Wall clock time and date at job start Tue Mar 31 2020 23:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75878 * 125.20480 * 2 1 4 4 C 1.75884 * 90.97033 * 180.02562 * 3 2 1 5 5 C 1.33386 * 109.59706 * 0.02562 * 4 3 2 6 6 C 1.33394 * 125.20048 * 180.02562 * 2 1 3 7 7 C 1.50699 * 122.53859 * 359.70222 * 6 2 1 8 8 C 1.50697 * 109.46946 * 85.00349 * 7 6 2 9 9 O 1.21275 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99816 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47153 * 179.97438 * 11 10 8 13 13 N 1.46905 * 109.47141 * 179.97438 * 12 11 10 14 14 C 1.46897 * 110.99705 * 66.04864 * 13 12 11 15 15 C 1.46897 * 110.99902 * 190.00271 * 13 12 11 16 16 C 1.50696 * 109.47013 * 170.00413 * 15 13 12 17 17 O 1.21295 * 119.99928 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99868 * 179.97438 * 16 15 13 19 19 C 1.37106 * 120.00098 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99695 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00014 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00240 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99618 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47266 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46971 * 119.99869 * 23 21 19 26 26 H 1.48503 * 109.47029 * 239.99354 * 23 21 19 27 27 H 1.09006 * 109.46630 * 269.97038 * 1 2 3 28 28 H 1.09002 * 109.46774 * 29.96908 * 1 2 3 29 29 H 1.08994 * 109.47373 * 149.97223 * 1 2 3 30 30 H 1.08002 * 125.20650 * 180.02562 * 4 3 2 31 31 H 1.07999 * 122.54538 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47229 * 205.00733 * 7 6 2 33 33 H 1.08999 * 109.47288 * 325.00551 * 7 6 2 34 34 H 0.97000 * 120.00344 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.47561 * 299.99955 * 11 10 8 36 36 H 1.09004 * 109.47363 * 60.00066 * 11 10 8 37 37 H 1.08999 * 109.46932 * 299.99888 * 12 11 10 38 38 H 1.08999 * 109.47031 * 60.00261 * 12 11 10 39 39 H 1.08996 * 109.47408 * 59.99885 * 14 13 12 40 40 H 1.08999 * 109.46789 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47295 * 299.99526 * 14 13 12 42 42 H 1.09005 * 109.47024 * 289.99761 * 15 13 12 43 43 H 1.08996 * 109.47185 * 50.00060 * 15 13 12 44 44 H 0.96999 * 120.00581 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99941 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 6 3.6380 -0.8430 -0.0016 6 6 2.2760 -1.0900 -0.0005 7 6 1.7051 -2.4847 0.0055 8 6 1.3943 -2.9063 -1.4075 9 8 1.6142 -2.1487 -2.3287 10 7 0.8719 -4.1252 -1.6476 11 6 0.5703 -4.5353 -3.0213 12 6 -0.0082 -5.9518 -3.0154 13 7 -0.3113 -6.3627 -4.3928 14 6 0.9182 -6.4907 -5.1865 15 6 -1.0826 -7.6128 -4.4116 16 6 -1.5833 -7.8731 -5.8089 17 8 -1.3236 -7.0936 -6.7012 18 7 -2.3197 -8.9719 -6.0670 19 6 -2.7758 -9.2085 -7.3382 20 1 -2.5445 -8.5145 -8.1328 21 6 -3.5354 -10.3412 -7.6042 22 7 -3.8164 -11.1859 -6.6375 23 14 -4.1561 -10.6638 -9.3363 24 1 -3.7058 -9.5708 -10.2351 25 1 -3.6163 -11.9590 -9.8223 26 1 -5.6401 -10.7178 -9.3283 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 4.9863 0.8269 -0.0007 31 1 4.3720 -1.6352 -0.0017 32 1 2.4312 -3.1727 0.4386 33 1 0.7909 -2.5005 0.5988 34 1 0.6957 -4.7311 -0.9108 35 1 -0.1560 -3.8476 -3.4547 36 1 1.4847 -4.5192 -3.6144 37 1 0.7184 -6.6392 -2.5823 38 1 -0.9226 -5.9683 -2.4222 39 1 1.5671 -7.2399 -4.7330 40 1 0.6650 -6.7955 -6.2019 41 1 1.4347 -5.5313 -5.2137 42 1 -0.4449 -8.4380 -4.0946 43 1 -1.9303 -7.5268 -3.7319 44 1 -2.5271 -9.5955 -5.3536 45 1 -4.3464 -11.9767 -6.8234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690981859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:47 Heat of formation + Delta-G solvation = -60.389391 kcal Electronic energy + Delta-G solvation = -25757.170819 eV Core-core repulsion = 21900.395224 eV Total energy + Delta-G solvation = -3856.775595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01662 -40.35585 -38.96067 -38.05474 -35.98741 -35.42999 -33.26948 -33.15406 -31.67842 -30.12563 -29.00183 -27.09689 -26.52750 -25.16634 -23.58578 -22.30729 -21.62440 -20.94801 -19.84448 -19.32725 -18.15734 -18.07228 -17.61913 -17.29514 -16.88660 -16.55256 -16.48178 -16.01488 -15.80383 -15.56473 -15.18852 -15.02138 -14.73744 -14.60580 -14.20248 -14.13224 -13.78008 -13.65803 -13.45313 -13.38325 -13.03045 -12.95940 -12.90364 -12.65730 -12.55250 -12.53020 -12.39675 -12.38300 -12.13436 -12.06937 -11.62884 -11.45567 -10.97025 -10.27944 -10.06647 -9.98040 -9.43126 -9.28882 -9.22671 -8.45555 -5.93600 0.10379 0.74344 1.09489 1.36941 1.42393 1.56121 1.65977 1.70186 2.07810 2.20166 2.33743 2.96879 3.21682 3.44320 3.80619 3.87014 3.98009 4.05816 4.13309 4.24937 4.27586 4.37694 4.48330 4.49521 4.53927 4.54809 4.64713 4.65129 4.69376 4.71592 4.74007 4.89819 4.98320 5.06918 5.17951 5.21649 5.42309 5.43430 5.48062 5.62593 5.86619 6.05947 6.18685 6.61836 6.63233 7.15350 7.33596 7.59023 8.15606 8.71982 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.001523 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.862318 B =18380.084909 C =18439.850564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.177 4.177 3 S 0.077 5.923 4 C -0.223 4.223 5 C -0.131 4.131 6 C -0.108 4.108 7 C -0.073 4.073 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.715 5.715 11 C 0.131 3.869 12 C 0.053 3.947 13 N -0.541 5.541 14 C 0.025 3.975 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.181 0.819 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.419 0.581 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.244 15.866 23.467 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.294 4.294 3 S 0.341 5.659 4 C -0.358 4.358 5 C -0.161 4.161 6 C -0.120 4.120 7 C -0.115 4.115 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.369 5.369 11 C 0.006 3.994 12 C -0.075 4.075 13 N -0.266 5.266 14 C -0.123 4.123 15 C -0.070 4.070 16 C 0.227 3.773 17 O -0.503 6.503 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.199 0.801 31 H 0.171 0.829 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.257 0.743 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.134 0.866 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.919 18.689 22.003 31.232 hybrid contribution 0.321 -2.802 -0.358 2.843 sum 12.240 15.887 21.645 29.508 Atomic orbital electron populations 1.20386 0.86989 1.03099 1.03646 1.24575 1.00776 0.95454 1.08595 1.84192 0.97811 1.10132 1.73761 1.25751 1.02350 0.96635 1.11050 1.20264 0.95835 0.97191 1.02831 1.18497 0.93161 0.95099 1.05245 1.20421 1.04961 0.93449 0.92636 1.21144 0.76090 0.80887 0.92070 1.90737 1.53798 1.53641 1.47851 1.45758 1.64790 1.17031 1.09283 1.21036 0.99566 0.95414 0.83370 1.22259 1.01831 0.94571 0.88805 1.61329 1.21291 1.31432 1.12501 1.22449 0.90027 1.00999 0.98815 1.21735 0.99510 0.91895 0.93870 1.20860 0.82549 0.82270 0.91659 1.90480 1.62059 1.48620 1.49117 1.41926 1.47027 1.21762 1.10497 1.19675 1.31102 1.07715 0.87627 0.90518 1.25984 0.96916 0.95050 1.03220 1.69667 1.39416 1.13261 1.33722 0.84903 0.78136 0.78114 0.77371 1.20032 1.19601 1.19631 0.88502 0.91437 0.91199 0.80135 0.82924 0.84932 0.85356 0.74317 0.93046 0.92878 0.91960 0.88190 0.94587 0.92641 0.91048 0.90890 0.86626 0.76924 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.78 71.24 0.70 -0.48 16 2 C -0.18 -3.17 6.50 24.59 0.16 -3.01 16 3 S 0.08 1.33 23.33 -56.49 -1.32 0.01 16 4 C -0.22 -3.55 11.23 66.72 0.75 -2.80 16 5 C -0.13 -2.15 9.96 21.22 0.21 -1.94 16 6 C -0.11 -1.83 4.29 -20.92 -0.09 -1.92 16 7 C -0.07 -0.83 5.34 29.10 0.16 -0.67 16 8 C 0.51 9.85 7.55 87.66 0.66 10.51 16 9 O -0.58 -17.78 16.03 -3.01 -0.05 -17.83 16 10 N -0.71 -10.79 5.56 -463.05 -2.57 -13.36 16 11 C 0.13 2.87 5.60 86.38 0.48 3.36 16 12 C 0.05 1.06 5.07 86.30 0.44 1.50 16 13 N -0.54 -16.64 4.50 -927.05 -4.17 -20.81 16 14 C 0.03 0.80 8.96 127.69 1.14 1.94 16 15 C 0.06 1.98 5.45 85.56 0.47 2.44 16 16 C 0.44 20.60 7.47 87.66 0.66 21.25 16 17 O -0.62 -34.12 13.91 -3.08 -0.04 -34.17 16 18 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 19 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 23 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H 0.10 0.90 8.14 -2.38 -0.02 0.89 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.06 7.19 -2.39 -0.02 1.05 16 30 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 31 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.13 0.72 8.11 -2.39 -0.02 0.70 16 33 H 0.13 0.79 7.52 -2.39 -0.02 0.78 16 34 H 0.42 2.91 8.47 -92.71 -0.79 2.13 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.35 6.55 -2.38 -0.02 1.33 16 37 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 38 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 2.26 5.82 -2.39 -0.01 2.24 16 41 H 0.07 2.10 6.47 -2.39 -0.02 2.09 16 42 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 43 H 0.12 3.16 7.93 -2.39 -0.02 3.14 16 44 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 45 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -78.28 389.23 -0.94 -79.22 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.49 Total: 29.37 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 7.01 Total: 12.05 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -8.08 Total: -113.65 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.09 Total: -52.00 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -78.28 -0.94 -79.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690981859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.830 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds