Wall clock time and date at job start Tue Mar 31 2020 22:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48494 * 109.47461 * 270.00242 * 3 2 1 5 5 H 1.48502 * 109.47131 * 30.00587 * 3 2 1 6 6 H 1.48499 * 109.47039 * 149.99878 * 3 2 1 7 7 C 1.38790 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99975 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.80992 * 100.00127 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47044 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00156 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.47156 * 120.68354 * 180.02562 * 13 11 10 15 15 C 1.53886 * 108.04394 * 132.35906 * 14 13 11 16 16 H 1.08997 * 112.12413 * 182.01728 * 15 14 13 17 17 C 1.54550 * 107.81087 * 306.01012 * 15 14 13 18 18 C 1.54253 * 104.93997 * 88.96918 * 17 15 14 19 19 C 1.54544 * 104.94125 * 359.97438 * 18 17 15 20 20 H 1.09004 * 112.20982 * 146.48134 * 19 18 17 21 21 C 1.47152 * 120.68261 * 359.72210 * 13 11 10 22 22 N 1.48733 * 107.17526 * 58.43780 * 15 14 13 23 23 C 1.46899 * 111.00067 * 167.47397 * 22 15 14 24 24 H 1.08999 * 110.43478 * 56.09491 * 23 22 15 25 25 C 1.54627 * 110.48430 * 178.77416 * 23 22 15 26 26 C 1.54483 * 101.76318 * 143.47776 * 25 23 22 27 27 N 1.46755 * 105.47386 * 334.58332 * 26 25 23 28 28 C 1.34421 * 111.30346 * 17.01813 * 27 26 25 29 29 O 1.21277 * 124.94450 * 179.62878 * 28 27 26 30 30 H 0.97003 * 119.99740 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47449 * 60.00182 * 10 9 7 32 32 H 1.08998 * 109.47358 * 299.99877 * 10 9 7 33 33 H 1.09002 * 109.74503 * 252.00199 * 14 13 11 34 34 H 1.09001 * 109.74446 * 12.67183 * 14 13 11 35 35 H 1.09003 * 110.34380 * 207.83341 * 17 15 14 36 36 H 1.09001 * 110.34489 * 329.99299 * 17 15 14 37 37 H 1.09006 * 110.34513 * 118.86525 * 18 17 15 38 38 H 1.09000 * 110.34429 * 241.02497 * 18 17 15 39 39 H 1.08997 * 109.74513 * 347.27215 * 21 13 11 40 40 H 1.08998 * 109.74793 * 108.00190 * 21 13 11 41 41 H 1.09002 * 110.97382 * 261.59743 * 25 23 22 42 42 H 1.08998 * 110.97384 * 25.35797 * 25 23 22 43 43 H 1.09005 * 110.24537 * 215.58048 * 26 25 23 44 44 H 1.09005 * 110.31796 * 93.62675 * 26 25 23 45 45 H 0.97001 * 124.34822 * 197.03250 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0022 14 6 2.3445 -7.7273 -0.0024 15 6 3.1097 -8.5100 -1.0840 16 1 2.7653 -9.5410 -1.1655 17 6 2.9662 -7.7393 -2.4159 18 6 4.1492 -6.7495 -2.4320 19 6 4.9035 -7.0085 -1.1082 20 1 5.9788 -6.8630 -1.2114 21 6 4.2983 -6.1183 -0.0093 22 7 4.5559 -8.4248 -0.7474 23 6 5.3389 -9.3790 -1.5440 24 1 5.1702 -9.2149 -2.6082 25 6 6.8432 -9.2590 -1.2069 26 6 7.3038 -10.7310 -1.2939 27 7 6.1044 -11.5330 -1.0262 28 6 4.9860 -10.8003 -1.1649 29 8 3.8582 -11.2178 -1.0081 30 1 -0.4850 0.8401 0.0004 31 1 3.1251 -3.7318 0.8875 32 1 3.1237 -3.7310 -0.8925 33 1 2.5179 -8.1815 0.9732 34 1 1.2779 -7.7338 -0.2271 35 1 3.0346 -8.4255 -3.2601 36 1 2.0189 -7.2007 -2.4419 37 1 4.7989 -6.9494 -3.2842 38 1 3.7841 -5.7231 -2.4671 39 1 4.5083 -5.0738 -0.2395 40 1 4.7150 -6.3723 0.9653 41 1 7.3603 -8.6442 -1.9437 42 1 6.9874 -8.8639 -0.2013 43 1 8.0676 -10.9322 -0.5426 44 1 7.6888 -10.9488 -2.2901 45 1 6.1170 -12.4713 -0.7805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691808522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:25 Heat of formation + Delta-G solvation = -41.983230 kcal Electronic energy + Delta-G solvation = -28110.332619 eV Core-core repulsion = 24254.355175 eV Total energy + Delta-G solvation = -3855.977444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52514 -40.06071 -38.20232 -36.75021 -34.46185 -32.41704 -32.19207 -31.71865 -29.72159 -29.33567 -27.46796 -25.60480 -25.31610 -24.68315 -22.50400 -20.91127 -20.43889 -20.23913 -18.71149 -17.86797 -17.68841 -17.07857 -16.67542 -16.13554 -15.56241 -15.31074 -15.02637 -14.79502 -14.39787 -14.35838 -14.13755 -14.04451 -13.86678 -13.51578 -13.12837 -12.98224 -12.84971 -12.75294 -12.58082 -12.44274 -11.89707 -11.73431 -11.52751 -11.47919 -11.07066 -11.03218 -10.99127 -10.96679 -10.73562 -10.56649 -9.98741 -9.78832 -9.56127 -9.26502 -9.05862 -9.01910 -8.36412 -8.19910 -6.48244 -6.20388 -3.90751 2.18293 2.87083 2.98786 3.12603 3.22538 3.26846 3.30845 3.58294 3.64709 3.82345 4.02299 4.21345 4.38182 4.52998 4.55525 4.57927 4.72548 4.89733 4.92270 4.99639 5.01847 5.10678 5.14593 5.22186 5.27736 5.33516 5.43248 5.52118 5.56391 5.68501 5.74879 5.78244 5.81478 5.89296 5.95444 6.05166 6.09352 6.14263 6.30403 6.48449 6.56695 6.63049 6.76570 7.60150 7.66510 7.86903 8.36101 8.63894 9.24742 10.86997 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002572 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.830383 B =10881.889032 C =11530.628548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.149 4.149 11 C 0.534 3.466 12 O -0.518 6.518 13 N -0.615 5.615 14 C 0.131 3.869 15 C 0.037 3.963 16 H 0.128 0.872 17 C -0.145 4.145 18 C -0.143 4.143 19 C 0.046 3.954 20 H 0.105 0.895 21 C 0.124 3.876 22 N -0.481 5.481 23 C 0.036 3.964 24 H 0.084 0.916 25 C -0.127 4.127 26 C 0.103 3.897 27 N -0.732 5.732 28 C 0.532 3.468 29 O -0.521 6.521 30 H 0.268 0.732 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.531 -21.619 -4.515 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.682 4.682 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.300 4.300 11 C 0.322 3.678 12 O -0.393 6.393 13 N -0.352 5.352 14 C 0.007 3.993 15 C -0.072 4.072 16 H 0.146 0.854 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.063 4.063 20 H 0.123 0.877 21 C 0.000 4.000 22 N -0.205 5.205 23 C -0.077 4.077 24 H 0.101 0.899 25 C -0.165 4.165 26 C -0.022 4.022 27 N -0.389 5.389 28 C 0.317 3.683 29 O -0.396 6.396 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 17.089 -22.039 -3.865 28.154 hybrid contribution 2.094 1.029 -0.880 2.493 sum 19.183 -21.010 -4.744 28.842 Atomic orbital electron populations 1.70026 1.05945 1.27414 1.46885 1.24992 0.95021 0.99009 0.94598 0.86176 0.79420 0.81639 0.78306 1.20311 1.20769 1.19696 1.22852 0.94849 0.91674 1.58867 0.90994 1.85434 1.05049 0.96292 1.96671 1.23546 1.06378 0.95571 1.04506 1.20293 0.86233 0.86119 0.75172 1.90693 1.15175 1.85220 1.48177 1.48123 1.06089 1.05798 1.75164 1.21682 0.98981 0.80383 0.98204 1.23835 0.88066 1.01570 0.93743 0.85427 1.22815 0.99921 0.97863 0.97777 1.22756 0.97031 1.01233 0.97205 1.23820 0.99820 0.88444 0.94229 0.87726 1.21856 0.80253 0.99497 0.98385 1.66169 1.03450 1.02013 1.48881 1.22398 0.95068 0.91850 0.98344 0.89857 1.22728 0.93265 0.95945 1.04569 1.22059 0.87754 0.90642 1.01734 1.46111 1.07324 1.13872 1.71551 1.20587 0.84289 0.88122 0.75295 1.90694 1.21641 1.76479 1.50796 0.92206 0.89356 0.89496 0.91289 0.88747 0.92047 0.90287 0.91766 0.90311 0.89127 0.90533 0.89150 0.88552 0.89966 0.90992 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.53 -15.15 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.03 4.53 36.01 0.16 -2.86 16 11 C 0.53 10.27 7.72 -10.98 -0.08 10.19 16 12 O -0.52 -12.06 15.32 5.56 0.09 -11.98 16 13 N -0.62 -8.99 2.24 -171.58 -0.39 -9.38 16 14 C 0.13 1.81 5.89 -3.22 -0.02 1.79 16 15 C 0.04 0.43 3.41 -65.42 -0.22 0.21 16 16 H 0.13 1.68 5.44 -51.93 -0.28 1.39 16 17 C -0.14 -1.67 5.55 -25.26 -0.14 -1.81 16 18 C -0.14 -1.44 5.58 -25.27 -0.14 -1.58 16 19 C 0.05 0.40 3.50 -64.60 -0.23 0.18 16 20 H 0.10 0.66 7.18 -51.93 -0.37 0.29 16 21 C 0.12 1.37 5.86 -3.25 -0.02 1.35 16 22 N -0.48 -4.66 4.82 -203.78 -0.98 -5.64 16 23 C 0.04 0.28 2.34 -67.72 -0.16 0.12 16 24 H 0.08 0.64 7.15 -51.93 -0.37 0.27 16 25 C -0.13 -0.55 5.64 -25.10 -0.14 -0.69 16 26 C 0.10 0.34 7.78 -3.12 -0.02 0.31 16 27 N -0.73 -4.47 6.24 -59.20 -0.37 -4.84 16 28 C 0.53 5.15 8.01 -10.86 -0.09 5.07 16 29 O -0.52 -7.12 15.37 5.56 0.09 -7.03 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.09 1.67 8.06 -51.92 -0.42 1.25 16 32 H 0.09 1.61 7.59 -51.92 -0.39 1.21 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.47 7.10 -51.93 -0.37 1.10 16 35 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.08 1.10 7.84 -51.93 -0.41 0.69 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.94 7.89 -51.93 -0.41 0.53 16 39 H 0.09 0.98 6.07 -51.93 -0.32 0.66 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.10 0.47 8.09 -51.93 -0.42 0.04 16 43 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.41 1.97 8.96 -40.82 -0.37 1.61 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -36.36 363.92 -10.11 -46.47 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.63 Total: 0.57 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.90 Total: -0.59 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -1.00 Total: -45.34 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.01 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.36 -10.11 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691808522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.489 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds