Wall clock time and date at job start Tue Mar 31 2020 23:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38227 * 120.42030 * 2 1 4 4 N 1.31852 * 120.76104 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72696 * 359.71230 * 4 3 2 6 6 C 1.38181 * 120.76036 * 0.57779 * 5 4 3 7 7 C 1.50706 * 120.41248 * 179.70796 * 6 5 4 8 8 N 1.46903 * 109.46788 * 269.72427 * 7 6 5 9 9 C 1.46906 * 110.99854 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46962 * 34.99320 * 9 8 7 11 11 C 1.53003 * 109.46590 * 275.00026 * 9 8 7 12 12 O 1.42902 * 109.46730 * 294.99662 * 11 9 8 13 13 C 1.52996 * 109.47076 * 154.99879 * 9 8 7 14 14 N 1.46498 * 109.47059 * 304.99500 * 13 9 8 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 9 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 C 1.38624 * 120.41664 * 180.02562 * 2 1 3 28 28 H 1.08989 * 109.47341 * 269.97778 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.97771 * 1 2 3 30 30 H 1.09000 * 109.46960 * 149.97385 * 1 2 3 31 31 H 1.07995 * 119.61596 * 0.04576 * 3 2 1 32 32 H 1.07994 * 119.61702 * 180.30838 * 5 4 3 33 33 H 1.09001 * 109.46709 * 149.72640 * 7 6 5 34 34 H 1.08999 * 109.47422 * 29.72140 * 7 6 5 35 35 H 1.00899 * 111.00052 * 56.04667 * 8 7 6 36 36 H 1.08992 * 109.47566 * 54.99992 * 11 9 8 37 37 H 1.08998 * 109.46886 * 175.00249 * 11 9 8 38 38 H 0.96705 * 113.99732 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.47066 * 184.99767 * 13 9 8 40 40 H 1.08994 * 109.46974 * 64.99915 * 13 9 8 41 41 H 0.97001 * 120.00384 * 0.02562 * 14 13 9 42 42 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 43 43 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 44 44 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 45 45 H 1.08008 * 120.79297 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1920 0.0000 4 7 3.5255 1.1998 -0.0005 5 6 4.2257 0.0822 0.0046 6 6 3.5947 -1.1471 -0.0013 7 6 4.4026 -2.4194 -0.0020 8 7 4.6645 -2.8322 -1.3872 9 6 5.4513 -4.0722 -1.4272 10 1 5.1605 -4.7140 -0.5955 11 6 6.9396 -3.7356 -1.3154 12 8 7.3474 -2.9919 -2.4655 13 6 5.1905 -4.7993 -2.7479 14 7 3.7507 -5.0156 -2.9102 15 6 3.2826 -5.6375 -4.0104 16 8 4.0536 -6.0227 -4.8637 17 6 1.8010 -5.8545 -4.1805 18 16 1.4921 -6.7095 -5.7457 19 6 -0.2648 -6.8299 -5.6869 20 1 -0.8057 -6.4291 -4.8424 21 6 -0.9538 -7.4389 -6.7266 22 7 -0.2947 -7.9270 -7.7562 23 14 -2.8164 -7.5672 -6.6640 24 1 -3.4041 -6.2053 -6.5934 25 1 -3.3065 -8.2556 -7.8852 26 1 -3.2191 -8.3431 -5.4636 27 6 2.2089 -1.1954 -0.0005 28 1 -0.3633 -0.0004 1.0275 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6676 2.1276 0.0007 32 1 5.3046 0.1284 0.0091 33 1 3.8462 -3.2033 0.5118 34 1 5.3489 -2.2492 0.5115 35 1 5.1226 -2.0962 -1.9035 36 1 7.1112 -3.1407 -0.4184 37 1 7.5172 -4.6580 -1.2557 38 1 8.2821 -2.7440 -2.4625 39 1 5.7038 -5.7609 -2.7408 40 1 5.5627 -4.1949 -3.5750 41 1 3.1339 -4.7073 -2.2280 42 1 1.4255 -6.4602 -3.3557 43 1 1.2909 -4.8912 -4.1854 44 1 -0.7762 -8.3529 -8.4825 45 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676504846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:09 Heat of formation + Delta-G solvation = -58.510693 kcal Electronic energy + Delta-G solvation = -26125.563914 eV Core-core repulsion = 22268.869785 eV Total energy + Delta-G solvation = -3856.694129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63393 -39.30500 -38.20181 -36.02445 -34.36195 -33.88042 -32.51364 -32.37616 -30.06386 -28.73661 -27.62100 -25.83275 -25.54205 -25.08030 -23.38089 -21.37241 -21.13093 -20.11188 -18.03720 -17.72548 -17.29655 -17.00035 -16.45743 -16.16206 -15.86358 -15.27718 -14.92438 -14.80401 -14.76181 -14.55056 -14.27607 -13.81515 -13.71500 -13.56914 -13.31756 -13.11956 -13.01793 -12.88857 -12.74009 -12.53471 -12.38201 -12.06574 -11.90462 -11.53723 -11.40402 -11.00451 -10.99439 -10.73046 -10.48328 -9.93230 -9.76954 -9.72770 -9.26948 -9.19503 -9.01510 -8.79169 -8.63527 -8.16403 -6.43317 -6.16654 -3.86380 0.74740 0.98978 3.12987 3.25815 3.27242 3.30598 3.34054 3.39032 3.67927 3.87453 3.99371 4.13216 4.25505 4.36454 4.42734 4.52391 4.64307 4.66553 4.67475 4.81033 4.90835 4.97034 5.06351 5.15927 5.18086 5.18967 5.25969 5.34819 5.38543 5.48314 5.67178 5.69286 5.78825 5.89190 5.97472 5.99362 6.07351 6.23695 6.38439 6.55391 6.81786 7.02129 7.19068 7.63836 7.66188 7.95295 8.39866 8.80368 9.28300 10.90769 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009211 B = 0.002690 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.051889 B =10408.095346 C =13042.275834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.136 4.136 3 C 0.096 3.904 4 N -0.483 5.483 5 C 0.096 3.904 6 C -0.130 4.130 7 C 0.101 3.899 8 N -0.674 5.674 9 C 0.078 3.922 10 H 0.096 0.904 11 C 0.047 3.953 12 O -0.565 6.565 13 C 0.138 3.862 14 N -0.725 5.725 15 C 0.530 3.470 16 O -0.524 6.524 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.054 4.054 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.357 0.643 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.382 0.618 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.401 0.599 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.882 15.224 22.353 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.138 4.138 3 C -0.062 4.062 4 N -0.190 5.190 5 C -0.061 4.061 6 C -0.132 4.132 7 C -0.028 4.028 8 N -0.306 5.306 9 C -0.032 4.032 10 H 0.114 0.886 11 C -0.033 4.033 12 O -0.370 6.370 13 C 0.013 3.987 14 N -0.379 5.379 15 C 0.315 3.685 16 O -0.399 6.399 17 C -0.302 4.302 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.081 4.081 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.177 0.823 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.229 0.771 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.235 0.765 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.388 14.884 20.513 27.785 hybrid contribution -1.292 0.131 1.826 2.241 sum 10.095 15.015 22.340 28.748 Atomic orbital electron populations 1.20752 0.90002 1.03621 1.02597 1.20993 0.97812 0.94116 1.00843 1.22680 0.89912 0.97577 0.96008 1.67667 1.08426 1.31115 1.11778 1.22591 1.00011 0.87352 0.96174 1.20728 0.94723 0.95953 1.01809 1.20864 0.97541 0.93887 0.90520 1.60502 1.51240 1.06857 1.12050 1.21989 0.89435 0.92392 0.99379 0.88617 1.22805 0.96702 0.95687 0.88093 1.86511 1.31547 1.75688 1.43269 1.21097 0.82343 0.98911 0.96377 1.45766 1.07608 1.61205 1.23329 1.20256 0.90444 0.76837 0.80926 1.90693 1.58550 1.49292 1.41344 1.23505 0.94292 1.05214 1.07151 1.85386 1.07504 1.73250 1.17316 1.22837 0.91725 1.44580 1.09162 0.91049 1.24988 0.99347 0.94717 0.94555 1.70013 1.36060 1.36137 1.08152 0.86237 0.83240 0.78439 0.77648 1.19954 1.20849 1.19982 1.21418 0.93289 0.98400 0.94955 0.90896 0.91066 0.90869 0.82946 0.83368 0.89767 0.94067 0.82311 0.93439 0.92627 0.77107 0.91689 0.90619 0.76477 0.89499 0.89365 0.92185 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.04 36.01 0.36 -0.34 16 2 C -0.14 -1.12 5.90 -104.48 -0.62 -1.74 16 3 C 0.10 0.86 10.86 -17.55 -0.19 0.67 16 4 N -0.48 -5.02 10.36 -13.26 -0.14 -5.16 16 5 C 0.10 0.85 10.86 -17.55 -0.19 0.66 16 6 C -0.13 -1.04 5.41 -104.48 -0.57 -1.60 16 7 C 0.10 0.64 5.64 -4.97 -0.03 0.61 16 8 N -0.67 -5.40 5.68 -107.98 -0.61 -6.01 16 9 C 0.08 0.61 2.57 -67.71 -0.17 0.44 16 10 H 0.10 0.61 7.80 -51.93 -0.40 0.21 16 11 C 0.05 0.29 6.72 37.16 0.25 0.54 16 12 O -0.56 -4.20 12.05 -35.23 -0.42 -4.63 16 13 C 0.14 1.68 5.26 -4.04 -0.02 1.66 16 14 N -0.72 -10.27 5.39 -60.30 -0.32 -10.59 16 15 C 0.53 10.39 7.85 -10.98 -0.09 10.30 16 16 O -0.52 -12.47 15.86 5.55 0.09 -12.38 16 17 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 23 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.05 -0.45 9.54 -39.28 -0.37 -0.83 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.08 0.48 8.01 -51.93 -0.42 0.06 16 34 H 0.04 0.21 7.31 -51.93 -0.38 -0.17 16 35 H 0.36 3.27 7.93 -39.29 -0.31 2.96 16 36 H 0.05 0.22 7.35 -51.93 -0.38 -0.17 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.38 1.27 9.12 45.56 0.42 1.68 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.11 7.39 -51.93 -0.38 0.73 16 41 H 0.40 4.74 8.14 -40.82 -0.33 4.41 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -37.39 396.05 -9.12 -46.52 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.96 Total: 5.19 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.22 Total: -5.76 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.34 Total: -47.59 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.34 Total: -17.01 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.39 -9.12 -46.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.994 kcal (2) G-P(sol) polarization free energy of solvation -37.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds