Wall clock time and date at job start Tue Mar 31 2020 23:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32763 * 124.71477 * 2 1 4 4 C 1.44427 * 113.08603 * 180.02562 * 3 2 1 5 5 C 1.47192 * 123.46126 * 179.97438 * 4 3 2 6 6 O 1.21640 * 119.99825 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00128 * 0.02700 * 5 4 3 8 8 C 1.46502 * 119.99850 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46667 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.47200 * 65.00033 * 9 8 7 11 11 C 1.53006 * 109.47059 * 184.99936 * 9 8 7 12 12 N 1.46899 * 109.47347 * 304.99898 * 9 8 7 13 13 C 1.46904 * 111.00142 * 155.00450 * 12 9 8 14 14 C 1.50699 * 109.47038 * 180.02562 * 13 12 9 15 15 O 1.21287 * 119.99991 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99613 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99405 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00650 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99537 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99783 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00039 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47028 * 89.99838 * 21 19 17 23 23 H 1.48503 * 109.47105 * 209.99693 * 21 19 17 24 24 H 1.48500 * 109.47186 * 329.99839 * 21 19 17 25 25 C 1.36010 * 113.07821 * 359.97438 * 4 3 2 26 26 C 1.50694 * 124.59292 * 180.02562 * 25 4 3 27 27 S 1.70447 * 110.81546 * 0.02562 * 25 4 3 28 28 H 1.09002 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46738 * 299.99782 * 1 2 3 30 30 H 1.08998 * 109.47156 * 59.99343 * 1 2 3 31 31 H 1.07999 * 123.46116 * 0.02656 * 3 2 1 32 32 H 0.97001 * 119.99583 * 359.97438 * 7 5 4 33 33 H 1.08994 * 109.47089 * 299.99327 * 8 7 5 34 34 H 1.08996 * 109.47295 * 59.99672 * 8 7 5 35 35 H 1.08995 * 109.47396 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46774 * 299.99965 * 11 9 8 37 37 H 1.08994 * 109.47154 * 59.99734 * 11 9 8 38 38 H 1.00893 * 110.99629 * 31.04538 * 12 9 8 39 39 H 1.09001 * 109.46819 * 299.99932 * 13 12 9 40 40 H 1.08996 * 109.46983 * 59.99726 * 13 12 9 41 41 H 0.96993 * 120.00205 * 0.02562 * 16 14 13 42 42 H 0.97003 * 119.99860 * 180.02562 * 20 19 17 43 43 H 1.09007 * 109.47301 * 180.02562 * 26 25 4 44 44 H 1.08995 * 109.47557 * 300.00298 * 26 25 4 45 45 H 1.08998 * 109.47289 * 60.00713 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8002 -0.0006 5 6 4.7201 1.8394 -0.0013 6 8 5.8946 1.5226 -0.0022 7 7 4.3734 3.1417 -0.0008 8 6 5.4110 4.1760 -0.0020 9 6 4.7537 5.5576 -0.0018 10 1 4.2063 5.6994 0.9300 11 6 5.8323 6.6355 -0.1288 12 7 3.8250 5.6583 -1.1355 13 6 2.7753 6.6510 -0.8696 14 6 1.8435 6.7257 -2.0517 15 8 2.0354 6.0217 -3.0205 16 7 0.7971 7.5749 -2.0322 17 6 -0.0502 7.6432 -3.1079 18 1 0.1205 7.0163 -3.9706 19 6 -1.1294 8.5183 -3.0876 20 7 -1.9419 8.5835 -4.1184 21 14 -1.4252 9.6021 -1.5952 22 1 -0.7037 10.8887 -1.7670 23 1 -2.8799 9.8653 -1.4551 24 1 -0.9270 8.9140 -0.3772 25 6 3.9477 -0.5328 -0.0005 26 6 5.3333 -1.1251 -0.0004 27 16 2.5064 -1.4428 -0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8616 2.0939 0.0004 32 1 3.4368 3.3942 -0.0004 33 1 6.0320 4.0686 0.8872 34 1 6.0300 4.0686 -0.8927 35 1 5.3641 7.6198 -0.1282 36 1 6.5213 6.5607 0.7124 37 1 6.3797 6.4936 -1.0606 38 1 3.4247 4.7588 -1.3558 39 1 2.2137 6.3572 0.0172 40 1 3.2317 7.6268 -0.7039 41 1 0.6440 8.1382 -1.2576 42 1 -2.6950 9.1947 -4.1045 43 1 5.2636 -2.2130 -0.0008 44 1 5.8694 -0.7955 -0.8904 45 1 5.8694 -0.7955 0.8895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690598176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:35 Heat of formation + Delta-G solvation = -70.872826 kcal Electronic energy + Delta-G solvation = -26655.812053 eV Core-core repulsion = 22798.581862 eV Total energy + Delta-G solvation = -3857.230191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16683 -40.32478 -38.60764 -37.88988 -36.02375 -35.08076 -33.96723 -33.74289 -32.19016 -30.35025 -28.29963 -27.81096 -26.03436 -25.48865 -24.24097 -21.95241 -21.56884 -21.30026 -20.39382 -20.09240 -18.28481 -18.16588 -17.51622 -16.98297 -16.89238 -16.70453 -16.48546 -15.96753 -15.63312 -15.30185 -14.98367 -14.86153 -14.77662 -14.44121 -14.22673 -14.17706 -14.13964 -13.88789 -13.65187 -13.53554 -13.33704 -12.96875 -12.91668 -12.80997 -12.58957 -12.56703 -12.54097 -12.40367 -11.96934 -11.92229 -11.87986 -11.50766 -10.97252 -10.43485 -10.24668 -10.23640 -9.60539 -9.39965 -9.38661 -8.40528 -6.01573 -0.25668 0.46594 0.84588 0.89936 1.30719 1.36867 1.45493 1.95973 2.15577 2.23888 2.28247 2.69290 3.15943 3.34572 3.59700 3.67304 3.77575 4.06872 4.10405 4.19167 4.20570 4.34821 4.41776 4.46953 4.56094 4.59153 4.61743 4.64386 4.73660 4.78172 4.86816 4.93723 5.03355 5.05330 5.12484 5.13721 5.28748 5.34470 5.46511 5.53608 5.90229 6.03202 6.30310 6.37298 6.60276 6.89006 7.10111 7.40489 7.97313 8.77170 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002797 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.557161 B =10007.660325 C =11964.529115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.204 4.204 3 C -0.127 4.127 4 C -0.194 4.194 5 C 0.577 3.423 6 O -0.569 6.569 7 N -0.720 5.720 8 C 0.123 3.877 9 C 0.079 3.921 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.685 5.685 13 C 0.060 3.940 14 C 0.448 3.552 15 O -0.614 6.614 16 N -0.589 5.589 17 C -0.328 4.328 18 H 0.054 0.946 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.228 1.228 25 C -0.162 4.162 26 C -0.074 4.074 27 S 0.228 5.772 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.404 0.596 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.341 0.659 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -14.925 19.061 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.321 4.321 3 C -0.155 4.155 4 C -0.211 4.211 5 C 0.365 3.635 6 O -0.450 6.450 7 N -0.372 5.372 8 C 0.000 4.000 9 C -0.030 4.030 10 H 0.092 0.908 11 C -0.195 4.195 12 N -0.320 5.320 13 C -0.072 4.072 14 C 0.236 3.764 15 O -0.499 6.499 16 N -0.231 5.231 17 C -0.457 4.457 18 H 0.072 0.928 19 C -0.214 4.214 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.183 1.183 23 H -0.201 1.201 24 H -0.151 1.151 25 C -0.282 4.282 26 C -0.133 4.133 27 S 0.495 5.505 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.170 0.830 32 H 0.240 0.760 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.162 0.838 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.279 -16.617 17.966 26.544 hybrid contribution -1.131 2.063 0.410 2.388 sum 9.148 -14.554 18.376 25.163 Atomic orbital electron populations 1.20458 0.85823 1.04127 1.03929 1.24660 1.01676 0.96146 1.09596 1.21177 0.90496 1.00383 1.03440 1.20128 0.93662 0.93126 1.14206 1.17793 0.87713 0.82545 0.75471 1.90738 1.19832 1.82560 1.51875 1.45859 1.10900 1.05410 1.75026 1.21600 0.90347 0.85270 1.02830 1.21873 0.94536 0.94196 0.92395 0.90824 1.21753 0.97612 0.97654 1.02502 1.60113 1.19487 1.12296 1.40105 1.21738 0.91948 0.99641 0.93879 1.20985 0.82918 0.82189 0.90350 1.90562 1.74742 1.46596 1.37978 1.42014 1.25570 1.38188 1.17342 1.18993 1.06930 1.23016 0.96777 0.92795 1.26127 0.94772 0.98943 1.01546 1.69811 1.16579 1.38665 1.32542 0.85366 0.78844 0.78931 0.78371 1.18348 1.20150 1.15094 1.24798 1.03337 0.97011 1.03102 1.20370 0.88959 1.00355 1.03581 1.82772 0.91310 1.07167 1.69263 0.89855 0.89279 0.90420 0.83029 0.75957 0.89459 0.92128 0.91743 0.90016 0.92993 0.83816 0.89926 0.86579 0.77424 0.91171 0.89448 0.90972 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.35 71.24 0.74 -0.43 16 2 C -0.20 -3.74 6.44 24.51 0.16 -3.58 16 3 C -0.13 -2.68 9.75 22.67 0.22 -2.46 16 4 C -0.19 -4.72 5.98 -19.87 -0.12 -4.84 16 5 C 0.58 15.62 7.79 86.60 0.67 16.29 16 6 O -0.57 -18.15 14.64 -4.16 -0.06 -18.21 16 7 N -0.72 -16.36 4.97 -466.60 -2.32 -18.68 16 8 C 0.12 2.61 5.31 86.38 0.46 3.07 16 9 C 0.08 1.53 2.81 44.92 0.13 1.66 16 10 H 0.07 1.12 7.80 -2.39 -0.02 1.11 16 11 C -0.14 -2.39 9.42 71.98 0.68 -1.71 16 12 N -0.68 -18.90 5.93 -495.56 -2.94 -21.84 16 13 C 0.06 1.68 5.97 85.56 0.51 2.19 16 14 C 0.45 19.41 7.82 87.66 0.69 20.10 16 15 O -0.61 -33.44 15.78 -3.05 -0.05 -33.49 16 16 N -0.59 -26.79 5.09 -306.98 -1.56 -28.35 16 17 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 18 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 19 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 20 N -0.94 -55.82 13.96 21.66 0.30 -55.52 16 21 Si 0.97 37.67 27.74 68.60 1.90 39.57 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 25 C -0.16 -3.50 6.34 25.17 0.16 -3.34 16 26 C -0.07 -1.45 8.77 71.23 0.62 -0.83 16 27 S 0.23 3.74 22.92 -56.49 -1.29 2.45 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.15 2.87 7.10 -2.91 -0.02 2.85 16 32 H 0.40 8.18 5.91 -92.71 -0.55 7.64 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.10 7.45 -2.39 -0.02 1.08 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.34 10.27 6.41 -89.70 -0.58 9.70 16 39 H 0.08 1.76 8.06 -2.39 -0.02 1.74 16 40 H 0.12 2.73 7.44 -2.39 -0.02 2.71 16 41 H 0.39 14.46 5.76 -92.71 -0.53 13.92 16 42 H 0.28 15.20 8.31 -92.71 -0.77 14.42 16 43 H 0.09 1.19 8.12 -2.38 -0.02 1.17 16 44 H 0.07 1.62 7.78 -2.39 -0.02 1.60 16 45 H 0.08 1.63 7.78 -2.39 -0.02 1.61 16 Total: -1.00 -80.02 386.45 -0.45 -80.47 By element: Atomic # 1 Polarization: 46.53 SS G_CDS: -0.67 Total: 45.85 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 6.24 Total: 7.74 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -6.51 Total: -124.39 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.11 Total: -51.70 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.90 Total: 39.57 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.29 Total: 2.45 kcal Total: -80.02 -0.45 -80.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690598176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.601 kcal (2) G-P(sol) polarization free energy of solvation -80.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds