Wall clock time and date at job start Tue Mar 31 2020 23:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 125.56667 * 2 1 4 4 C 1.39831 * 107.86830 * 180.02562 * 3 2 1 5 5 C 1.37868 * 107.08335 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.22952 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00057 * 174.88756 * 6 5 4 8 8 N 1.34773 * 120.00254 * 354.88844 * 6 5 4 9 9 C 1.46500 * 120.00119 * 175.47677 * 8 6 5 10 10 C 1.53002 * 109.47182 * 179.97438 * 9 8 6 11 11 N 1.46501 * 109.46948 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00123 * 269.99671 * 11 10 9 13 13 C 1.34778 * 119.99830 * 90.00112 * 11 10 9 14 14 O 1.21281 * 120.00281 * 359.97438 * 13 11 10 15 15 C 1.50702 * 119.99959 * 179.97438 * 13 11 10 16 16 S 1.80997 * 109.46975 * 180.02562 * 15 13 11 17 17 C 1.76199 * 99.99865 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00294 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00183 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00084 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47312 * 59.99453 * 21 19 17 23 23 H 1.48498 * 109.47401 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46834 * 300.00036 * 21 19 17 25 25 N 1.35537 * 125.56636 * 180.30367 * 2 1 3 26 26 C 1.46498 * 125.67514 * 0.02562 * 25 2 1 27 27 H 1.08989 * 109.47055 * 89.98102 * 1 2 3 28 28 H 1.09006 * 109.46927 * 209.98011 * 1 2 3 29 29 H 1.09001 * 109.47200 * 329.97866 * 1 2 3 30 30 H 1.08004 * 126.06075 * 0.04949 * 3 2 1 31 31 H 1.08001 * 126.45783 * 180.02562 * 4 3 2 32 32 H 0.97000 * 120.00162 * 355.47206 * 8 6 5 33 33 H 1.09007 * 109.47135 * 299.99753 * 9 8 6 34 34 H 1.08998 * 109.47456 * 59.99656 * 9 8 6 35 35 H 1.08996 * 109.46993 * 299.99504 * 10 9 8 36 36 H 1.08998 * 109.47204 * 59.99504 * 10 9 8 37 37 H 1.08998 * 109.47020 * 90.00396 * 12 11 10 38 38 H 1.09001 * 109.47292 * 210.00653 * 12 11 10 39 39 H 1.08999 * 109.47086 * 330.00138 * 12 11 10 40 40 H 1.09009 * 109.46863 * 299.99573 * 15 13 11 41 41 H 1.08990 * 109.47005 * 59.99459 * 15 13 11 42 42 H 0.96989 * 120.00050 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47215 * 266.85769 * 26 25 2 44 44 H 1.08994 * 109.47431 * 26.85725 * 26 25 2 45 45 H 1.09004 * 109.46884 * 146.85936 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6768 -0.0006 5 6 3.6122 -0.7018 -0.0004 6 6 4.7860 -1.5814 -0.0013 7 8 4.6436 -2.7864 0.0929 8 7 6.0223 -1.0552 -0.1066 9 6 7.1986 -1.9230 -0.0081 10 6 8.4673 -1.0815 -0.1605 11 7 9.6435 -1.9492 -0.0613 12 6 10.2610 -2.1999 1.2433 13 6 10.1576 -2.5168 -1.1705 14 8 9.6462 -2.3096 -2.2505 15 6 11.3679 -3.4089 -1.0686 16 16 11.8132 -4.0120 -2.7160 17 6 13.2161 -4.9984 -2.3118 18 1 13.5440 -5.0763 -1.2857 19 6 13.8999 -5.6755 -3.3121 20 7 13.5001 -5.5810 -4.5626 21 14 15.3869 -6.7219 -2.8835 22 1 14.9826 -7.7926 -1.9373 23 1 15.9336 -7.3354 -4.1204 24 1 16.4262 -5.8698 -2.2518 25 7 2.2953 -1.1025 -0.0058 26 6 1.8242 -2.4896 -0.0137 27 1 -0.3633 0.0003 -1.0276 28 1 -0.3633 -0.8902 0.5136 29 1 -0.3634 0.8898 0.5142 30 1 1.9544 2.1268 0.0008 31 1 4.5025 1.3092 -0.0004 32 1 6.1333 -0.1020 -0.2476 33 1 7.2048 -2.4177 0.9632 34 1 7.1637 -2.6734 -0.7978 35 1 8.4609 -0.5872 -1.1319 36 1 8.5024 -0.3308 0.6290 37 1 9.8020 -3.0767 1.7000 38 1 11.3288 -2.3754 1.1122 39 1 10.1117 -1.3340 1.8883 40 1 12.2016 -2.8440 -0.6513 41 1 11.1418 -4.2553 -0.4202 42 1 13.9777 -6.0544 -5.2616 43 1 1.7603 -2.8575 1.0103 44 1 0.8395 -2.5363 -0.4786 45 1 2.5224 -3.1072 -0.5788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688307190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:50 Heat of formation + Delta-G solvation = -49.135393 kcal Electronic energy + Delta-G solvation = -25818.577292 eV Core-core repulsion = 21962.289707 eV Total energy + Delta-G solvation = -3856.287585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45300 -40.99080 -40.14260 -37.19022 -35.79086 -34.58888 -33.84824 -32.79499 -31.82329 -29.81203 -27.89481 -27.69756 -27.44536 -26.92056 -24.22466 -23.00324 -21.42806 -20.73342 -20.12636 -19.54801 -18.79179 -18.11726 -17.54779 -16.91508 -16.88857 -16.80450 -16.78193 -16.06375 -16.04296 -15.74223 -15.16402 -14.84728 -14.50745 -14.46310 -14.28908 -14.25242 -14.11955 -13.99166 -13.59358 -13.56980 -13.24796 -13.16460 -13.08510 -12.96976 -12.89033 -12.86391 -12.65762 -12.63141 -12.37172 -11.74137 -11.25782 -11.13143 -10.94346 -10.31537 -10.27877 -9.82028 -9.72325 -9.02782 -8.68302 -8.34795 -6.13573 0.41285 1.21933 1.39989 1.43783 1.49387 1.55197 1.63243 1.73212 2.03204 2.27096 2.31950 2.48603 2.99238 3.25759 3.66635 3.70438 3.83285 3.90373 3.93380 4.00999 4.20547 4.26160 4.28480 4.29154 4.40489 4.48470 4.50785 4.60868 4.68530 4.72254 4.73027 4.79400 4.86109 4.96742 5.09264 5.16479 5.19458 5.23689 5.40986 5.52248 5.85372 6.00535 6.18294 6.20405 6.27416 6.43808 7.06102 7.07423 7.10527 8.74235 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.001767 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.378099 B =15839.031187 C =16226.411095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.044 3.956 3 C -0.220 4.220 4 C -0.127 4.127 5 C -0.094 4.094 6 C 0.583 3.417 7 O -0.592 6.592 8 N -0.701 5.701 9 C 0.117 3.883 10 C 0.112 3.888 11 N -0.608 5.608 12 C 0.069 3.931 13 C 0.530 3.470 14 O -0.562 6.562 15 C -0.124 4.124 16 S -0.156 6.156 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.260 1.260 25 N -0.420 5.420 26 C 0.067 3.933 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.419 0.581 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.271 0.729 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.932 16.016 17.675 33.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.243 4.243 4 C -0.153 4.153 5 C -0.206 4.206 6 C 0.373 3.627 7 O -0.474 6.474 8 N -0.353 5.353 9 C -0.008 4.008 10 C -0.011 4.011 11 N -0.342 5.342 12 C -0.073 4.073 13 C 0.318 3.682 14 O -0.440 6.440 15 C -0.275 4.275 16 S 0.071 5.929 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.184 1.184 25 N -0.094 5.094 26 C -0.073 4.073 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.257 0.743 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.816 15.042 16.013 32.402 hybrid contribution 1.568 -0.935 0.802 1.995 sum -22.248 14.107 16.816 31.253 Atomic orbital electron populations 1.20541 0.85213 1.04822 1.03973 1.21298 0.95487 0.85334 1.05286 1.21014 0.92124 0.98957 1.12211 1.21727 0.99395 0.91062 1.03132 1.19950 0.84291 0.94198 1.22157 1.17336 0.83234 0.86510 0.75639 1.90785 1.86890 1.16716 1.53039 1.45258 1.03967 1.12621 1.73470 1.21557 0.84387 0.93494 1.01411 1.21634 0.81987 0.92243 1.05225 1.47712 1.29764 1.48821 1.07952 1.22183 0.99004 1.03803 0.82269 1.20216 0.84347 0.79729 0.83949 1.90693 1.62286 1.61731 1.29241 1.23386 0.99023 1.01812 1.03301 1.85607 1.38260 1.61548 1.07444 1.23168 1.15015 1.34041 0.97189 0.89793 1.26147 1.01285 0.97613 0.94132 1.70182 1.41368 1.42182 1.01080 0.84995 0.77026 0.78040 0.77880 1.18748 1.20446 1.18429 1.44005 1.04641 1.07462 1.53340 1.22227 1.02039 0.78957 1.04125 0.89662 0.90763 0.87985 0.81644 0.81356 0.74311 0.90718 0.95019 0.90464 0.84942 0.91631 0.90344 0.87215 0.86895 0.87625 0.92011 0.90294 0.87071 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.82 71.24 0.70 0.08 16 2 C 0.04 0.65 6.87 41.34 0.28 0.94 16 3 C -0.22 -3.15 10.71 22.01 0.24 -2.92 16 4 C -0.13 -2.05 10.35 22.57 0.23 -1.82 16 5 C -0.09 -2.08 6.88 40.35 0.28 -1.80 16 6 C 0.58 15.40 7.77 86.45 0.67 16.07 16 7 O -0.59 -20.25 14.83 -4.35 -0.06 -20.31 16 8 N -0.70 -14.43 5.53 -467.07 -2.58 -17.01 16 9 C 0.12 2.79 6.00 86.38 0.52 3.31 16 10 C 0.11 2.24 5.56 86.38 0.48 2.72 16 11 N -0.61 -15.22 2.87 -846.77 -2.43 -17.66 16 12 C 0.07 1.10 10.29 127.77 1.31 2.41 16 13 C 0.53 19.86 7.69 87.66 0.67 20.54 16 14 O -0.56 -26.37 15.44 -3.03 -0.05 -26.41 16 15 C -0.12 -4.98 4.71 71.24 0.34 -4.65 16 16 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 17 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.74 5.49 84.86 0.47 1.21 16 20 N -0.91 -56.62 13.22 21.65 0.29 -56.34 16 21 Si 1.00 43.81 29.55 68.60 2.03 45.83 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 N -0.42 -8.34 3.16 -519.72 -1.64 -9.98 16 26 C 0.07 1.15 10.08 127.77 1.29 2.44 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.42 7.59 -2.38 -0.02 0.40 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 31 H 0.17 1.66 7.48 -2.91 -0.02 1.64 16 32 H 0.42 5.60 7.41 -92.71 -0.69 4.92 16 33 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.83 7.42 -2.39 -0.02 1.81 16 36 H 0.13 1.36 7.89 -2.39 -0.02 1.34 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.29 6.44 -2.39 -0.02 1.27 16 39 H 0.11 0.94 7.89 -2.39 -0.02 0.92 16 40 H 0.11 4.00 7.40 -2.39 -0.02 3.98 16 41 H 0.11 3.89 8.11 -2.40 -0.02 3.87 16 42 H 0.27 15.65 8.31 -92.72 -0.77 14.88 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.11 1.14 7.44 -2.39 -0.02 1.13 16 45 H 0.07 1.67 6.64 -2.39 -0.02 1.66 16 Total: -1.00 -88.98 392.96 2.82 -86.15 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.32 Total: 17.93 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 8.12 Total: 7.75 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -6.37 Total: -100.99 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.11 Total: -46.72 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -88.98 2.82 -86.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688307190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.017 kcal (2) G-P(sol) polarization free energy of solvation -88.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds