09001 * 109.46596 * 300.00171 * 16 14 13 42 42 H 1.08997 * 109.47154 * 60.00130 * 16 14 13 43 43 H 0.96994 * 119.99782 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.88563 * 239.52157 * 26 13 12 45 45 H 1.09003 * 110.00902 * 118.43253 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.5802 2.1392 1.1910 5 6 2.0787 3.5206 1.2244 6 6 1.5569 4.2132 2.4570 7 6 2.2163 4.3386 3.7013 8 6 1.3430 5.0370 4.4657 9 8 0.2706 5.2732 3.6972 10 7 0.4073 4.8097 2.5887 11 6 2.0790 -0.7974 -1.2126 12 6 2.0126 -2.2520 -0.6839 13 7 2.3716 -2.1519 0.7425 14 6 2.8863 -3.1449 1.4944 15 8 3.1454 -2.9488 2.6630 16 6 3.1395 -4.4991 0.8835 17 16 3.8272 -5.6079 2.1380 18 6 4.0203 -7.0731 1.1784 19 1 3.7364 -7.0776 0.1364 20 6 4.5363 -8.2218 1.7620 21 7 4.8819 -8.2165 3.0321 22 14 4.7404 -9.7753 0.7450 23 1 5.6584 -9.5064 -0.3909 24 1 5.3078 -10.8526 1.5951 25 1 3.4176 -10.2018 0.2220 26 6 2.0761 -0.7892 1.2085 27 1 -0.3633 0.4873 0.9048 28 1 -0.3633 -1.0272 -0.0303 29 1 -0.3634 0.5399 -0.8745 30 1 3.1590 1.4096 0.0126 31 1 1.7268 1.9491 -0.8961 32 1 1.8300 1.6438 2.0338 33 1 3.1684 3.5133 1.2453 34 1 1.7358 4.0522 0.3368 35 1 3.1916 3.9658 3.9776 36 1 1.4814 5.3396 5.4932 37 1 1.4396 -0.6696 -2.0860 38 1 3.1061 -0.5096 -1.4367 39 1 2.7294 -2.8807 -1.2123 40 1 1.0039 -2.6501 -0.7942 41 1 2.2016 -4.9103 0.5103 42 1 3.8460 -4.3996 0.0594 43 1 5.2429 -9.0192 3.4398 44 1 2.9869 -0.3180 1.5780 45 1 1.3274 -0.8199 2.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671708612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:51 Heat of formation + Delta-G solvation = 28.983593 kcal Electronic energy + Delta-G solvation = -26264.079786 eV Core-core repulsion = 22411.179695 eV Total energy + Delta-G solvation = -3852.900092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.26846 -40.25415 -38.14333 -36.56068 -34.33458 -32.63251 -32.43082 -31.91088 -29.73016 -29.42604 -27.61547 -26.27736 -25.46486 -24.66518 -23.44731 -22.68341 -21.46627 -19.46834 -19.30316 -18.14954 -17.86491 -17.62832 -16.83503 -16.36591 -15.90823 -15.31190 -15.16186 -14.94724 -14.80714 -14.66435 -14.22062 -13.91061 -13.82470 -13.66329 -13.46364 -12.81253 -12.74585 -12.56321 -12.40899 -12.31546 -12.22784 -12.11212 -11.70431 -11.58779 -11.05002 -11.04347 -11.02278 -10.96958 -10.84275 -10.76214 -10.52573 -9.99979 -9.82626 -9.40237 -9.06281 -8.88733 -8.49391 -8.24113 -6.50740 -6.21820 -3.92627 1.16402 1.81885 2.91702 2.92109 3.06952 3.23071 3.25678 3.28914 3.61467 3.63720 3.85665 4.17631 4.20917 4.24168 4.31875 4.57276 4.75730 4.83766 4.86188 4.93747 5.02774 5.05548 5.09545 5.13144 5.21673 5.26144 5.33620 5.35192 5.48326 5.50921 5.60975 5.61772 5.68103 5.74170 5.79315 5.87712 5.91326 5.94873 6.13405 6.19388 6.40400 6.49872 6.88338 7.58815 7.68261 7.93086 8.34704 8.56469 9.23178 10.85577 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.001948 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.967385 B =14371.257032 C =15319.178079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C 0.077 3.923 4 N -0.682 5.682 5 C 0.138 3.862 6 C 0.016 3.984 7 C -0.232 4.232 8 C -0.059 4.059 9 O 0.100 5.900 10 N -0.347 5.347 11 C -0.123 4.123 12 C 0.102 3.898 13 N -0.624 5.624 14 C 0.547 3.453 15 O -0.517 6.517 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.118 3.882 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.347 0.653 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.171 0.829 36 H 0.217 0.783 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.060 0.940 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 26.604 -6.088 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.052 4.052 4 N -0.315 5.315 5 C 0.008 3.992 6 C -0.144 4.144 7 C -0.254 4.254 8 C -0.140 4.140 9 O 0.032 5.968 10 N -0.049 5.049 11 C -0.162 4.162 12 C -0.022 4.022 13 N -0.362 5.362 14 C 0.336 3.664 15 O -0.391 6.391 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.005 4.005 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.189 0.811 36 H 0.233 0.767 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.854 27.092 -5.252 28.693 hybrid contribution 1.630 -1.641 -1.266 2.637 sum -6.225 25.451 -6.518 27.000 Atomic orbital electron populations 1.21693 0.92414 1.01533 1.02805 1.21650 0.97157 0.93414 0.94965 1.21951 0.96970 0.92752 0.93548 1.60409 1.63503 1.01603 1.05951 1.20141 0.96883 0.89065 0.93080 1.23485 0.91622 1.01535 0.97723 1.22815 1.03593 1.05596 0.93364 1.26043 0.87132 1.01054 0.99785 1.84871 1.37531 1.57648 1.16749 1.73875 1.19137 1.12581 0.99324 1.22878 1.01978 0.94089 0.97217 1.22293 1.00961 0.97286 0.81632 1.48472 1.65199 1.11283 1.11231 1.20040 0.75853 0.84674 0.85843 1.90706 1.50308 1.82045 1.16066 1.23505 1.04872 0.95750 1.05545 1.85394 1.81124 1.04687 1.12224 1.22817 1.49643 0.97171 0.98726 0.90983 1.24996 0.94682 0.98660 0.95256 1.70009 1.40120 1.29275 1.10883 0.86221 0.78623 0.81048 0.79589 1.19944 1.20800 1.19920 1.21929 0.99805 0.82477 0.96272 0.91270 0.92760 0.92480 0.94444 0.90131 0.83461 0.92677 0.89161 0.81135 0.76681 0.89568 0.90441 0.90262 0.91264 0.89310 0.89351 0.92125 0.92197 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 8.24 37.16 0.31 -0.79 16 2 C -0.07 -0.60 0.71 -152.67 -0.11 -0.71 16 3 C 0.08 0.56 4.58 -3.82 -0.02 0.54 16 4 N -0.68 -5.50 5.82 -115.05 -0.67 -6.17 16 5 C 0.14 1.01 6.27 -4.97 -0.03 0.98 16 6 C 0.02 0.14 6.84 -82.10 -0.56 -0.42 16 7 C -0.23 -1.56 11.12 -39.38 -0.44 -1.99 16 8 C -0.06 -0.34 12.30 29.74 0.37 0.03 16 9 O 0.10 0.88 11.20 17.18 0.19 1.07 16 10 N -0.35 -3.65 12.07 33.43 0.40 -3.25 16 11 C -0.12 -0.97 6.03 -24.58 -0.15 -1.12 16 12 C 0.10 1.09 6.37 -2.53 -0.02 1.07 16 13 N -0.62 -9.09 3.33 -170.52 -0.57 -9.66 16 14 C 0.55 10.74 7.87 -10.99 -0.09 10.65 16 15 O -0.52 -12.17 16.19 5.55 0.09 -12.08 16 16 C -0.15 -3.03 5.16 36.01 0.19 -2.85 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 C 0.12 1.43 5.14 -3.07 -0.02 1.41 16 27 H 0.07 0.67 7.72 -51.93 -0.40 0.27 16 28 H 0.05 0.50 7.44 -51.93 -0.39 0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.35 2.98 7.77 -39.29 -0.31 2.67 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.22 0.31 8.06 -52.49 -0.42 -0.12 16 37 H 0.09 0.53 8.04 -51.93 -0.42 0.11 16 38 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 39 H 0.08 0.83 7.48 -51.93 -0.39 0.45 16 40 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 41 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.09 1.69 7.85 -51.92 -0.41 1.29 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.06 0.74 7.72 -51.93 -0.40 0.34 16 45 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -36.11 387.57 -8.44 -44.54 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.86 Total: -1.10 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.37 Total: -6.22 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.10 Total: -44.58 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.28 Total: -11.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.11 -8.44 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671708612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.527 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds