Wall clock time and date at job start Tue Mar 31 2020 23:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.64079 * 2 1 4 4 N 1.46907 * 109.46597 * 59.30484 * 3 2 1 5 5 C 1.46901 * 110.99525 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47051 * 179.97438 * 5 4 3 7 7 C 1.41383 * 126.80642 * 94.70538 * 6 5 4 8 8 C 1.35449 * 103.98842 * 179.89187 * 7 6 5 9 9 O 1.34039 * 106.44554 * 0.37211 * 8 7 6 10 10 N 1.20924 * 111.56768 * 359.74722 * 9 8 7 11 11 C 1.55164 * 110.72182 * 236.66979 * 2 1 3 12 12 C 1.54913 * 101.57972 * 277.13805 * 11 2 1 13 13 N 1.47426 * 104.82930 * 322.99019 * 12 11 2 14 14 C 1.34773 * 125.64176 * 204.16701 * 13 12 11 15 15 O 1.21291 * 119.99878 * 179.97438 * 14 13 12 16 16 C 1.50703 * 120.00525 * 359.95592 * 14 13 12 17 17 S 1.81004 * 109.47269 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99670 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00597 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99749 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99925 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47218 * 59.99341 * 22 20 18 24 24 H 1.48500 * 109.47413 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46847 * 299.99763 * 22 20 18 26 26 C 1.47019 * 108.70606 * 24.12615 * 13 12 11 27 27 H 1.09002 * 109.47153 * 298.30655 * 1 2 3 28 28 H 1.09001 * 109.46832 * 178.30846 * 1 2 3 29 29 H 1.09004 * 109.47261 * 58.30827 * 1 2 3 30 30 H 1.09002 * 109.47238 * 179.29618 * 3 2 1 31 31 H 1.08993 * 109.47475 * 299.30048 * 3 2 1 32 32 H 1.00896 * 110.99978 * 56.04500 * 4 3 2 33 33 H 1.08999 * 109.47195 * 299.99441 * 5 4 3 34 34 H 1.08996 * 109.47579 * 59.99959 * 5 4 3 35 35 H 1.08003 * 128.00115 * 0.02657 * 7 6 5 36 36 H 1.08001 * 126.77862 * 180.09696 * 8 7 6 37 37 H 1.08997 * 111.00105 * 35.20994 * 11 2 1 38 38 H 1.08995 * 111.00597 * 159.06027 * 11 2 1 39 39 H 1.09002 * 110.36290 * 204.15185 * 12 11 2 40 40 H 1.09000 * 110.36526 * 81.82835 * 12 11 2 41 41 H 1.09001 * 109.46596 * 300.00171 * 16 14 13 42 42 H 1.08997 * 109.47154 * 60.00130 * 16 14 13 43 43 H 0.96994 * 119.99782 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.88563 * 239.52157 * 26 13 12 45 45 H 1.09003 * 110.00902 * 118.43253 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 7 1.5802 2.1392 1.1910 5 6 2.0787 3.5206 1.2244 6 6 1.5569 4.2132 2.4570 7 6 2.2163 4.3386 3.7013 8 6 1.3430 5.0370 4.4657 9 8 0.2706 5.2732 3.6972 10 7 0.4073 4.8097 2.5887 11 6 2.0790 -0.7974 -1.2126 12 6 2.0126 -2.2520 -0.6839 13 7 2.3716 -2.1519 0.7425 14 6 2.8863 -3.1449 1.4944 15 8 3.1454 -2.9488 2.6630 16 6 3.1395 -4.4991 0.8835 17 16 3.8272 -5.6079 2.1380 18 6 4.0203 -7.0731 1.1784 19 1 3.7364 -7.0776 0.1364 20 6 4.5363 -8.2218 1.7620 21 7 4.8819 -8.2165 3.0321 22 14 4.7404 -9.7753 0.7450 23 1 5.6584 -9.5064 -0.3909 24 1 5.3078 -10.8526 1.5951 25 1 3.4176 -10.2018 0.2220 26 6 2.0761 -0.7892 1.2085 27 1 -0.3633 0.4873 0.9048 28 1 -0.3633 -1.0272 -0.0303 29 1 -0.3634 0.5399 -0.8745 30 1 3.1590 1.4096 0.0126 31 1 1.7268 1.9491 -0.8961 32 1 1.8300 1.6438 2.0338 33 1 3.1684 3.5133 1.2453 34 1 1.7358 4.0522 0.3368 35 1 3.1916 3.9658 3.9776 36 1 1.4814 5.3396 5.4932 37 1 1.4396 -0.6696 -2.0860 38 1 3.1061 -0.5096 -1.4367 39 1 2.7294 -2.8807 -1.2123 40 1 1.0039 -2.6501 -0.7942 41 1 2.2016 -4.9103 0.5103 42 1 3.8460 -4.3996 0.0594 43 1 5.2429 -9.0192 3.4398 44 1 2.9869 -0.3180 1.5780 45 1 1.3274 -0.8199 2.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671708612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:50 Heat of formation + Delta-G solvation = 3.570859 kcal Electronic energy + Delta-G solvation = -26265.181765 eV Core-core repulsion = 22411.179695 eV Total energy + Delta-G solvation = -3854.002071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.86197 -41.33996 -39.35811 -37.33917 -35.12155 -34.59752 -33.49148 -32.51214 -31.03544 -30.48026 -28.24332 -27.78009 -27.09395 -25.50079 -24.02670 -23.50550 -22.02118 -20.80123 -20.16315 -19.53770 -18.69319 -18.49075 -18.09175 -17.43207 -16.89279 -16.77187 -16.56203 -15.92118 -15.81686 -15.65777 -15.44055 -15.18080 -14.67020 -14.51399 -14.43674 -14.07668 -13.83110 -13.62139 -13.43278 -13.20243 -13.12509 -13.07129 -12.87603 -12.83209 -12.73352 -12.64251 -12.17542 -11.84632 -11.67979 -11.66402 -11.58212 -11.13856 -11.12326 -10.98068 -10.54829 -10.30572 -9.72500 -9.46899 -8.69883 -8.35554 -6.14729 0.64298 1.22589 1.26494 1.43625 1.44073 1.53426 1.54619 2.08190 2.26433 2.47745 2.98365 3.04428 3.22439 3.29092 3.45709 3.55660 3.70013 3.85400 3.87372 4.16368 4.21047 4.23562 4.26608 4.34049 4.40709 4.42226 4.43745 4.61877 4.64350 4.71457 4.72567 4.76663 4.85538 4.91370 4.94696 5.09882 5.15074 5.18802 5.21087 5.34331 5.40231 5.49235 5.90469 6.18473 6.23375 6.37125 7.05170 7.08804 7.37506 8.73540 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.001948 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.967385 B =14371.257032 C =15319.178079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 C 0.082 3.918 4 N -0.691 5.691 5 C 0.140 3.860 6 C 0.004 3.996 7 C -0.246 4.246 8 C -0.046 4.046 9 O 0.084 5.916 10 N -0.385 5.385 11 C -0.111 4.111 12 C 0.088 3.912 13 N -0.615 5.615 14 C 0.544 3.456 15 O -0.569 6.569 16 C -0.119 4.119 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.115 3.885 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.341 0.659 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.189 0.811 36 H 0.257 0.743 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.272 0.728 44 H 0.055 0.945 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 27.229 -8.752 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.059 4.059 3 C -0.047 4.047 4 N -0.323 5.323 5 C 0.011 3.989 6 C -0.155 4.155 7 C -0.268 4.268 8 C -0.127 4.127 9 O 0.019 5.981 10 N -0.091 5.091 11 C -0.149 4.149 12 C -0.033 4.033 13 N -0.349 5.349 14 C 0.332 3.668 15 O -0.448 6.448 16 C -0.270 4.270 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.007 4.007 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.206 0.794 36 H 0.273 0.727 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.048 27.769 -7.965 29.989 hybrid contribution 1.626 -1.693 -0.424 2.386 sum -6.422 26.076 -8.389 28.135 Atomic orbital electron populations 1.21642 0.92289 1.01164 1.02865 1.21587 0.97027 0.93793 0.93483 1.21946 0.97216 0.91716 0.93810 1.60415 1.63954 1.01972 1.05993 1.20178 0.97646 0.88441 0.92664 1.23874 0.91517 1.01218 0.98898 1.23137 1.04602 1.06201 0.92846 1.26839 0.85633 0.99401 1.00833 1.84815 1.38695 1.57884 1.16750 1.73865 1.20453 1.14317 1.00447 1.22897 1.03232 0.91332 0.97439 1.22688 1.01731 0.99811 0.79100 1.48438 1.62755 1.11046 1.12699 1.19819 0.76326 0.85219 0.85457 1.90682 1.53043 1.82868 1.18204 1.23297 1.05389 0.94934 1.03355 1.85589 1.82404 1.07416 1.17045 1.23155 1.49775 0.97372 0.99112 0.89860 1.26160 0.93937 1.02609 0.96509 1.70180 1.41118 1.30433 1.13029 0.84986 0.79193 0.75873 0.77837 1.18533 1.20366 1.18624 1.22110 0.99361 0.81490 0.97783 0.92778 0.93419 0.90749 0.93941 0.88498 0.84134 0.91172 0.89133 0.79389 0.72698 0.86595 0.89540 0.89623 0.90052 0.87700 0.87429 0.91955 0.92660 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.24 71.98 0.59 -1.27 16 2 C -0.06 -0.85 0.71 -50.99 -0.04 -0.89 16 3 C 0.08 0.99 4.58 86.30 0.40 1.39 16 4 N -0.69 -10.40 5.82 -517.92 -3.01 -13.41 16 5 C 0.14 1.91 6.27 85.56 0.54 2.45 16 6 C 0.00 0.07 6.84 43.58 0.30 0.37 16 7 C -0.25 -3.06 11.12 22.40 0.25 -2.81 16 8 C -0.05 -0.47 12.30 67.17 0.83 0.36 16 9 O 0.08 1.46 11.20 71.64 0.80 2.27 16 10 N -0.39 -8.17 12.07 -49.54 -0.60 -8.77 16 11 C -0.11 -1.34 6.03 31.99 0.19 -1.14 16 12 C 0.09 1.65 6.37 86.86 0.55 2.20 16 13 N -0.61 -17.33 3.33 -811.78 -2.70 -20.03 16 14 C 0.54 21.52 7.87 87.66 0.69 22.21 16 15 O -0.57 -27.87 16.19 -3.06 -0.05 -27.91 16 16 C -0.12 -4.90 5.16 71.24 0.37 -4.53 16 17 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 18 C -0.55 -31.42 9.50 67.96 0.65 -30.78 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.30 13.22 21.65 0.29 -56.02 16 22 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 C 0.12 2.71 5.14 86.73 0.45 3.16 16 27 H 0.05 1.00 7.72 -2.39 -0.02 0.99 16 28 H 0.05 0.79 7.44 -2.39 -0.02 0.77 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.04 0.49 8.12 -2.39 -0.02 0.48 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.34 5.76 7.77 -89.70 -0.70 5.06 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.26 0.06 8.06 -2.91 -0.02 0.03 16 37 H 0.12 0.83 8.04 -2.39 -0.02 0.81 16 38 H 0.09 0.96 8.05 -2.39 -0.02 0.94 16 39 H 0.09 1.54 7.48 -2.39 -0.02 1.52 16 40 H 0.08 1.38 7.71 -2.39 -0.02 1.37 16 41 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.11 4.00 7.85 -2.40 -0.02 3.98 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.06 1.36 7.72 -2.39 -0.02 1.35 16 45 H 0.05 1.42 7.84 -2.39 -0.02 1.40 16 Total: -1.00 -82.51 387.57 2.12 -80.39 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.30 Total: 15.75 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 6.22 Total: -8.10 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -6.02 Total: -98.23 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.75 Total: -25.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -82.51 2.12 -80.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671708612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.963 kcal (2) G-P(sol) polarization free energy of solvation -82.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds