Wall clock time and date at job start Tue Mar 31 2020 23:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 125.56667 * 2 1 4 4 C 1.39831 * 107.86830 * 180.02562 * 3 2 1 5 5 C 1.37868 * 107.08335 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.22952 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00057 * 174.88756 * 6 5 4 8 8 N 1.34773 * 120.00254 * 354.88844 * 6 5 4 9 9 C 1.46500 * 120.00119 * 175.47677 * 8 6 5 10 10 C 1.53002 * 109.47182 * 179.97438 * 9 8 6 11 11 N 1.46501 * 109.46948 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00123 * 269.99671 * 11 10 9 13 13 C 1.34778 * 119.99830 * 90.00112 * 11 10 9 14 14 O 1.21281 * 120.00281 * 359.97438 * 13 11 10 15 15 C 1.50702 * 119.99959 * 179.97438 * 13 11 10 16 16 S 1.80997 * 109.46975 * 180.02562 * 15 13 11 17 17 C 1.76199 * 99.99865 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00294 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00183 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00084 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47312 * 59.99453 * 21 19 17 23 23 H 1.48498 * 109.47401 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46834 * 300.00036 * 21 19 17 25 25 N 1.35537 * 125.56636 * 180.30367 * 2 1 3 26 26 C 1.46498 * 125.67514 * 0.02562 * 25 2 1 27 27 H 1.08989 * 109.47055 * 89.98102 * 1 2 3 28 28 H 1.09006 * 109.46927 * 209.98011 * 1 2 3 29 29 H 1.09001 * 109.47200 * 329.97866 * 1 2 3 30 30 H 1.08004 * 126.06075 * 0.04949 * 3 2 1 31 31 H 1.08001 * 126.45783 * 180.02562 * 4 3 2 32 32 H 0.97000 * 120.00162 * 355.47206 * 8 6 5 33 33 H 1.09007 * 109.47135 * 299.99753 * 9 8 6 34 34 H 1.08998 * 109.47456 * 59.99656 * 9 8 6 35 35 H 1.08996 * 109.46993 * 299.99504 * 10 9 8 36 36 H 1.08998 * 109.47204 * 59.99504 * 10 9 8 37 37 H 1.08998 * 109.47020 * 90.00396 * 12 11 10 38 38 H 1.09001 * 109.47292 * 210.00653 * 12 11 10 39 39 H 1.08999 * 109.47086 * 330.00138 * 12 11 10 40 40 H 1.09009 * 109.46863 * 299.99573 * 15 13 11 41 41 H 1.08990 * 109.47005 * 59.99459 * 15 13 11 42 42 H 0.96989 * 120.00050 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47215 * 266.85769 * 26 25 2 44 44 H 1.08994 * 109.47431 * 26.85725 * 26 25 2 45 45 H 1.09004 * 109.46884 * 146.85936 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6122 -0.7018 -0.0004 6 6 4.7860 -1.5814 -0.0013 7 8 4.6436 -2.7864 0.0929 8 7 6.0223 -1.0552 -0.1066 9 6 7.1986 -1.9230 -0.0081 10 6 8.4673 -1.0815 -0.1605 11 7 9.6435 -1.9492 -0.0613 12 6 10.2610 -2.1999 1.2433 13 6 10.1576 -2.5168 -1.1705 14 8 9.6462 -2.3096 -2.2505 15 6 11.3679 -3.4089 -1.0686 16 16 11.8132 -4.0120 -2.7160 17 6 13.2161 -4.9984 -2.3118 18 1 13.5440 -5.0763 -1.2857 19 6 13.8999 -5.6755 -3.3121 20 7 13.5001 -5.5810 -4.5626 21 14 15.3869 -6.7219 -2.8835 22 1 14.9826 -7.7926 -1.9373 23 1 15.9336 -7.3354 -4.1204 24 1 16.4262 -5.8698 -2.2518 25 7 2.2953 -1.1025 -0.0058 26 6 1.8242 -2.4896 -0.0137 27 1 -0.3633 0.0003 -1.0276 28 1 -0.3633 -0.8902 0.5136 29 1 -0.3634 0.8898 0.5142 30 1 1.9544 2.1268 0.0008 31 1 4.5025 1.3092 -0.0004 32 1 6.1333 -0.1020 -0.2476 33 1 7.2048 -2.4177 0.9632 34 1 7.1637 -2.6734 -0.7978 35 1 8.4609 -0.5872 -1.1319 36 1 8.5024 -0.3308 0.6290 37 1 9.8020 -3.0767 1.7000 38 1 11.3288 -2.3754 1.1122 39 1 10.1117 -1.3340 1.8883 40 1 12.2016 -2.8440 -0.6513 41 1 11.1418 -4.2553 -0.4202 42 1 13.9777 -6.0544 -5.2616 43 1 1.7603 -2.8575 1.0103 44 1 0.8395 -2.5363 -0.4786 45 1 2.5224 -3.1072 -0.5788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688307190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:51 Heat of formation + Delta-G solvation = -22.287726 kcal Electronic energy + Delta-G solvation = -25817.413090 eV Core-core repulsion = 21962.289707 eV Total energy + Delta-G solvation = -3855.123383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75685 -39.74444 -39.08818 -35.99436 -34.71682 -33.15255 -32.42771 -32.16933 -30.67429 -28.57567 -27.10786 -26.78852 -26.09042 -25.45573 -23.23505 -22.16352 -20.62018 -19.65408 -19.12809 -17.99382 -17.69243 -16.75659 -16.45248 -16.08365 -15.82572 -15.52229 -15.14978 -15.04672 -14.80239 -14.35486 -13.89260 -13.79380 -13.72067 -13.52927 -13.45205 -13.26313 -13.12792 -12.96400 -12.57236 -12.44516 -12.34796 -12.30902 -12.26435 -12.15872 -11.84738 -11.44547 -11.04591 -11.03683 -10.76770 -10.23842 -9.82105 -9.44442 -9.32383 -9.05805 -9.05287 -8.68110 -8.34691 -8.23711 -6.50523 -6.21326 -3.92322 1.19461 2.25870 2.38250 2.76944 2.98968 3.17459 3.18711 3.23709 3.28423 3.33715 3.63202 4.20307 4.40778 4.47556 4.52251 4.67154 4.74157 4.78923 4.93406 5.05872 5.07032 5.08213 5.11303 5.13677 5.19692 5.27219 5.29973 5.40484 5.43667 5.54784 5.66591 5.75665 5.78253 5.81735 5.87337 5.89507 6.11304 6.12181 6.48424 6.55446 6.69204 6.88695 7.25575 7.42523 7.59326 7.98089 8.34988 8.48277 9.23722 10.86045 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.001767 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.378099 B =15839.031187 C =16226.411095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.040 3.960 3 C -0.206 4.206 4 C -0.138 4.138 5 C -0.052 4.052 6 C 0.589 3.411 7 O -0.547 6.547 8 N -0.714 5.714 9 C 0.106 3.894 10 C 0.109 3.891 11 N -0.622 5.622 12 C 0.080 3.920 13 C 0.533 3.467 14 O -0.511 6.511 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 N -0.407 5.407 26 C 0.067 3.933 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.623 14.236 14.808 30.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.230 4.230 4 C -0.165 4.165 5 C -0.165 4.165 6 C 0.377 3.623 7 O -0.426 6.426 8 N -0.366 5.366 9 C -0.019 4.019 10 C -0.015 4.015 11 N -0.359 5.359 12 C -0.064 4.064 13 C 0.321 3.679 14 O -0.384 6.384 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 N -0.080 5.080 26 C -0.074 4.074 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.238 0.762 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.511 13.206 13.086 29.973 hybrid contribution 1.631 -0.503 1.593 2.335 sum -21.879 12.702 14.679 29.249 Atomic orbital electron populations 1.20393 0.87741 1.03489 1.02947 1.20590 0.93822 0.85835 1.07426 1.20609 0.92434 0.97765 1.12156 1.21321 0.97945 0.91845 1.05345 1.19971 0.84277 0.93530 1.18761 1.16945 0.82215 0.86775 0.76393 1.90817 1.86229 1.14813 1.50721 1.45432 1.04953 1.11992 1.74252 1.21793 0.83223 0.93872 1.02964 1.21455 0.83814 0.92298 1.03982 1.47739 1.29786 1.50306 1.08073 1.21826 0.99220 1.01382 0.83942 1.20424 0.84693 0.79597 0.83163 1.90710 1.60943 1.59798 1.26985 1.23562 0.97337 1.00845 1.08338 1.85412 1.37278 1.60446 1.00299 1.22817 1.15069 1.34035 0.96510 0.90961 1.24991 0.97816 0.96293 0.94442 1.70006 1.39613 1.40904 0.99734 0.86224 0.81414 0.79943 0.77917 1.19939 1.20809 1.19930 1.43765 1.04621 1.06674 1.52973 1.22224 1.01472 0.79579 1.04137 0.90677 0.91595 0.89776 0.84008 0.83791 0.76239 0.91214 0.90395 0.89054 0.90111 0.92595 0.90360 0.91242 0.89114 0.89123 0.92118 0.90503 0.89932 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 9.82 36.00 0.35 -0.07 16 2 C 0.04 0.34 6.87 -81.95 -0.56 -0.22 16 3 C -0.21 -1.72 10.71 -39.98 -0.43 -2.14 16 4 C -0.14 -1.24 10.35 -39.12 -0.40 -1.64 16 5 C -0.05 -0.58 6.88 -81.98 -0.56 -1.14 16 6 C 0.59 7.53 7.77 -12.85 -0.10 7.43 16 7 O -0.55 -8.76 14.83 5.19 0.08 -8.69 16 8 N -0.71 -7.44 5.53 -61.61 -0.34 -7.78 16 9 C 0.11 1.27 6.00 -4.04 -0.02 1.24 16 10 C 0.11 1.18 5.56 -4.04 -0.02 1.16 16 11 N -0.62 -8.31 2.87 -181.57 -0.52 -8.83 16 12 C 0.08 0.77 10.29 59.85 0.62 1.39 16 13 C 0.53 9.94 7.69 -10.98 -0.08 9.85 16 14 O -0.51 -11.48 15.44 5.56 0.09 -11.40 16 15 C -0.15 -3.02 4.71 36.01 0.17 -2.85 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 18 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 N -0.41 -4.11 3.16 -115.62 -0.37 -4.48 16 26 C 0.07 0.56 10.08 59.85 0.60 1.16 16 27 H 0.07 0.31 8.14 -51.94 -0.42 -0.11 16 28 H 0.07 0.27 7.59 -51.93 -0.39 -0.13 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.14 0.90 7.48 -52.49 -0.39 0.51 16 32 H 0.40 2.98 7.41 -40.82 -0.30 2.67 16 33 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 36 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 39 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 40 H 0.09 1.67 7.40 -51.91 -0.38 1.28 16 41 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.46 7.44 -51.93 -0.39 0.07 16 45 H 0.10 1.04 6.64 -51.93 -0.34 0.70 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -37.96 392.96 -8.57 -46.53 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.67 Total: 0.51 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.25 Total: 1.20 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.49 Total: -46.58 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.16 Total: -20.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.96 -8.57 -46.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688307190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.240 kcal (2) G-P(sol) polarization free energy of solvation -37.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds