Wall clock time and date at job start Tue Mar 31 2020 23:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38218 * 120.42151 * 2 1 4 4 N 1.31853 * 120.76781 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72276 * 359.70429 * 4 3 2 6 6 C 1.38187 * 120.76454 * 0.58662 * 5 4 3 7 7 C 1.50693 * 120.41980 * 179.69809 * 6 5 4 8 8 N 1.46900 * 109.47380 * 269.72537 * 7 6 5 9 9 C 1.46905 * 110.99851 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47063 * 324.99524 * 9 8 7 11 11 C 1.52997 * 109.47150 * 85.00128 * 9 8 7 12 12 O 1.42898 * 109.47319 * 64.99949 * 11 9 8 13 13 C 1.53001 * 109.46678 * 205.00125 * 9 8 7 14 14 N 1.46498 * 109.47453 * 55.00226 * 13 9 8 15 15 C 1.34774 * 119.99989 * 180.02562 * 14 13 9 16 16 O 1.21277 * 120.00219 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00230 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47483 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99908 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99829 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00263 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47469 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47065 * 120.00150 * 23 21 19 26 26 H 1.48506 * 109.47448 * 239.99913 * 23 21 19 27 27 C 1.38634 * 120.41608 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46833 * 269.97346 * 1 2 3 29 29 H 1.08998 * 109.46819 * 29.97309 * 1 2 3 30 30 H 1.08995 * 109.47238 * 149.97657 * 1 2 3 31 31 H 1.08001 * 119.61507 * 0.02562 * 3 2 1 32 32 H 1.07998 * 119.62040 * 180.30643 * 5 4 3 33 33 H 1.08999 * 109.47587 * 149.72168 * 7 6 5 34 34 H 1.09007 * 109.46917 * 29.72691 * 7 6 5 35 35 H 1.00898 * 110.99877 * 303.95307 * 8 7 6 36 36 H 1.09002 * 109.47153 * 304.99641 * 11 9 8 37 37 H 1.09001 * 109.46832 * 184.99832 * 11 9 8 38 38 H 0.96701 * 113.99881 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.46781 * 175.00142 * 13 9 8 40 40 H 1.09006 * 109.46980 * 294.99793 * 13 9 8 41 41 H 0.97001 * 119.99817 * 359.97438 * 14 13 9 42 42 H 1.09007 * 109.46900 * 300.00174 * 17 15 14 43 43 H 1.09006 * 109.47045 * 59.99662 * 17 15 14 44 44 H 0.96992 * 120.00237 * 179.97438 * 22 21 19 45 45 H 1.07992 * 120.79098 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 0.0048 6 6 3.5948 -1.1472 -0.0011 7 6 4.4026 -2.4193 -0.0019 8 7 4.6645 -2.8323 -1.3871 9 6 5.4512 -4.0723 -1.4269 10 1 6.1558 -4.0824 -0.5953 11 6 4.5128 -5.2754 -1.3151 12 8 3.6661 -5.3278 -2.4651 13 6 6.2201 -4.1462 -2.7476 14 7 7.0291 -2.9357 -2.9102 15 6 7.7950 -2.7795 -4.0081 16 8 7.8149 -3.6411 -4.8613 17 6 8.6268 -1.5340 -4.1756 18 16 9.5365 -1.6215 -5.7380 19 6 10.3983 -0.0859 -5.6766 20 1 10.2655 0.5746 -4.8325 21 6 11.2471 0.2754 -6.7137 22 7 11.4086 -0.5294 -7.7428 23 14 12.1603 1.9036 -6.6490 24 1 11.8084 2.6192 -5.3963 25 1 13.6235 1.6522 -6.6817 26 1 11.7746 2.7343 -7.8180 27 6 2.2089 -1.1955 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.6675 2.1275 0.0004 32 1 5.3046 0.1284 0.0092 33 1 3.8464 -3.2033 0.5120 34 1 5.3489 -2.2491 0.5117 35 1 3.8034 -2.9340 -1.9030 36 1 3.9014 -5.1773 -0.4180 37 1 5.1013 -6.1909 -1.2553 38 1 3.0432 -6.0674 -2.4615 39 1 6.8714 -5.0202 -2.7405 40 1 5.5146 -4.2255 -3.5748 41 1 7.0129 -2.2463 -2.2280 42 1 7.9753 -0.6601 -4.1825 43 1 9.3326 -1.4545 -3.3486 44 1 12.0015 -0.2767 -8.4677 45 1 1.6888 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676504845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:05 Heat of formation + Delta-G solvation = -58.010647 kcal Electronic energy + Delta-G solvation = -26041.794861 eV Core-core repulsion = 22185.122416 eV Total energy + Delta-G solvation = -3856.672445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64035 -39.29936 -38.20412 -36.04299 -34.35634 -33.92772 -32.51093 -32.35036 -30.05273 -28.72921 -27.67275 -25.84271 -25.54121 -25.09201 -23.32584 -21.47649 -21.09687 -20.09238 -18.05289 -17.70712 -17.29897 -17.02517 -16.44904 -16.14438 -15.87243 -15.27686 -14.92153 -14.80457 -14.73623 -14.56888 -14.30125 -13.80967 -13.69136 -13.51772 -13.40985 -13.17920 -13.04157 -12.88710 -12.86524 -12.51550 -12.46840 -12.12714 -11.75368 -11.53176 -11.40311 -11.01053 -10.93743 -10.69012 -10.49932 -10.01203 -9.73452 -9.71518 -9.24537 -9.16692 -9.00362 -8.79964 -8.61973 -8.13029 -6.40629 -6.14432 -3.83753 0.75977 0.94712 3.15586 3.26728 3.29143 3.33741 3.36173 3.42028 3.67568 3.88802 3.97139 4.18704 4.28002 4.33478 4.40105 4.50847 4.59145 4.62226 4.63807 4.75260 4.89160 4.93962 5.07724 5.12937 5.16527 5.17945 5.20628 5.33315 5.37399 5.45303 5.59585 5.68253 5.80491 5.84849 5.89168 6.02591 6.07947 6.27837 6.38590 6.55045 6.83162 7.01772 7.16406 7.67540 7.71114 7.97403 8.43251 8.82403 9.31070 10.93096 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.002472 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.899488 B =11322.097290 C =13504.681030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.140 4.140 3 C 0.098 3.902 4 N -0.480 5.480 5 C 0.116 3.884 6 C -0.131 4.131 7 C 0.101 3.899 8 N -0.673 5.673 9 C 0.078 3.922 10 H 0.097 0.903 11 C 0.048 3.952 12 O -0.565 6.565 13 C 0.138 3.862 14 N -0.725 5.725 15 C 0.530 3.470 16 O -0.525 6.525 17 C -0.151 4.151 18 S -0.063 6.063 19 C -0.532 4.532 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.071 4.071 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.356 0.644 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.381 0.619 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.402 0.598 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.267 0.733 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.944 -6.163 22.378 32.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.142 4.142 3 C -0.060 4.060 4 N -0.187 5.187 5 C -0.041 4.041 6 C -0.133 4.133 7 C -0.028 4.028 8 N -0.305 5.305 9 C -0.032 4.032 10 H 0.115 0.885 11 C -0.033 4.033 12 O -0.370 6.370 13 C 0.013 3.987 14 N -0.379 5.379 15 C 0.316 3.684 16 O -0.400 6.400 17 C -0.302 4.302 18 S 0.164 5.836 19 C -0.680 4.680 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.504 5.504 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.098 4.098 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.175 0.825 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.176 0.824 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.228 0.772 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.236 0.764 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.481 -5.887 20.548 30.304 hybrid contribution -0.936 0.344 1.810 2.066 sum -22.417 -5.543 22.358 32.143 Atomic orbital electron populations 1.20718 0.90229 1.03261 1.02493 1.20914 0.97571 0.94150 1.01605 1.22710 0.90080 0.97471 0.95697 1.67739 1.08256 1.31308 1.11412 1.22708 1.00503 0.86855 0.94054 1.20740 0.94078 0.96613 1.01855 1.20865 0.98969 0.92461 0.90512 1.60510 1.25930 1.32062 1.12048 1.21995 0.94681 0.87085 0.99457 0.88545 1.22807 0.93118 0.99331 0.88009 1.86512 1.53201 1.53995 1.43303 1.21092 0.93370 0.87936 0.96313 1.45768 1.46518 1.22126 1.23516 1.20258 0.79219 0.88025 0.80902 1.90688 1.64620 1.43362 1.41292 1.23508 1.01803 0.97737 1.07115 1.85370 1.53158 1.27450 1.17638 1.22923 1.30700 1.05130 1.09290 0.90908 1.24993 0.96189 0.97932 0.94577 1.70035 1.36042 1.36060 1.08277 0.86125 0.79136 0.82066 0.78216 1.19594 1.20633 1.20618 1.21358 0.93460 0.98114 0.96857 0.90991 0.91046 0.91356 0.82959 0.82541 0.94273 0.89539 0.82419 0.93529 0.92597 0.77166 0.91696 0.90662 0.76400 0.89288 0.89445 0.92331 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.01 0.36 -0.16 16 2 C -0.14 -1.05 5.90 -104.48 -0.62 -1.67 16 3 C 0.10 0.88 10.86 -17.55 -0.19 0.69 16 4 N -0.48 -5.36 10.36 -13.25 -0.14 -5.50 16 5 C 0.12 1.13 10.86 -17.55 -0.19 0.94 16 6 C -0.13 -1.04 5.41 -104.48 -0.57 -1.60 16 7 C 0.10 0.63 5.64 -4.98 -0.03 0.61 16 8 N -0.67 -5.38 5.68 -107.99 -0.61 -5.99 16 9 C 0.08 0.61 2.57 -67.71 -0.17 0.43 16 10 H 0.10 0.62 7.80 -51.93 -0.41 0.21 16 11 C 0.05 0.28 6.71 37.16 0.25 0.53 16 12 O -0.56 -4.09 12.05 -35.23 -0.42 -4.51 16 13 C 0.14 1.69 5.26 -4.04 -0.02 1.67 16 14 N -0.73 -10.41 5.39 -60.29 -0.32 -10.74 16 15 C 0.53 10.52 7.85 -10.99 -0.09 10.44 16 16 O -0.52 -12.58 15.86 5.56 0.09 -12.49 16 17 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 18 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16 19 C -0.53 -15.61 9.50 30.94 0.29 -15.32 16 20 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.80 13.22 55.49 0.73 -26.07 16 23 Si 0.92 21.98 29.55 -169.99 -5.02 16.95 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C -0.07 -0.52 9.55 -39.27 -0.37 -0.90 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.04 0.20 7.31 -51.93 -0.38 -0.18 16 34 H 0.09 0.49 8.01 -51.92 -0.42 0.07 16 35 H 0.36 3.20 7.93 -39.29 -0.31 2.89 16 36 H 0.05 0.21 7.35 -51.93 -0.38 -0.18 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.38 1.17 9.12 45.56 0.42 1.58 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.11 7.39 -51.93 -0.38 0.72 16 41 H 0.40 4.86 8.14 -40.82 -0.33 4.53 16 42 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -37.95 396.04 -9.12 -47.08 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.96 Total: 4.61 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.22 Total: -5.32 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.34 Total: -48.30 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.34 Total: -17.00 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.95 -9.12 -47.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.935 kcal (2) G-P(sol) polarization free energy of solvation -37.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds