Wall clock time and date at job start Tue Mar 31 2020 22:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99897 * 2 1 4 4 H 1.48497 * 109.47180 * 270.00135 * 3 2 1 5 5 H 1.48496 * 109.47360 * 30.00248 * 3 2 1 6 6 H 1.48504 * 109.47127 * 150.00372 * 3 2 1 7 7 C 1.38805 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99639 * 359.97438 * 7 2 1 9 9 S 1.76197 * 119.99788 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00153 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99431 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00040 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99870 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47316 * 35.00218 * 14 13 11 16 16 C 1.52998 * 109.47075 * 155.00162 * 14 13 11 17 17 C 1.53002 * 109.47225 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47180 * 299.99682 * 17 16 14 19 19 H 1.09002 * 109.47106 * 300.00411 * 18 17 16 20 20 N 1.46900 * 109.47290 * 179.97438 * 18 17 16 21 21 C 1.46891 * 110.99804 * 155.00203 * 20 18 17 22 22 C 1.50698 * 109.47164 * 180.02562 * 21 20 18 23 23 C 1.41384 * 126.80687 * 94.99982 * 22 21 20 24 24 C 1.35448 * 103.98528 * 180.20620 * 23 22 21 25 25 O 1.34034 * 106.44971 * 359.65054 * 24 23 22 26 26 N 1.20926 * 111.56615 * 0.38038 * 25 24 23 27 27 C 1.52998 * 109.46781 * 60.00046 * 18 17 16 28 28 C 1.53002 * 109.47225 * 299.99926 * 27 18 17 29 29 H 0.97001 * 120.00315 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46954 * 59.99873 * 10 9 7 31 31 H 1.08996 * 109.47036 * 300.00316 * 10 9 7 32 32 H 0.97001 * 120.00211 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47350 * 60.00267 * 16 14 13 34 34 H 1.09005 * 109.47207 * 300.00137 * 16 14 13 35 35 H 1.09004 * 109.47094 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47437 * 59.99891 * 17 16 14 37 37 H 1.00903 * 110.99768 * 31.04736 * 20 18 17 38 38 H 1.09001 * 109.47669 * 60.00412 * 21 20 18 39 39 H 1.09003 * 109.47465 * 299.99934 * 21 20 18 40 40 H 1.08002 * 128.00125 * 359.93933 * 23 22 21 41 41 H 1.08001 * 126.77311 * 179.73996 * 24 23 22 42 42 H 1.09000 * 109.47350 * 59.99898 * 27 18 17 43 43 H 1.08996 * 109.47288 * 179.97438 * 27 18 17 44 44 H 1.09002 * 109.47437 * 300.00109 * 28 27 18 45 45 H 1.09004 * 109.47094 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2325 -0.0021 12 8 6.3440 -2.2962 -0.0025 13 7 6.0457 -4.4947 -0.0026 14 6 7.4907 -4.7357 -0.0043 15 1 7.9883 -3.9652 0.5846 16 6 7.7793 -6.1092 0.6049 17 6 9.2885 -6.3607 0.6038 18 6 9.8112 -6.3205 -0.8336 19 1 9.3139 -7.0910 -1.4228 20 7 11.2603 -6.5613 -0.8347 21 6 11.7016 -7.1104 -2.1237 22 6 13.1899 -7.3445 -2.0869 23 6 13.8494 -8.5551 -1.7731 24 6 15.1645 -8.2470 -1.8741 25 8 15.2258 -6.9556 -2.2278 26 7 14.1229 -6.4722 -2.3381 27 6 9.5225 -4.9470 -1.4429 28 6 8.0133 -4.6955 -1.4417 29 1 -0.4851 0.8400 0.0004 30 1 3.6433 -3.4318 -0.8907 31 1 3.6440 -3.4313 0.8892 32 1 5.4291 -5.2435 -0.0026 33 1 7.2818 -6.8797 0.0161 34 1 7.4073 -6.1377 1.6292 35 1 9.4941 -7.3394 1.0374 36 1 9.7858 -5.5901 1.1929 37 1 11.5266 -7.1674 -0.0732 38 1 11.4641 -6.4048 -2.9198 39 1 11.1902 -8.0547 -2.3107 40 1 13.4070 -9.5043 -1.5093 41 1 15.9991 -8.9113 -1.7045 42 1 10.0197 -4.1764 -0.8538 43 1 9.8952 -4.9181 -2.4668 44 1 7.5160 -5.4661 -2.0309 45 1 7.8078 -3.7168 -1.8754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698706108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:18 Heat of formation + Delta-G solvation = 12.035023 kcal Electronic energy + Delta-G solvation = -25769.860293 eV Core-core repulsion = 21916.225256 eV Total energy + Delta-G solvation = -3853.635037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.36270 -40.00430 -38.57620 -36.35074 -34.45828 -32.88766 -32.42930 -32.03723 -31.11105 -29.94982 -28.12233 -25.81128 -25.53945 -23.54555 -23.16356 -21.96052 -21.40186 -20.41715 -20.06545 -18.24676 -17.95939 -17.83986 -16.63895 -16.39910 -16.24284 -15.48092 -15.31905 -15.00018 -14.96650 -14.73199 -14.23858 -14.05286 -13.95528 -13.70471 -13.44819 -13.18425 -12.79388 -12.67604 -12.57713 -12.43520 -12.12121 -11.77347 -11.58227 -11.49421 -11.36534 -11.25074 -10.99948 -10.76611 -10.66809 -10.52846 -10.46628 -10.09650 -9.84402 -9.46907 -9.00489 -8.95403 -8.89182 -8.48737 -6.90616 -6.28260 -3.99782 1.07369 1.72867 2.77923 2.82824 2.99968 3.30581 3.34932 3.51800 3.56463 3.67656 3.81169 4.13001 4.34157 4.34728 4.39026 4.65316 4.72799 4.74852 4.81500 4.87001 4.91035 4.96110 5.08288 5.10944 5.13974 5.18129 5.22172 5.23823 5.32125 5.45917 5.52128 5.55385 5.67128 5.76731 5.78694 5.90363 5.97266 6.02488 6.12710 6.18922 6.54033 6.62167 6.87332 7.65185 7.85961 7.94780 8.42118 8.52973 9.18074 10.80960 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033712 B = 0.001636 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.355114 B =17107.211592 C =17622.591643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.147 3.853 15 H 0.089 0.911 16 C -0.122 4.122 17 C -0.116 4.116 18 C 0.089 3.911 19 H 0.048 0.952 20 N -0.680 5.680 21 C 0.137 3.863 22 C 0.016 3.984 23 C -0.234 4.234 24 C -0.060 4.060 25 O 0.102 5.898 26 N -0.344 5.344 27 C -0.104 4.104 28 C -0.130 4.130 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.398 0.602 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.343 0.657 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.170 0.830 41 H 0.216 0.784 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.041 -24.011 -1.986 36.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.042 3.958 15 H 0.107 0.893 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.020 4.020 19 H 0.066 0.934 20 N -0.312 5.312 21 C 0.008 3.992 22 C -0.144 4.144 23 C -0.256 4.256 24 C -0.142 4.142 25 O 0.033 5.967 26 N -0.046 5.046 27 C -0.142 4.142 28 C -0.169 4.169 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.187 0.813 41 H 0.233 0.767 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 28.290 -20.382 -2.505 34.958 hybrid contribution -1.636 -2.621 0.246 3.100 sum 26.654 -23.003 -2.259 35.280 Atomic orbital electron populations 1.69939 1.05920 1.27756 1.48116 1.24711 0.94443 0.98957 0.93163 0.86735 0.81911 0.83268 0.79945 1.19212 1.19941 1.15910 1.22325 0.88332 0.97520 1.58759 0.89424 1.84796 1.09197 1.00129 1.97419 1.23287 0.94176 1.04334 1.05731 1.20276 0.90507 0.82435 0.75098 1.90701 1.58735 1.42181 1.47650 1.46042 1.07265 1.07950 1.77465 1.20917 0.81160 0.97224 0.96532 0.89307 1.21751 0.96033 0.96554 1.01740 1.21636 0.95418 1.02359 0.95987 1.21611 0.86102 0.97672 0.96635 0.93433 1.60408 1.14707 1.52286 1.03799 1.20213 0.85808 0.99311 0.93900 1.23519 0.97813 0.90063 1.02999 1.22770 0.93320 1.00638 1.08826 1.26041 0.99792 0.86482 1.01848 1.84892 1.25627 1.22659 1.63475 1.73918 0.90492 1.22170 1.18027 1.21481 0.95233 0.96401 1.01132 1.21943 0.95254 1.02834 0.96876 0.91956 0.88579 0.88526 0.76831 0.91389 0.90805 0.91636 0.90471 0.83863 0.89032 0.92783 0.81258 0.76742 0.90785 0.91912 0.91996 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.95 27.74 -169.99 -4.71 17.23 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.03 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.11 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 11 C 0.53 9.35 7.81 -10.99 -0.09 9.26 16 12 O -0.52 -11.17 15.52 5.55 0.09 -11.08 16 13 N -0.73 -9.09 5.08 -53.81 -0.27 -9.36 16 14 C 0.15 1.60 2.45 -67.93 -0.17 1.43 16 15 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 16 C -0.12 -0.91 5.39 -26.73 -0.14 -1.06 16 17 C -0.12 -0.77 5.19 -26.73 -0.14 -0.91 16 18 C 0.09 0.64 2.49 -67.71 -0.17 0.47 16 19 H 0.05 0.32 7.80 -51.93 -0.41 -0.09 16 20 N -0.68 -4.99 6.30 -108.00 -0.68 -5.67 16 21 C 0.14 0.96 6.07 -4.98 -0.03 0.93 16 22 C 0.02 0.12 6.84 -82.10 -0.56 -0.44 16 23 C -0.23 -1.19 11.12 -39.38 -0.44 -1.63 16 24 C -0.06 -0.26 12.30 29.74 0.37 0.10 16 25 O 0.10 0.82 11.20 17.19 0.19 1.01 16 26 N -0.34 -3.49 12.07 33.42 0.40 -3.09 16 27 C -0.10 -0.98 5.42 -26.73 -0.14 -1.12 16 28 C -0.13 -1.38 5.50 -26.73 -0.15 -1.53 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 30 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 31 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.40 3.77 8.60 -40.82 -0.35 3.42 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.34 2.10 8.34 -39.29 -0.33 1.78 16 38 H 0.09 0.74 7.43 -51.93 -0.39 0.35 16 39 H 0.05 0.28 8.06 -51.93 -0.42 -0.14 16 40 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.22 -0.03 8.06 -52.49 -0.42 -0.45 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -35.90 384.64 -8.53 -44.43 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.90 Total: 0.97 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.22 Total: -8.74 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.23 Total: -44.02 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.28 Total: -10.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.90 -8.53 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698706108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.466 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds