Wall clock time and date at job start Tue Mar 31 2020 22:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86792 * 120.00281 * 2 1 4 4 H 1.48494 * 109.47440 * 240.00141 * 3 2 1 5 5 H 1.48503 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47064 * 119.99842 * 3 2 1 7 7 C 1.38804 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99680 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.80992 * 99.99994 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46992 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00167 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99537 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99674 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47347 * 179.97438 * 14 13 11 16 16 H 1.09003 * 110.54096 * 307.61393 * 15 14 13 17 17 C 1.54268 * 110.48285 * 70.22318 * 15 14 13 18 18 C 1.53876 * 106.59607 * 142.29027 * 17 15 14 19 19 C 1.54268 * 106.59992 * 0.02562 * 18 17 15 20 20 H 1.08996 * 110.48777 * 95.06810 * 19 18 17 21 21 N 1.46905 * 110.48659 * 217.71308 * 19 18 17 22 22 C 1.46897 * 110.99799 * 269.76862 * 21 19 18 23 23 C 1.50698 * 109.46972 * 179.97438 * 22 21 19 24 24 C 1.41385 * 126.79791 * 94.71532 * 23 22 21 25 25 C 1.35450 * 103.98866 * 179.88862 * 24 23 22 26 26 O 1.34042 * 106.44121 * 0.36969 * 25 24 23 27 27 N 1.20922 * 111.57032 * 359.74547 * 26 25 24 28 28 C 1.54882 * 110.48812 * 185.00211 * 15 14 13 29 29 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47275 * 60.00316 * 10 9 7 31 31 H 1.09001 * 109.47345 * 299.99720 * 10 9 7 32 32 H 0.96998 * 120.00528 * 0.02562 * 13 11 10 33 33 H 1.09003 * 109.47080 * 60.00002 * 14 13 11 34 34 H 1.09001 * 109.46915 * 300.00093 * 14 13 11 35 35 H 1.08994 * 110.03288 * 23.00990 * 17 15 14 36 36 H 1.09000 * 110.07311 * 261.59314 * 17 15 14 37 37 H 1.08998 * 110.03805 * 240.71854 * 18 17 15 38 38 H 1.09000 * 110.07667 * 119.30450 * 18 17 15 39 39 H 1.00903 * 110.99951 * 33.73028 * 21 19 18 40 40 H 1.08990 * 109.47597 * 300.00487 * 22 21 19 41 41 H 1.09003 * 109.47146 * 60.00459 * 22 21 19 42 42 H 1.08004 * 128.00692 * 0.02562 * 24 23 22 43 43 H 1.07994 * 126.78079 * 180.09551 * 25 24 23 44 44 H 1.08994 * 110.76048 * 85.06728 * 28 15 14 45 45 H 1.09004 * 110.75771 * 321.69122 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0021 11 6 1.9871 -5.3028 -0.0017 12 8 0.7908 -5.5023 -0.0009 13 7 2.8439 -6.3432 -0.0022 14 6 2.3301 -7.7152 -0.0024 15 6 3.5021 -8.6987 -0.0036 16 1 4.1950 -8.4670 -0.8126 17 6 4.2309 -8.6717 1.3558 18 6 4.6412 -10.1225 1.6634 19 6 4.1480 -10.9804 0.4799 20 1 4.9453 -11.1170 -0.2506 21 7 3.6572 -12.2804 0.9566 22 6 4.7383 -13.2747 0.9799 23 6 4.1984 -14.5922 1.4736 24 6 3.7306 -15.6660 0.6817 25 6 3.3618 -16.6039 1.5867 26 8 3.6020 -16.0789 2.7964 27 7 4.0650 -14.9649 2.7137 28 6 2.9881 -10.1542 -0.1303 29 1 -0.4850 0.8401 -0.0004 30 1 3.1250 -3.7319 0.8874 31 1 3.1236 -3.7311 -0.8925 32 1 3.8007 -6.1836 -0.0025 33 1 1.7212 -7.8750 -0.8922 34 1 1.7218 -7.8754 0.8878 35 1 3.5609 -8.3008 2.1313 36 1 5.1160 -8.0386 1.2932 37 1 4.1703 -10.4557 2.5882 38 1 5.7254 -10.1944 1.7498 39 1 3.2262 -12.1933 1.8647 40 1 5.1388 -13.3998 -0.0260 41 1 5.5306 -12.9344 1.6467 42 1 3.6811 -15.7256 -0.3956 43 1 2.9509 -17.5800 1.3754 44 1 2.8336 -10.4198 -1.1761 45 1 2.0718 -10.2917 0.4438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691210510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:34 Heat of formation + Delta-G solvation = -13.817625 kcal Electronic energy + Delta-G solvation = -25202.415242 eV Core-core repulsion = 21347.659150 eV Total energy + Delta-G solvation = -3854.756092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.86117 -40.78649 -39.72005 -37.03802 -35.48190 -34.58109 -33.93027 -32.53373 -31.52634 -29.89805 -29.19694 -27.67542 -26.45978 -24.81041 -24.03273 -22.04238 -21.91136 -21.17769 -20.87980 -19.78260 -18.73908 -18.51417 -17.78676 -17.44662 -17.13390 -16.87486 -16.52523 -16.24883 -15.89520 -15.85013 -15.56723 -14.87492 -14.62190 -14.49003 -14.41937 -14.30436 -13.90077 -13.71788 -13.43854 -13.17553 -13.16441 -12.86177 -12.83917 -12.65600 -12.40605 -12.13006 -12.04675 -11.82743 -11.73397 -11.62514 -11.41089 -11.14605 -11.12544 -10.92384 -10.54162 -10.27670 -10.09692 -9.42883 -8.66794 -8.34103 -6.12619 0.63732 1.27179 1.29548 1.44310 1.47454 1.57263 1.62408 2.26944 2.31623 2.49164 2.99957 3.07644 3.31275 3.36090 3.54947 3.64063 3.67411 3.96466 4.01809 4.18636 4.26058 4.29300 4.33993 4.43749 4.45125 4.48349 4.51099 4.56514 4.64520 4.68681 4.72081 4.81917 4.90367 4.92089 5.03020 5.13268 5.17484 5.20542 5.31586 5.41576 5.42069 5.51473 6.00439 6.19855 6.23490 6.52916 7.06904 7.26374 7.35460 8.74934 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042675 B = 0.001400 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.966392 B =19999.597991 C =20222.765144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.129 3.871 15 C -0.091 4.091 16 H 0.101 0.899 17 C -0.118 4.118 18 C -0.148 4.148 19 C 0.091 3.909 20 H 0.101 0.899 21 N -0.681 5.681 22 C 0.140 3.860 23 C 0.005 3.995 24 C -0.231 4.231 25 C -0.049 4.049 26 O 0.082 5.918 27 N -0.401 5.401 28 C -0.099 4.099 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.416 0.584 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.340 0.660 40 H 0.112 0.888 41 H 0.045 0.955 42 H 0.193 0.807 43 H 0.258 0.742 44 H 0.079 0.921 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.611 -33.947 -0.298 37.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.364 5.364 14 C 0.006 3.994 15 C -0.110 4.110 16 H 0.120 0.880 17 C -0.156 4.156 18 C -0.187 4.187 19 C -0.019 4.019 20 H 0.119 0.881 21 N -0.312 5.312 22 C 0.010 3.990 23 C -0.154 4.154 24 C -0.253 4.253 25 C -0.130 4.130 26 O 0.017 5.983 27 N -0.108 5.108 28 C -0.138 4.138 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.253 0.747 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.063 0.937 42 H 0.210 0.790 43 H 0.274 0.726 44 H 0.098 0.902 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.524 -33.854 0.275 36.456 hybrid contribution 2.001 1.454 0.150 2.478 sum 15.525 -32.400 0.425 35.930 Atomic orbital electron populations 1.70183 1.08010 1.28674 1.47925 1.26132 0.95949 1.03322 0.93678 0.85000 0.77801 0.75659 0.79508 1.18585 1.20403 1.18682 1.23184 0.95367 0.91998 1.59035 0.89859 1.85595 1.10709 0.99307 1.97063 1.23374 1.03490 0.94368 1.06809 1.20099 0.86254 0.86792 0.75167 1.90691 1.17564 1.86173 1.50336 1.45746 1.10222 1.05132 1.75292 1.21434 0.96879 0.79837 1.01278 1.22148 0.95713 0.94118 0.99038 0.88039 1.22158 1.00392 0.96777 0.96237 1.22837 1.01627 0.95772 0.98487 1.22450 0.96679 0.86621 0.96122 0.88085 1.60552 1.29709 1.07719 1.33214 1.20275 0.91921 0.84951 1.01826 1.23917 1.02538 0.99969 0.88930 1.23091 1.05837 0.92924 1.03442 1.26878 1.01152 1.02745 0.82203 1.84791 1.59253 1.21863 1.32369 1.73859 1.16819 0.97472 1.22603 1.22394 0.97955 0.91675 1.01737 0.91997 0.87255 0.87099 0.74698 0.92446 0.93046 0.92794 0.90378 0.92549 0.90866 0.84137 0.86972 0.93666 0.79001 0.72593 0.90187 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.45 9.50 67.96 0.65 -30.80 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 10 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 11 C 0.53 19.77 7.85 87.66 0.69 20.46 16 12 O -0.57 -26.96 15.86 -3.03 -0.05 -27.01 16 13 N -0.71 -17.62 5.45 -463.04 -2.52 -20.14 16 14 C 0.13 2.85 5.00 86.38 0.43 3.28 16 15 C -0.09 -1.23 2.89 -9.72 -0.03 -1.26 16 16 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 17 C -0.12 -1.54 6.23 31.32 0.20 -1.34 16 18 C -0.15 -1.70 6.50 31.32 0.20 -1.50 16 19 C 0.09 0.98 3.19 46.00 0.15 1.13 16 20 H 0.10 0.83 7.82 -2.39 -0.02 0.82 16 21 N -0.68 -8.67 6.35 -489.98 -3.11 -11.78 16 22 C 0.14 1.58 6.13 85.56 0.52 2.11 16 23 C 0.01 0.07 6.84 43.58 0.30 0.37 16 24 C -0.23 -2.12 11.12 22.40 0.25 -1.87 16 25 C -0.05 -0.34 12.30 67.18 0.83 0.48 16 26 O 0.08 1.21 11.20 71.62 0.80 2.01 16 27 N -0.40 -7.39 12.07 -49.56 -0.60 -7.98 16 28 C -0.10 -1.29 6.00 31.89 0.19 -1.10 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 31 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.42 7.29 8.44 -92.71 -0.78 6.51 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.32 7.95 -2.39 -0.02 1.30 16 35 H 0.05 0.90 7.71 -2.39 -0.02 0.89 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.77 7.52 -2.39 -0.02 0.75 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.34 5.15 8.06 -89.69 -0.72 4.42 16 40 H 0.11 0.85 8.08 -2.39 -0.02 0.83 16 41 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.26 -0.81 8.06 -2.91 -0.02 -0.83 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.02 8.06 -2.38 -0.02 1.00 16 Total: -1.00 -81.57 391.78 0.46 -81.11 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -0.49 Total: 17.48 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.28 Total: -13.46 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -5.94 Total: -95.97 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: 0.75 Total: -25.00 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -81.57 0.46 -81.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691210510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.291 kcal (2) G-P(sol) polarization free energy of solvation -81.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds