Wall clock time and date at job start Tue Mar 31 2020 22:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86792 * 120.00281 * 2 1 4 4 H 1.48494 * 109.47440 * 240.00141 * 3 2 1 5 5 H 1.48503 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47064 * 119.99842 * 3 2 1 7 7 C 1.38804 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99680 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.80992 * 99.99994 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46992 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00167 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99537 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99674 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47347 * 179.97438 * 14 13 11 16 16 H 1.09003 * 110.54096 * 307.61393 * 15 14 13 17 17 C 1.54268 * 110.48285 * 70.22318 * 15 14 13 18 18 C 1.53876 * 106.59607 * 142.29027 * 17 15 14 19 19 C 1.54268 * 106.59992 * 0.02562 * 18 17 15 20 20 H 1.08996 * 110.48777 * 95.06810 * 19 18 17 21 21 N 1.46905 * 110.48659 * 217.71308 * 19 18 17 22 22 C 1.46897 * 110.99799 * 269.76862 * 21 19 18 23 23 C 1.50698 * 109.46972 * 179.97438 * 22 21 19 24 24 C 1.41385 * 126.79791 * 94.71532 * 23 22 21 25 25 C 1.35450 * 103.98866 * 179.88862 * 24 23 22 26 26 O 1.34042 * 106.44121 * 0.36969 * 25 24 23 27 27 N 1.20922 * 111.57032 * 359.74547 * 26 25 24 28 28 C 1.54882 * 110.48812 * 185.00211 * 15 14 13 29 29 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47275 * 60.00316 * 10 9 7 31 31 H 1.09001 * 109.47345 * 299.99720 * 10 9 7 32 32 H 0.96998 * 120.00528 * 0.02562 * 13 11 10 33 33 H 1.09003 * 109.47080 * 60.00002 * 14 13 11 34 34 H 1.09001 * 109.46915 * 300.00093 * 14 13 11 35 35 H 1.08994 * 110.03288 * 23.00990 * 17 15 14 36 36 H 1.09000 * 110.07311 * 261.59314 * 17 15 14 37 37 H 1.08998 * 110.03805 * 240.71854 * 18 17 15 38 38 H 1.09000 * 110.07667 * 119.30450 * 18 17 15 39 39 H 1.00903 * 110.99951 * 33.73028 * 21 19 18 40 40 H 1.08990 * 109.47597 * 300.00487 * 22 21 19 41 41 H 1.09003 * 109.47146 * 60.00459 * 22 21 19 42 42 H 1.08004 * 128.00692 * 0.02562 * 24 23 22 43 43 H 1.07994 * 126.78079 * 180.09551 * 25 24 23 44 44 H 1.08994 * 110.76048 * 85.06728 * 28 15 14 45 45 H 1.09004 * 110.75771 * 321.69122 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0021 11 6 1.9871 -5.3028 -0.0017 12 8 0.7908 -5.5023 -0.0009 13 7 2.8439 -6.3432 -0.0022 14 6 2.3301 -7.7152 -0.0024 15 6 3.5021 -8.6987 -0.0036 16 1 4.1950 -8.4670 -0.8126 17 6 4.2309 -8.6717 1.3558 18 6 4.6412 -10.1225 1.6634 19 6 4.1480 -10.9804 0.4799 20 1 4.9453 -11.1170 -0.2506 21 7 3.6572 -12.2804 0.9566 22 6 4.7383 -13.2747 0.9799 23 6 4.1984 -14.5922 1.4736 24 6 3.7306 -15.6660 0.6817 25 6 3.3618 -16.6039 1.5867 26 8 3.6020 -16.0789 2.7964 27 7 4.0650 -14.9649 2.7137 28 6 2.9881 -10.1542 -0.1303 29 1 -0.4850 0.8401 -0.0004 30 1 3.1250 -3.7319 0.8874 31 1 3.1236 -3.7311 -0.8925 32 1 3.8007 -6.1836 -0.0025 33 1 1.7212 -7.8750 -0.8922 34 1 1.7218 -7.8754 0.8878 35 1 3.5609 -8.3008 2.1313 36 1 5.1160 -8.0386 1.2932 37 1 4.1703 -10.4557 2.5882 38 1 5.7254 -10.1944 1.7498 39 1 3.2262 -12.1933 1.8647 40 1 5.1388 -13.3998 -0.0260 41 1 5.5306 -12.9344 1.6467 42 1 3.6811 -15.7256 -0.3956 43 1 2.9509 -17.5800 1.3754 44 1 2.8336 -10.4198 -1.1761 45 1 2.0718 -10.2917 0.4438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691210510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:35 Heat of formation + Delta-G solvation = 12.317856 kcal Electronic energy + Delta-G solvation = -25201.281923 eV Core-core repulsion = 21347.659150 eV Total energy + Delta-G solvation = -3853.622772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.38119 -39.70047 -38.72786 -36.35801 -34.53590 -33.20421 -32.41639 -32.06242 -30.31909 -29.04516 -28.37313 -25.85796 -25.43268 -23.99972 -23.58755 -21.53097 -21.04216 -20.23686 -20.05121 -18.29625 -18.00433 -17.81423 -16.65828 -16.36340 -16.14531 -15.60242 -15.40103 -15.17554 -14.91191 -14.79306 -14.16384 -13.90608 -13.80536 -13.72387 -13.35820 -13.16015 -13.03385 -12.63024 -12.57848 -12.28177 -11.88376 -11.81000 -11.58588 -11.40632 -11.09131 -11.03930 -11.03123 -11.00994 -10.79069 -10.75431 -10.65126 -10.12090 -9.81112 -9.36658 -9.05194 -8.91484 -8.82887 -8.22315 -6.48568 -6.20334 -3.90893 1.04562 1.72576 2.81173 3.05810 3.13861 3.24175 3.28276 3.31950 3.52447 3.72272 3.90382 4.04614 4.21578 4.22761 4.23482 4.53978 4.68125 4.77163 4.82285 4.85279 5.02525 5.06783 5.09920 5.12688 5.14652 5.21241 5.23463 5.31906 5.34702 5.50747 5.53442 5.62688 5.67369 5.74629 5.76386 5.82668 5.91147 5.98633 6.12454 6.15666 6.50086 6.66663 6.80869 7.60230 7.75069 7.79294 8.36082 8.65450 9.24721 10.87051 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042675 B = 0.001400 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.966392 B =19999.597991 C =20222.765144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.130 3.870 15 C -0.105 4.105 16 H 0.082 0.918 17 C -0.118 4.118 18 C -0.153 4.153 19 C 0.084 3.916 20 H 0.086 0.914 21 N -0.677 5.677 22 C 0.137 3.863 23 C 0.018 3.982 24 C -0.218 4.218 25 C -0.062 4.062 26 O 0.100 5.900 27 N -0.363 5.363 28 C -0.101 4.101 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.347 0.653 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.172 0.828 43 H 0.217 0.783 44 H 0.074 0.926 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.824 -32.999 0.612 35.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.006 3.994 15 C -0.124 4.124 16 H 0.101 0.899 17 C -0.156 4.156 18 C -0.192 4.192 19 C -0.026 4.026 20 H 0.104 0.896 21 N -0.308 5.308 22 C 0.008 3.992 23 C -0.141 4.141 24 C -0.240 4.240 25 C -0.143 4.143 26 O 0.032 5.968 27 N -0.066 5.066 28 C -0.139 4.139 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.166 0.834 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.190 0.810 43 H 0.233 0.767 44 H 0.092 0.908 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.679 -32.854 1.184 34.566 hybrid contribution 2.856 1.342 -0.123 3.158 sum 13.535 -31.512 1.061 34.312 Atomic orbital electron populations 1.70011 1.05951 1.27550 1.46777 1.24986 0.95018 0.98994 0.94530 0.86227 0.79240 0.81268 0.78781 1.19947 1.20800 1.19961 1.22835 0.94872 0.91715 1.59066 0.91004 1.85397 1.04979 0.96278 1.96715 1.23531 1.06523 0.95514 1.04846 1.20304 0.86548 0.86307 0.75205 1.90702 1.15396 1.85638 1.47541 1.46003 1.09839 1.05572 1.77874 1.21306 0.95379 0.80389 1.02364 1.22232 0.97020 0.95036 0.98097 0.89943 1.22170 1.00390 0.95954 0.97135 1.22887 1.01137 0.96461 0.98736 1.22487 0.96933 0.87059 0.96094 0.89604 1.60550 1.29327 1.07326 1.33631 1.20216 0.92384 0.85542 1.01087 1.23548 1.02650 0.99058 0.88845 1.22745 1.05594 0.93356 1.02312 1.26059 1.02958 1.01688 0.83605 1.84845 1.59006 1.22075 1.30826 1.73862 1.14972 0.96430 1.21362 1.22422 0.98076 0.91909 1.01513 0.92135 0.89307 0.89276 0.76946 0.91570 0.91581 0.91104 0.91598 0.91639 0.91841 0.83363 0.88643 0.93254 0.81024 0.76665 0.90752 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 9.99 7.85 -10.98 -0.09 9.90 16 12 O -0.52 -11.98 15.86 5.56 0.09 -11.89 16 13 N -0.74 -9.76 5.45 -60.29 -0.33 -10.09 16 14 C 0.13 1.48 5.00 -4.04 -0.02 1.46 16 15 C -0.10 -0.82 2.89 -88.97 -0.26 -1.07 16 16 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.12 -0.89 6.23 -25.61 -0.16 -1.05 16 18 C -0.15 -1.01 6.50 -25.61 -0.17 -1.17 16 19 C 0.08 0.53 3.19 -66.03 -0.21 0.32 16 20 H 0.09 0.49 7.82 -51.93 -0.41 0.08 16 21 N -0.68 -4.66 6.35 -106.22 -0.67 -5.33 16 22 C 0.14 0.86 6.13 -4.98 -0.03 0.83 16 23 C 0.02 0.14 6.84 -82.10 -0.56 -0.43 16 24 C -0.22 -1.18 11.12 -39.38 -0.44 -1.61 16 25 C -0.06 -0.27 12.30 29.74 0.37 0.10 16 26 O 0.10 0.75 11.20 17.17 0.19 0.95 16 27 N -0.36 -3.32 12.07 33.42 0.40 -2.92 16 28 C -0.10 -0.73 6.00 -24.73 -0.15 -0.88 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 32 H 0.40 4.08 8.44 -40.82 -0.34 3.74 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.84 7.95 -51.93 -0.41 0.42 16 35 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.35 2.64 8.06 -39.29 -0.32 2.32 16 40 H 0.10 0.46 8.08 -51.93 -0.42 0.05 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.22 0.00 8.06 -52.49 -0.42 -0.43 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.63 8.06 -51.93 -0.42 0.22 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -35.94 391.78 -9.09 -45.03 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.88 Total: 0.90 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.29 Total: -9.56 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.13 Total: -43.91 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.28 Total: -10.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.94 -9.09 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691210510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.346 kcal (2) G-P(sol) polarization free energy of solvation -35.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds