Wall clock time and date at job start Tue Mar 31 2020 22:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48494 * 109.47461 * 270.00242 * 3 2 1 5 5 H 1.48502 * 109.47131 * 30.00587 * 3 2 1 6 6 H 1.48499 * 109.47039 * 149.99878 * 3 2 1 7 7 C 1.38790 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99975 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.80992 * 100.00127 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47044 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00156 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.47156 * 120.68354 * 180.02562 * 13 11 10 15 15 C 1.53886 * 108.04394 * 132.35906 * 14 13 11 16 16 H 1.08997 * 112.12413 * 182.01728 * 15 14 13 17 17 C 1.54550 * 107.81087 * 306.01012 * 15 14 13 18 18 C 1.54253 * 104.93997 * 88.96918 * 17 15 14 19 19 C 1.54544 * 104.94125 * 359.97438 * 18 17 15 20 20 H 1.09004 * 112.20982 * 146.48134 * 19 18 17 21 21 C 1.47152 * 120.68261 * 359.72210 * 13 11 10 22 22 N 1.48733 * 107.17526 * 58.43780 * 15 14 13 23 23 C 1.46899 * 111.00067 * 167.47397 * 22 15 14 24 24 H 1.08999 * 110.43478 * 56.09491 * 23 22 15 25 25 C 1.54627 * 110.48430 * 178.77416 * 23 22 15 26 26 C 1.54483 * 101.76318 * 143.47776 * 25 23 22 27 27 N 1.46755 * 105.47386 * 334.58332 * 26 25 23 28 28 C 1.34421 * 111.30346 * 17.01813 * 27 26 25 29 29 O 1.21277 * 124.94450 * 179.62878 * 28 27 26 30 30 H 0.97003 * 119.99740 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47449 * 60.00182 * 10 9 7 32 32 H 1.08998 * 109.47358 * 299.99877 * 10 9 7 33 33 H 1.09002 * 109.74503 * 252.00199 * 14 13 11 34 34 H 1.09001 * 109.74446 * 12.67183 * 14 13 11 35 35 H 1.09003 * 110.34380 * 207.83341 * 17 15 14 36 36 H 1.09001 * 110.34489 * 329.99299 * 17 15 14 37 37 H 1.09006 * 110.34513 * 118.86525 * 18 17 15 38 38 H 1.09000 * 110.34429 * 241.02497 * 18 17 15 39 39 H 1.08997 * 109.74513 * 347.27215 * 21 13 11 40 40 H 1.08998 * 109.74793 * 108.00190 * 21 13 11 41 41 H 1.09002 * 110.97382 * 261.59743 * 25 23 22 42 42 H 1.08998 * 110.97384 * 25.35797 * 25 23 22 43 43 H 1.09005 * 110.24537 * 215.58048 * 26 25 23 44 44 H 1.09005 * 110.31796 * 93.62675 * 26 25 23 45 45 H 0.97001 * 124.34822 * 197.03250 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0022 14 6 2.3445 -7.7273 -0.0024 15 6 3.1097 -8.5100 -1.0840 16 1 2.7653 -9.5410 -1.1655 17 6 2.9662 -7.7393 -2.4159 18 6 4.1492 -6.7495 -2.4320 19 6 4.9035 -7.0085 -1.1082 20 1 5.9788 -6.8630 -1.2114 21 6 4.2983 -6.1183 -0.0093 22 7 4.5559 -8.4248 -0.7474 23 6 5.3389 -9.3790 -1.5440 24 1 5.1702 -9.2149 -2.6082 25 6 6.8432 -9.2590 -1.2069 26 6 7.3038 -10.7310 -1.2939 27 7 6.1044 -11.5330 -1.0262 28 6 4.9860 -10.8003 -1.1649 29 8 3.8582 -11.2178 -1.0081 30 1 -0.4850 0.8401 0.0004 31 1 3.1251 -3.7318 0.8875 32 1 3.1237 -3.7310 -0.8925 33 1 2.5179 -8.1815 0.9732 34 1 1.2779 -7.7338 -0.2271 35 1 3.0346 -8.4255 -3.2601 36 1 2.0189 -7.2007 -2.4419 37 1 4.7989 -6.9494 -3.2842 38 1 3.7841 -5.7231 -2.4671 39 1 4.5083 -5.0738 -0.2395 40 1 4.7150 -6.3723 0.9653 41 1 7.3603 -8.6442 -1.9437 42 1 6.9874 -8.8639 -0.2013 43 1 8.0676 -10.9322 -0.5426 44 1 7.6888 -10.9488 -2.2901 45 1 6.1170 -12.4713 -0.7805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691808522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:24 Heat of formation + Delta-G solvation = -70.383747 kcal Electronic energy + Delta-G solvation = -28111.564158 eV Core-core repulsion = 24254.355175 eV Total energy + Delta-G solvation = -3857.208983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36899 -40.96597 -39.48301 -37.40571 -35.65116 -34.56764 -33.07745 -32.58667 -30.85100 -30.26300 -28.29905 -27.63990 -26.31849 -25.69962 -22.97654 -21.94715 -21.27534 -21.07669 -20.01362 -19.39455 -18.41720 -18.20834 -17.62415 -17.22454 -16.88018 -16.79627 -16.32327 -15.85425 -15.72753 -15.52093 -15.10339 -14.90981 -14.60397 -14.55071 -14.41556 -14.23289 -13.95126 -13.65258 -13.55097 -13.34544 -13.14640 -13.07774 -12.87804 -12.61772 -12.52950 -12.33144 -12.06809 -11.90820 -11.89262 -11.68294 -11.45654 -11.12681 -10.95706 -10.62560 -10.23810 -10.05024 -9.90434 -9.50035 -8.66282 -8.32839 -6.11491 1.26508 1.44167 1.46822 1.49866 1.57900 1.60529 2.10001 2.28989 2.37838 2.87521 3.01396 3.24932 3.29173 3.51296 3.62511 3.72401 3.84952 3.87232 4.00194 4.15198 4.18387 4.21204 4.26077 4.34322 4.40755 4.46598 4.49405 4.61765 4.69097 4.75993 4.81387 4.86008 4.88818 4.95977 5.04630 5.07389 5.21601 5.23529 5.43306 5.48148 5.63899 5.82983 5.97204 6.04944 6.21482 6.34610 7.08177 7.16124 7.26448 8.76462 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002572 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.830383 B =10881.889032 C =11530.628548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.541 4.541 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.119 4.119 11 C 0.532 3.468 12 O -0.571 6.571 13 N -0.599 5.599 14 C 0.131 3.869 15 C 0.047 3.953 16 H 0.114 0.886 17 C -0.144 4.144 18 C -0.141 4.141 19 C 0.058 3.942 20 H 0.149 0.851 21 C 0.112 3.888 22 N -0.483 5.483 23 C 0.035 3.965 24 H 0.089 0.911 25 C -0.119 4.119 26 C 0.100 3.900 27 N -0.723 5.723 28 C 0.517 3.483 29 O -0.575 6.575 30 H 0.270 0.730 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.852 -21.516 -5.074 33.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.689 4.689 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.270 4.270 11 C 0.320 3.680 12 O -0.450 6.450 13 N -0.333 5.333 14 C 0.008 3.992 15 C -0.063 4.063 16 H 0.132 0.868 17 C -0.183 4.183 18 C -0.180 4.180 19 C -0.050 4.050 20 H 0.166 0.834 21 C -0.010 4.010 22 N -0.207 5.207 23 C -0.077 4.077 24 H 0.107 0.893 25 C -0.156 4.156 26 C -0.023 4.023 27 N -0.378 5.378 28 C 0.303 3.697 29 O -0.455 6.455 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 22.524 -21.981 -4.426 31.781 hybrid contribution 0.514 0.793 -0.704 1.179 sum 23.038 -21.188 -5.130 31.717 Atomic orbital electron populations 1.70205 1.08085 1.28553 1.48160 1.26166 0.95959 1.03434 0.93789 0.84929 0.78249 0.75853 0.78801 1.19261 1.20548 1.17892 1.23185 0.95363 0.91708 1.58667 0.89653 1.85689 1.10835 0.99461 1.97017 1.23337 1.03270 0.93982 1.06401 1.20185 0.85944 0.86693 0.75215 1.90676 1.17474 1.85823 1.51065 1.48085 1.07494 1.04875 1.72863 1.21674 0.98046 0.80241 0.99248 1.23552 0.89731 1.00168 0.92812 0.86831 1.22773 0.99279 0.98239 0.98057 1.22766 0.96680 0.99369 0.99156 1.23882 1.01739 0.87182 0.92238 0.83377 1.22271 0.77517 1.00846 1.00411 1.66100 1.01899 1.03019 1.49673 1.22516 0.97035 0.89970 0.98210 0.89346 1.22821 0.90227 0.97091 1.05499 1.22348 0.86759 0.89507 1.03706 1.46218 1.07514 1.14298 1.69758 1.21077 0.84232 0.89387 0.75030 1.90668 1.23842 1.77562 1.53396 0.92082 0.87395 0.87212 0.91082 0.91551 0.91078 0.93734 0.88960 0.92228 0.88293 0.88872 0.86191 0.88487 0.87785 0.88917 0.74493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.62 5.49 84.85 0.47 1.09 16 3 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.54 -30.78 9.50 67.95 0.65 -30.14 16 8 H 0.09 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 10 C -0.12 -4.79 4.53 71.24 0.32 -4.47 16 11 C 0.53 21.01 7.72 87.66 0.68 21.68 16 12 O -0.57 -28.34 15.32 -3.04 -0.05 -28.39 16 13 N -0.60 -17.43 2.24 -815.15 -1.83 -19.26 16 14 C 0.13 3.80 5.89 86.55 0.51 4.31 16 15 C 0.05 1.11 3.41 45.39 0.15 1.27 16 16 H 0.11 3.14 5.44 -2.39 -0.01 3.13 16 17 C -0.14 -3.32 5.55 31.55 0.18 -3.15 16 18 C -0.14 -2.47 5.58 31.54 0.18 -2.30 16 19 C 0.06 0.81 3.50 45.07 0.16 0.96 16 20 H 0.15 0.92 7.18 -2.38 -0.02 0.90 16 21 C 0.11 2.15 5.86 86.53 0.51 2.66 16 22 N -0.48 -8.20 4.82 -798.62 -3.85 -12.05 16 23 C 0.03 0.43 2.34 44.91 0.11 0.54 16 24 H 0.09 1.04 7.15 -2.39 -0.02 1.03 16 25 C -0.12 -0.41 5.64 31.65 0.18 -0.23 16 26 C 0.10 0.20 7.78 86.83 0.68 0.87 16 27 N -0.72 -7.02 6.24 -459.81 -2.87 -9.89 16 28 C 0.52 9.31 8.01 87.90 0.70 10.02 16 29 O -0.58 -16.07 15.37 -3.02 -0.05 -16.11 16 30 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.11 3.92 8.06 -2.39 -0.02 3.90 16 32 H 0.11 3.91 7.59 -2.40 -0.02 3.89 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.29 7.10 -2.39 -0.02 2.27 16 35 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.04 1.33 7.84 -2.39 -0.02 1.31 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.06 1.31 7.89 -2.39 -0.02 1.29 16 39 H 0.10 1.79 6.07 -2.39 -0.01 1.77 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.10 0.41 8.09 -2.39 -0.02 0.39 16 43 H 0.10 -0.16 8.14 -2.38 -0.02 -0.18 16 44 H 0.09 -0.11 8.14 -2.38 -0.02 -0.13 16 45 H 0.42 3.22 8.96 -92.71 -0.83 2.39 16 Total: -1.00 -85.77 363.92 -1.84 -87.61 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.19 Total: 15.98 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.46 Total: 3.11 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -8.26 Total: -97.50 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.09 Total: -44.50 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -85.77 -1.84 -87.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691808522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.230 kcal (2) G-P(sol) polarization free energy of solvation -85.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds