Wall clock time and date at job start Tue Mar 31 2020 23:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75878 * 125.20480 * 2 1 4 4 C 1.75884 * 90.97033 * 180.02562 * 3 2 1 5 5 C 1.33386 * 109.59706 * 0.02562 * 4 3 2 6 6 C 1.33394 * 125.20048 * 180.02562 * 2 1 3 7 7 C 1.50699 * 122.53859 * 359.70222 * 6 2 1 8 8 C 1.50697 * 109.46946 * 85.00349 * 7 6 2 9 9 O 1.21275 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99816 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47153 * 179.97438 * 11 10 8 13 13 N 1.46905 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.46897 * 110.99705 * 66.04864 * 13 12 11 15 15 C 1.46897 * 110.99902 * 190.00271 * 13 12 11 16 16 C 1.50696 * 109.47013 * 170.00413 * 15 13 12 17 17 O 1.21295 * 119.99928 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99868 * 179.97438 * 16 15 13 19 19 C 1.37106 * 120.00098 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99695 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00014 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00240 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99618 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47266 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46971 * 119.99869 * 23 21 19 26 26 H 1.48503 * 109.47029 * 239.99354 * 23 21 19 27 27 H 1.09006 * 109.46630 * 269.97038 * 1 2 3 28 28 H 1.09002 * 109.46774 * 29.96908 * 1 2 3 29 29 H 1.08994 * 109.47373 * 149.97223 * 1 2 3 30 30 H 1.08002 * 125.20650 * 180.02562 * 4 3 2 31 31 H 1.07999 * 122.54538 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47229 * 205.00733 * 7 6 2 33 33 H 1.08999 * 109.47288 * 325.00551 * 7 6 2 34 34 H 0.97000 * 120.00344 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.47561 * 299.99955 * 11 10 8 36 36 H 1.09004 * 109.47363 * 60.00066 * 11 10 8 37 37 H 1.08999 * 109.46932 * 299.99888 * 12 11 10 38 38 H 1.08999 * 109.47031 * 60.00261 * 12 11 10 39 39 H 1.08996 * 109.47408 * 59.99885 * 14 13 12 40 40 H 1.08999 * 109.46789 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47295 * 299.99526 * 14 13 12 42 42 H 1.09005 * 109.47024 * 289.99761 * 15 13 12 43 43 H 1.08996 * 109.47185 * 50.00060 * 15 13 12 44 44 H 0.96999 * 120.00581 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99941 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 6 3.6380 -0.8430 -0.0016 6 6 2.2760 -1.0900 -0.0005 7 6 1.7051 -2.4847 0.0055 8 6 1.3943 -2.9063 -1.4075 9 8 1.6142 -2.1487 -2.3287 10 7 0.8719 -4.1252 -1.6476 11 6 0.5703 -4.5353 -3.0213 12 6 -0.0082 -5.9518 -3.0154 13 7 -0.3113 -6.3627 -4.3928 14 6 0.9182 -6.4907 -5.1865 15 6 -1.0826 -7.6128 -4.4116 16 6 -1.5833 -7.8731 -5.8089 17 8 -1.3236 -7.0936 -6.7012 18 7 -2.3197 -8.9719 -6.0670 19 6 -2.7758 -9.2085 -7.3382 20 1 -2.5445 -8.5145 -8.1328 21 6 -3.5354 -10.3412 -7.6042 22 7 -3.8164 -11.1859 -6.6375 23 14 -4.1561 -10.6638 -9.3363 24 1 -3.7058 -9.5708 -10.2351 25 1 -3.6163 -11.9590 -9.8223 26 1 -5.6401 -10.7178 -9.3283 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 4.9863 0.8269 -0.0007 31 1 4.3720 -1.6352 -0.0017 32 1 2.4312 -3.1727 0.4386 33 1 0.7909 -2.5005 0.5988 34 1 0.6957 -4.7311 -0.9108 35 1 -0.1560 -3.8476 -3.4547 36 1 1.4847 -4.5192 -3.6144 37 1 0.7184 -6.6392 -2.5823 38 1 -0.9226 -5.9683 -2.4222 39 1 1.5671 -7.2399 -4.7330 40 1 0.6650 -6.7955 -6.2019 41 1 1.4347 -5.5313 -5.2137 42 1 -0.4449 -8.4380 -4.0946 43 1 -1.9303 -7.5268 -3.7319 44 1 -2.5271 -9.5955 -5.3536 45 1 -4.3464 -11.9767 -6.8234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690981859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:48 Heat of formation + Delta-G solvation = -34.510785 kcal Electronic energy + Delta-G solvation = -25756.048638 eV Core-core repulsion = 21900.395224 eV Total energy + Delta-G solvation = -3855.653415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21236 -38.74191 -38.16838 -36.73963 -34.62105 -33.81018 -32.54287 -31.26888 -30.90613 -29.10381 -27.68701 -26.06862 -25.17552 -23.84185 -22.89344 -21.24484 -20.76108 -19.17788 -18.67509 -17.85802 -17.45839 -17.27536 -16.38786 -16.09317 -15.84379 -15.52774 -14.96537 -14.65207 -14.63558 -14.29463 -14.10372 -13.73937 -13.59641 -13.48865 -13.27582 -13.10359 -13.04517 -12.70446 -12.33387 -12.14139 -12.10699 -11.83818 -11.80162 -11.52505 -11.40371 -11.28690 -11.05895 -10.98681 -10.95845 -10.34337 -10.23167 -10.07180 -9.49480 -9.19441 -8.80056 -8.63095 -8.48787 -7.99705 -7.89874 -6.42574 -3.83222 0.74386 1.37134 1.72572 2.32859 2.48519 3.04389 3.16013 3.26844 3.34321 3.89271 4.05720 4.27367 4.42228 4.54182 4.65217 4.77660 4.88195 4.97994 5.02815 5.05484 5.11997 5.21222 5.21668 5.24171 5.32489 5.38374 5.62467 5.64228 5.68079 5.78908 5.83947 5.89097 5.92012 6.00175 6.08935 6.23119 6.24127 6.27718 6.55162 7.18160 7.29100 7.33329 7.55031 8.06013 8.06971 8.61053 9.17753 9.53603 10.05439 10.75245 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.001523 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.862318 B =18380.084909 C =18439.850564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.159 4.159 3 S 0.093 5.907 4 C -0.218 4.218 5 C -0.117 4.117 6 C -0.094 4.094 7 C -0.081 4.081 8 C 0.512 3.488 9 O -0.526 6.526 10 N -0.732 5.732 11 C 0.122 3.878 12 C 0.045 3.955 13 N -0.515 5.515 14 C 0.018 3.982 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.399 0.601 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.079 0.921 39 H 0.015 0.985 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 16.859 21.135 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.276 4.276 3 S 0.357 5.643 4 C -0.353 4.353 5 C -0.147 4.147 6 C -0.106 4.106 7 C -0.123 4.123 8 C 0.297 3.703 9 O -0.401 6.401 10 N -0.385 5.385 11 C -0.002 4.002 12 C -0.084 4.084 13 N -0.239 5.239 14 C -0.130 4.130 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.180 0.820 31 H 0.155 0.845 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.232 0.768 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.034 0.966 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.775 19.720 19.601 30.195 hybrid contribution 0.318 -3.177 0.345 3.211 sum 12.094 16.543 19.946 28.597 Atomic orbital electron populations 1.20351 0.87869 1.03589 1.02436 1.24252 0.99886 0.95271 1.08226 1.84194 0.97076 1.09543 1.73470 1.25437 1.01724 0.96657 1.11453 1.19959 0.95406 0.96571 1.02786 1.18163 0.92880 0.94071 1.05507 1.20350 1.03004 0.94120 0.94839 1.20513 0.77275 0.81314 0.91210 1.90752 1.51414 1.52033 1.45910 1.45963 1.65698 1.17009 1.09797 1.21328 1.01091 0.95662 0.82081 1.22255 1.00088 0.94797 0.91275 1.61445 1.21104 1.31816 1.09574 1.22625 0.89493 1.00043 1.00800 1.21867 0.98069 0.90427 0.98053 1.19709 0.84234 0.83758 0.89412 1.90497 1.61074 1.47520 1.46892 1.41869 1.46260 1.20837 1.11171 1.19760 1.29123 1.07115 0.86750 0.87826 1.25257 0.97373 0.95753 0.99582 1.69618 1.39382 1.13052 1.32320 0.85802 0.78323 0.78350 0.81887 1.19206 1.20793 1.20757 0.90636 0.91079 0.90603 0.81955 0.84459 0.87945 0.87964 0.76755 0.90319 0.91252 0.94590 0.90301 0.96631 0.88375 0.91861 0.93359 0.89319 0.77513 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.78 36.01 0.35 -0.28 16 2 C -0.16 -1.49 6.50 -36.00 -0.23 -1.72 16 3 S 0.09 0.81 23.33 -107.50 -2.51 -1.70 16 4 C -0.22 -1.82 11.23 29.04 0.33 -1.50 16 5 C -0.12 -1.04 9.96 -41.21 -0.41 -1.45 16 6 C -0.09 -0.87 4.29 -106.25 -0.46 -1.32 16 7 C -0.08 -0.57 5.34 -29.04 -0.16 -0.73 16 8 C 0.51 5.37 7.55 -10.99 -0.08 5.29 16 9 O -0.53 -8.06 16.03 5.56 0.09 -7.97 16 10 N -0.73 -6.46 5.56 -60.29 -0.33 -6.80 16 11 C 0.12 1.43 5.60 -4.04 -0.02 1.40 16 12 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 13 N -0.52 -8.34 4.50 -244.37 -1.10 -9.44 16 14 C 0.02 0.29 8.96 60.06 0.54 0.83 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 16 C 0.44 10.33 7.47 -10.99 -0.08 10.25 16 17 O -0.58 -15.42 13.91 5.54 0.08 -15.34 16 18 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.61 7.19 -51.93 -0.37 0.24 16 30 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.10 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.10 0.50 7.52 -51.93 -0.39 0.11 16 34 H 0.40 2.19 8.47 -40.82 -0.35 1.85 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.91 6.55 -51.93 -0.34 0.56 16 37 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 41 H 0.06 0.93 6.47 -51.93 -0.34 0.60 16 42 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 43 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 44 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -34.55 389.23 -9.33 -43.88 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.55 Total: 9.20 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -0.51 Total: 4.15 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.77 Total: -54.04 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.55 -9.33 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690981859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.372 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds