Wall clock time and date at job start Tue Mar 31 2020 23:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38218 * 120.42151 * 2 1 4 4 N 1.31853 * 120.76781 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72276 * 359.70429 * 4 3 2 6 6 C 1.38187 * 120.76454 * 0.58662 * 5 4 3 7 7 C 1.50693 * 120.41980 * 179.69809 * 6 5 4 8 8 N 1.46900 * 109.47380 * 269.72537 * 7 6 5 9 9 C 1.46905 * 110.99851 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47063 * 324.99524 * 9 8 7 11 11 C 1.52997 * 109.47150 * 85.00128 * 9 8 7 12 12 O 1.42898 * 109.47319 * 64.99949 * 11 9 8 13 13 C 1.53001 * 109.46678 * 205.00125 * 9 8 7 14 14 N 1.46498 * 109.47453 * 55.00226 * 13 9 8 15 15 C 1.34774 * 119.99989 * 180.02562 * 14 13 9 16 16 O 1.21277 * 120.00219 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00230 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47483 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99908 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99829 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00263 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47469 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47065 * 120.00150 * 23 21 19 26 26 H 1.48506 * 109.47448 * 239.99913 * 23 21 19 27 27 C 1.38634 * 120.41608 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46833 * 269.97346 * 1 2 3 29 29 H 1.08998 * 109.46819 * 29.97309 * 1 2 3 30 30 H 1.08995 * 109.47238 * 149.97657 * 1 2 3 31 31 H 1.08001 * 119.61507 * 0.02562 * 3 2 1 32 32 H 1.07998 * 119.62040 * 180.30643 * 5 4 3 33 33 H 1.08999 * 109.47587 * 149.72168 * 7 6 5 34 34 H 1.09007 * 109.46917 * 29.72691 * 7 6 5 35 35 H 1.00898 * 110.99877 * 303.95307 * 8 7 6 36 36 H 1.09002 * 109.47153 * 304.99641 * 11 9 8 37 37 H 1.09001 * 109.46832 * 184.99832 * 11 9 8 38 38 H 0.96701 * 113.99881 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.46781 * 175.00142 * 13 9 8 40 40 H 1.09006 * 109.46980 * 294.99793 * 13 9 8 41 41 H 0.97001 * 119.99817 * 359.97438 * 14 13 9 42 42 H 1.09007 * 109.46900 * 300.00174 * 17 15 14 43 43 H 1.09006 * 109.47045 * 59.99662 * 17 15 14 44 44 H 0.96992 * 120.00237 * 179.97438 * 22 21 19 45 45 H 1.07992 * 120.79098 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 0.0048 6 6 3.5948 -1.1472 -0.0011 7 6 4.4026 -2.4193 -0.0019 8 7 4.6645 -2.8323 -1.3871 9 6 5.4512 -4.0723 -1.4269 10 1 6.1558 -4.0824 -0.5953 11 6 4.5128 -5.2754 -1.3151 12 8 3.6661 -5.3278 -2.4651 13 6 6.2201 -4.1462 -2.7476 14 7 7.0291 -2.9357 -2.9102 15 6 7.7950 -2.7795 -4.0081 16 8 7.8149 -3.6411 -4.8613 17 6 8.6268 -1.5340 -4.1756 18 16 9.5365 -1.6215 -5.7380 19 6 10.3983 -0.0859 -5.6766 20 1 10.2655 0.5746 -4.8325 21 6 11.2471 0.2754 -6.7137 22 7 11.4086 -0.5294 -7.7428 23 14 12.1603 1.9036 -6.6490 24 1 11.8084 2.6192 -5.3963 25 1 13.6235 1.6522 -6.6817 26 1 11.7746 2.7343 -7.8180 27 6 2.2089 -1.1955 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.6675 2.1275 0.0004 32 1 5.3046 0.1284 0.0092 33 1 3.8464 -3.2033 0.5120 34 1 5.3489 -2.2491 0.5117 35 1 3.8034 -2.9340 -1.9030 36 1 3.9014 -5.1773 -0.4180 37 1 5.1013 -6.1909 -1.2553 38 1 3.0432 -6.0674 -2.4615 39 1 6.8714 -5.0202 -2.7405 40 1 5.5146 -4.2255 -3.5748 41 1 7.0129 -2.2463 -2.2280 42 1 7.9753 -0.6601 -4.1825 43 1 9.3326 -1.4545 -3.3486 44 1 12.0015 -0.2767 -8.4677 45 1 1.6888 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676504845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:04 Heat of formation + Delta-G solvation = -89.335426 kcal Electronic energy + Delta-G solvation = -26043.153206 eV Core-core repulsion = 22185.122416 eV Total energy + Delta-G solvation = -3858.030789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24290 -40.59691 -39.06736 -36.61013 -35.47699 -34.57612 -34.47732 -33.35850 -31.28809 -29.77306 -28.15462 -27.69280 -26.41119 -26.09318 -23.93184 -22.03756 -21.82502 -21.56573 -19.79359 -18.54780 -17.88904 -17.72853 -17.62150 -17.39160 -16.87563 -16.68243 -16.28588 -16.14846 -15.60348 -15.54009 -15.12006 -14.90964 -14.66516 -14.47835 -14.28094 -14.16181 -13.96329 -13.68548 -13.58319 -13.49384 -13.26640 -13.14891 -12.99686 -12.89864 -12.69300 -12.54791 -12.27055 -12.09446 -11.69901 -11.14993 -10.98601 -10.86512 -10.59839 -10.36958 -10.26012 -9.97744 -9.75138 -9.35557 -8.65324 -8.33887 -6.11656 0.15485 0.35756 1.28790 1.41695 1.48212 1.60131 1.69256 2.27687 2.39025 2.75435 2.99922 3.17261 3.35399 3.47706 3.62750 3.82575 3.85111 3.87910 3.99738 4.07865 4.09069 4.15468 4.28167 4.31400 4.40088 4.45629 4.53191 4.59516 4.66377 4.72047 4.80764 4.81672 4.85450 4.95045 5.03265 5.20681 5.30410 5.33882 5.42886 5.54564 5.81890 6.00894 6.21123 6.36588 6.63970 6.90355 7.07296 7.07497 7.35228 8.75736 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.002472 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.899488 B =11322.097290 C =13504.681030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.077 3.923 4 N -0.516 5.516 5 C 0.092 3.908 6 C -0.129 4.129 7 C 0.107 3.893 8 N -0.685 5.685 9 C 0.087 3.913 10 H 0.119 0.881 11 C 0.051 3.949 12 O -0.589 6.589 13 C 0.137 3.863 14 N -0.697 5.697 15 C 0.530 3.470 16 O -0.573 6.573 17 C -0.127 4.127 18 S -0.152 6.152 19 C -0.544 4.544 20 H 0.081 0.919 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.076 4.076 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.350 0.650 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.416 0.584 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.271 0.729 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.123 -5.892 24.948 35.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.080 4.080 4 N -0.224 5.224 5 C -0.065 4.065 6 C -0.131 4.131 7 C -0.021 4.021 8 N -0.317 5.317 9 C -0.023 4.023 10 H 0.136 0.864 11 C -0.029 4.029 12 O -0.398 6.398 13 C 0.012 3.988 14 N -0.350 5.350 15 C 0.315 3.685 16 O -0.452 6.452 17 C -0.278 4.278 18 S 0.075 5.925 19 C -0.692 4.692 20 H 0.099 0.901 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.102 4.102 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.182 0.818 32 H 0.176 0.824 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.169 0.831 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.248 0.752 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.253 0.747 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.700 -5.623 23.184 32.931 hybrid contribution -0.701 0.206 1.084 1.307 sum -23.401 -5.416 24.268 34.145 Atomic orbital electron populations 1.20769 0.88257 1.03984 1.03456 1.21229 0.99027 0.93721 1.00259 1.23031 0.89766 0.98868 0.96368 1.67673 1.09505 1.32504 1.12724 1.22888 1.00847 0.87482 0.95303 1.20892 0.94629 0.96589 1.00991 1.20880 0.99558 0.92069 0.89610 1.60428 1.25809 1.32260 1.13225 1.21931 0.95084 0.88172 0.97124 0.86356 1.22808 0.93063 0.98493 0.88516 1.86473 1.53936 1.55217 1.44161 1.21235 0.92739 0.86470 0.98310 1.45548 1.44600 1.23109 1.21739 1.20043 0.79693 0.86969 0.81780 1.90674 1.66468 1.44722 1.43359 1.23347 1.01803 0.99268 1.03398 1.85540 1.55022 1.28533 1.23376 1.23230 1.31015 1.05113 1.09875 0.90084 1.26145 0.96996 1.02236 0.93889 1.70193 1.36963 1.38444 1.09214 0.84892 0.77601 0.76557 0.78804 1.18127 1.19726 1.19931 1.21699 0.93401 0.99035 0.96105 0.89784 0.90548 0.90431 0.81800 0.82366 0.92109 0.88609 0.83066 0.91002 0.91869 0.75235 0.92109 0.93206 0.74678 0.87919 0.87297 0.91993 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.04 71.24 0.72 -0.07 16 2 C -0.14 -1.89 5.90 -19.77 -0.12 -2.00 16 3 C 0.08 1.35 10.86 84.68 0.92 2.27 16 4 N -0.52 -11.57 10.36 -195.85 -2.03 -13.60 16 5 C 0.09 1.74 10.86 84.67 0.92 2.66 16 6 C -0.13 -1.81 5.41 -19.77 -0.11 -1.92 16 7 C 0.11 1.02 5.64 85.55 0.48 1.50 16 8 N -0.69 -9.26 5.68 -495.57 -2.82 -12.08 16 9 C 0.09 1.12 2.57 44.91 0.12 1.23 16 10 H 0.12 1.05 7.80 -2.39 -0.02 1.03 16 11 C 0.05 0.45 6.71 71.98 0.48 0.94 16 12 O -0.59 -7.42 12.05 -148.98 -1.80 -9.21 16 13 C 0.14 3.21 5.26 86.38 0.45 3.66 16 14 N -0.70 -19.20 5.39 -463.06 -2.50 -21.69 16 15 C 0.53 21.04 7.85 87.66 0.69 21.73 16 16 O -0.57 -28.26 15.86 -3.02 -0.05 -28.31 16 17 C -0.13 -5.39 6.16 71.24 0.44 -4.95 16 18 S -0.15 -8.79 20.57 -56.49 -1.16 -9.96 16 19 C -0.54 -32.19 9.50 67.95 0.65 -31.54 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -57.35 13.22 21.65 0.29 -57.07 16 23 Si 1.00 44.94 29.55 68.60 2.03 46.96 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 C -0.08 -0.94 9.55 22.47 0.21 -0.73 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.08 0.44 8.09 -2.39 -0.02 0.42 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.06 0.35 7.31 -2.39 -0.02 0.33 16 34 H 0.10 0.76 8.01 -2.38 -0.02 0.74 16 35 H 0.35 5.56 7.93 -89.70 -0.71 4.84 16 36 H 0.07 0.32 7.35 -2.39 -0.02 0.30 16 37 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.40 1.66 9.12 -74.06 -0.68 0.99 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.46 7.39 -2.38 -0.02 1.45 16 41 H 0.42 9.17 8.14 -92.71 -0.75 8.42 16 42 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 43 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -85.79 396.04 -2.82 -88.61 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -1.11 Total: 22.40 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.32 Total: -6.06 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -7.05 Total: -104.43 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.84 Total: -37.52 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.96 kcal Total: -85.79 -2.82 -88.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.726 kcal (2) G-P(sol) polarization free energy of solvation -85.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds