Wall clock time and date at job start Tue Mar 31 2020 23:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38227 * 120.42030 * 2 1 4 4 N 1.31852 * 120.76104 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72696 * 359.71230 * 4 3 2 6 6 C 1.38181 * 120.76036 * 0.57779 * 5 4 3 7 7 C 1.50706 * 120.41248 * 179.70796 * 6 5 4 8 8 N 1.46903 * 109.46788 * 269.72427 * 7 6 5 9 9 C 1.46906 * 110.99854 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46962 * 34.99320 * 9 8 7 11 11 C 1.53003 * 109.46590 * 275.00026 * 9 8 7 12 12 O 1.42902 * 109.46730 * 294.99662 * 11 9 8 13 13 C 1.52996 * 109.47076 * 154.99879 * 9 8 7 14 14 N 1.46498 * 109.47059 * 304.99500 * 13 9 8 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 9 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 C 1.38624 * 120.41664 * 180.02562 * 2 1 3 28 28 H 1.08989 * 109.47341 * 269.97778 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.97771 * 1 2 3 30 30 H 1.09000 * 109.46960 * 149.97385 * 1 2 3 31 31 H 1.07995 * 119.61596 * 0.04576 * 3 2 1 32 32 H 1.07994 * 119.61702 * 180.30838 * 5 4 3 33 33 H 1.09001 * 109.46709 * 149.72640 * 7 6 5 34 34 H 1.08999 * 109.47422 * 29.72140 * 7 6 5 35 35 H 1.00899 * 111.00052 * 56.04667 * 8 7 6 36 36 H 1.08992 * 109.47566 * 54.99992 * 11 9 8 37 37 H 1.08998 * 109.46886 * 175.00249 * 11 9 8 38 38 H 0.96705 * 113.99732 * 180.02562 * 12 11 9 39 39 H 1.09004 * 109.47066 * 184.99767 * 13 9 8 40 40 H 1.08994 * 109.46974 * 64.99915 * 13 9 8 41 41 H 0.97001 * 120.00384 * 0.02562 * 14 13 9 42 42 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 43 43 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 44 44 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 45 45 H 1.08008 * 120.79297 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1920 0.0000 4 7 3.5255 1.1998 -0.0005 5 6 4.2257 0.0822 0.0046 6 6 3.5947 -1.1471 -0.0013 7 6 4.4026 -2.4194 -0.0020 8 7 4.6645 -2.8322 -1.3872 9 6 5.4513 -4.0722 -1.4272 10 1 5.1605 -4.7140 -0.5955 11 6 6.9396 -3.7356 -1.3154 12 8 7.3474 -2.9919 -2.4655 13 6 5.1905 -4.7993 -2.7479 14 7 3.7507 -5.0156 -2.9102 15 6 3.2826 -5.6375 -4.0104 16 8 4.0536 -6.0227 -4.8637 17 6 1.8010 -5.8545 -4.1805 18 16 1.4921 -6.7095 -5.7457 19 6 -0.2648 -6.8299 -5.6869 20 1 -0.8057 -6.4291 -4.8424 21 6 -0.9538 -7.4389 -6.7266 22 7 -0.2947 -7.9270 -7.7562 23 14 -2.8164 -7.5672 -6.6640 24 1 -3.4041 -6.2053 -6.5934 25 1 -3.3065 -8.2556 -7.8852 26 1 -3.2191 -8.3431 -5.4636 27 6 2.2089 -1.1954 -0.0005 28 1 -0.3633 -0.0004 1.0275 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6676 2.1276 0.0007 32 1 5.3046 0.1284 0.0091 33 1 3.8462 -3.2033 0.5118 34 1 5.3489 -2.2492 0.5115 35 1 5.1226 -2.0962 -1.9035 36 1 7.1112 -3.1407 -0.4184 37 1 7.5172 -4.6580 -1.2557 38 1 8.2821 -2.7440 -2.4625 39 1 5.7038 -5.7609 -2.7408 40 1 5.5627 -4.1949 -3.5750 41 1 3.1339 -4.7073 -2.2280 42 1 1.4255 -6.4602 -3.3557 43 1 1.2909 -4.8912 -4.1854 44 1 -0.7762 -8.3529 -8.4825 45 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676504846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:08 Heat of formation + Delta-G solvation = -89.186583 kcal Electronic energy + Delta-G solvation = -26126.894121 eV Core-core repulsion = 22268.869785 eV Total energy + Delta-G solvation = -3858.024335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24303 -40.59244 -39.06202 -36.60652 -35.47304 -34.56698 -34.46905 -33.35869 -31.28856 -29.77188 -28.16171 -27.68166 -26.41211 -26.05712 -23.98936 -21.94994 -21.87079 -21.56388 -19.78536 -18.54585 -17.88939 -17.72807 -17.58744 -17.40556 -16.86358 -16.68039 -16.29456 -16.13973 -15.60056 -15.54687 -15.11939 -14.91413 -14.65809 -14.47423 -14.27735 -14.22375 -13.91616 -13.71284 -13.55792 -13.45557 -13.22739 -13.15079 -12.94313 -12.84360 -12.66655 -12.55022 -12.36405 -12.14821 -11.72503 -11.11219 -10.98612 -10.86245 -10.55099 -10.36244 -10.25432 -9.97685 -9.78916 -9.35748 -8.64803 -8.32646 -6.10859 0.14148 0.36749 1.29153 1.45222 1.48778 1.58915 1.69922 2.28920 2.39199 2.74957 3.01112 3.17083 3.36329 3.48169 3.58662 3.82202 3.84949 3.89600 4.00042 4.09966 4.10558 4.16145 4.30004 4.32845 4.39482 4.47290 4.53292 4.54593 4.63357 4.74315 4.78998 4.82588 4.87133 4.94451 5.03316 5.21901 5.31249 5.39430 5.42932 5.54624 5.80759 6.00761 6.21366 6.34906 6.64766 6.90133 7.03509 7.08118 7.36049 8.76485 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009211 B = 0.002690 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.051889 B =10408.095346 C =13042.275834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.142 4.142 3 C 0.079 3.921 4 N -0.511 5.511 5 C 0.083 3.917 6 C -0.129 4.129 7 C 0.107 3.893 8 N -0.685 5.685 9 C 0.088 3.912 10 H 0.119 0.881 11 C 0.050 3.950 12 O -0.590 6.590 13 C 0.137 3.863 14 N -0.696 5.696 15 C 0.529 3.471 16 O -0.573 6.573 17 C -0.126 4.126 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.261 1.261 27 C -0.067 4.067 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.349 0.651 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.416 0.584 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.271 0.729 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.938 15.728 25.028 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 C -0.078 4.078 4 N -0.219 5.219 5 C -0.074 4.074 6 C -0.131 4.131 7 C -0.021 4.021 8 N -0.316 5.316 9 C -0.023 4.023 10 H 0.137 0.863 11 C -0.030 4.030 12 O -0.398 6.398 13 C 0.013 3.987 14 N -0.349 5.349 15 C 0.314 3.686 16 O -0.453 6.453 17 C -0.277 4.277 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.094 4.094 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.184 0.816 32 H 0.180 0.820 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.248 0.752 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.253 0.747 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.461 15.422 23.259 29.803 hybrid contribution -0.901 0.052 1.070 1.400 sum 9.560 15.473 24.329 30.376 Atomic orbital electron populations 1.20777 0.88712 1.03839 1.03413 1.21238 0.98856 0.93975 1.00290 1.22988 0.89828 0.98629 0.96364 1.67653 1.09247 1.32212 1.12786 1.22901 1.00795 0.87444 0.96273 1.20893 0.94824 0.96377 1.01015 1.20887 0.98304 0.93333 0.89620 1.60437 1.51336 1.06696 1.13181 1.21928 0.90945 0.92238 0.97154 0.86287 1.22824 0.95253 0.96409 0.88516 1.86473 1.33202 1.75982 1.44182 1.21221 0.80346 0.98915 0.98261 1.45533 1.09071 1.58736 1.21595 1.20078 0.89532 0.77207 0.81764 1.90680 1.59315 1.51827 1.43449 1.23339 0.95824 1.05210 1.03350 1.85587 1.08743 1.75129 1.23188 1.23177 0.91626 1.44802 1.09802 0.89904 1.26154 1.05311 0.93915 0.93857 1.70186 1.38474 1.37118 1.09107 0.84993 0.75763 0.79044 0.78123 1.18646 1.20432 1.18508 1.21699 0.93730 0.98921 0.95013 0.89725 0.90460 0.91003 0.81639 0.81984 0.88492 0.92222 0.83129 0.91053 0.91844 0.75242 0.92120 0.93288 0.74653 0.87238 0.87742 0.92015 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.04 71.24 0.72 -0.49 16 2 C -0.14 -2.17 5.90 -19.77 -0.12 -2.29 16 3 C 0.08 1.36 10.86 84.69 0.92 2.28 16 4 N -0.51 -10.35 10.36 -195.85 -2.03 -12.38 16 5 C 0.08 1.36 10.86 84.67 0.92 2.28 16 6 C -0.13 -1.80 5.41 -19.77 -0.11 -1.91 16 7 C 0.11 1.01 5.64 85.56 0.48 1.49 16 8 N -0.68 -9.24 5.68 -495.54 -2.81 -12.06 16 9 C 0.09 1.13 2.57 44.91 0.12 1.24 16 10 H 0.12 1.03 7.80 -2.39 -0.02 1.01 16 11 C 0.05 0.47 6.72 71.98 0.48 0.95 16 12 O -0.59 -7.93 12.05 -148.98 -1.80 -9.73 16 13 C 0.14 3.19 5.26 86.38 0.45 3.64 16 14 N -0.70 -18.64 5.39 -463.07 -2.50 -21.13 16 15 C 0.53 20.57 7.85 87.66 0.69 21.26 16 16 O -0.57 -28.00 15.86 -3.04 -0.05 -28.05 16 17 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 18 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 19 C -0.55 -31.68 9.50 67.96 0.65 -31.03 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.87 13.22 21.65 0.29 -56.58 16 23 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 27 C -0.07 -1.00 9.54 22.46 0.21 -0.78 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.07 0.80 8.10 -2.39 -0.02 0.79 16 31 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 32 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.10 0.71 8.01 -2.39 -0.02 0.69 16 34 H 0.06 0.38 7.31 -2.39 -0.02 0.36 16 35 H 0.35 5.78 7.93 -89.70 -0.71 5.06 16 36 H 0.07 0.37 7.35 -2.39 -0.02 0.35 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.40 2.08 9.12 -74.05 -0.68 1.40 16 39 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.05 1.44 7.39 -2.39 -0.02 1.43 16 41 H 0.42 8.69 8.14 -92.71 -0.75 7.93 16 42 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 43 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.27 15.68 8.31 -92.72 -0.77 14.91 16 45 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -84.08 396.05 -2.82 -86.90 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -1.11 Total: 23.95 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 6.32 Total: -6.93 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -7.05 Total: -102.15 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.84 Total: -37.78 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -84.08 -2.82 -86.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.283 kcal (2) G-P(sol) polarization free energy of solvation -84.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds