Wall clock time and date at job start Tue Mar 31 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00515 * 2 1 4 4 H 1.48503 * 109.46740 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47499 * 119.99938 * 3 2 1 6 6 H 1.48504 * 109.47201 * 240.00378 * 3 2 1 7 7 C 1.38820 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00285 * 174.07144 * 9 7 2 11 11 C 1.52998 * 109.54327 * 62.21846 * 10 9 7 12 12 N 1.46499 * 109.47164 * 54.84832 * 11 10 9 13 13 C 1.34779 * 120.00214 * 176.66455 * 12 11 10 14 14 O 1.21278 * 119.99688 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47356 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47356 * 180.02562 * 16 15 13 18 18 C 1.33639 * 122.75043 * 124.73188 * 17 16 15 19 19 S 1.76203 * 107.92408 * 179.97438 * 18 17 16 20 20 C 1.70977 * 90.28039 * 0.27503 * 19 18 17 21 21 N 1.29020 * 110.17273 * 359.83956 * 20 19 18 22 22 C 1.53177 * 109.54184 * 302.04562 * 10 9 7 23 23 C 1.53285 * 109.06031 * 297.02638 * 22 10 9 24 24 O 1.42900 * 109.46053 * 302.44532 * 23 22 10 25 25 C 1.42904 * 114.09943 * 61.15813 * 24 23 22 26 26 C 1.53087 * 109.41425 * 298.84255 * 25 24 23 27 27 H 0.97000 * 119.99280 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99870 * 354.06882 * 9 7 2 29 29 H 1.08999 * 109.47222 * 174.85004 * 11 10 9 30 30 H 1.09005 * 109.46947 * 294.85379 * 11 10 9 31 31 H 0.97003 * 120.00300 * 356.66303 * 12 11 10 32 32 H 1.09007 * 109.47226 * 299.99828 * 15 13 12 33 33 H 1.09001 * 109.47137 * 59.99699 * 15 13 12 34 34 H 1.08994 * 109.46624 * 299.99951 * 16 15 13 35 35 H 1.09000 * 109.46838 * 59.99426 * 16 15 13 36 36 H 1.07996 * 126.03570 * 0.03795 * 18 17 16 37 37 H 1.08004 * 124.91051 * 179.84094 * 20 19 18 38 38 H 1.09001 * 109.52689 * 57.01350 * 22 10 9 39 39 H 1.08998 * 109.52129 * 177.20594 * 22 10 9 40 40 H 1.09007 * 109.45488 * 182.44942 * 23 22 10 41 41 H 1.09001 * 109.46894 * 62.45037 * 23 22 10 42 42 H 1.08998 * 109.48150 * 178.85483 * 25 24 23 43 43 H 1.09003 * 109.48614 * 58.82955 * 25 24 23 44 44 H 1.08995 * 109.52701 * 297.70105 * 26 25 24 45 45 H 1.09004 * 109.57496 * 177.54261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1041 1.6963 -1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0519 -3.6536 -0.1289 11 6 3.0008 -3.8239 1.0592 12 7 2.2445 -3.7084 2.3086 13 6 2.8645 -3.8923 3.4911 14 8 4.0486 -4.1529 3.5208 15 6 2.0865 -3.7740 4.7762 16 6 3.0195 -4.0260 5.9624 17 6 2.2414 -3.9083 7.2475 18 6 2.2023 -4.8831 8.1609 19 16 1.1892 -4.3361 9.4948 20 6 0.9124 -2.8543 8.6880 21 7 1.5384 -2.8382 7.5599 22 6 2.8576 -3.6499 -1.4316 23 6 1.8910 -3.5581 -2.6177 24 8 0.9720 -4.6512 -2.5687 25 6 0.1597 -4.6784 -1.3933 26 6 1.0549 -4.8161 -0.1591 27 1 -0.4849 0.8401 0.0004 28 1 0.3594 -2.3902 0.0888 29 1 3.4727 -4.8052 1.0095 30 1 3.7675 -3.0498 1.0257 31 1 1.2976 -3.4995 2.2849 32 1 1.6631 -2.7725 4.8539 33 1 1.2824 -4.5099 4.7832 34 1 3.4432 -5.0272 5.8850 35 1 3.8233 -3.2898 5.9551 36 1 2.7039 -5.8371 8.0937 37 1 0.3019 -2.0484 9.0677 38 1 3.5314 -2.7931 -1.4409 39 1 3.4366 -4.5705 -1.5044 40 1 2.4550 -3.5988 -3.5497 41 1 1.3412 -2.6183 -2.5664 42 1 -0.5237 -5.5260 -1.4432 43 1 -0.4129 -3.7533 -1.3256 44 1 1.5976 -5.7602 -0.2062 45 1 0.4413 -4.7932 0.7415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699887639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:25 Heat of formation + Delta-G solvation = -33.417198 kcal Electronic energy + Delta-G solvation = -27527.271975 eV Core-core repulsion = 23671.665982 eV Total energy + Delta-G solvation = -3855.605993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16358 -39.59052 -38.69822 -35.82683 -33.47236 -33.40112 -32.15484 -30.62279 -30.02964 -29.17006 -27.09657 -25.51147 -24.17655 -23.89093 -22.96573 -21.84821 -19.86909 -19.70352 -18.60225 -18.08401 -17.26634 -16.80087 -15.97640 -15.63260 -15.57154 -15.41066 -15.28177 -14.64747 -14.51827 -14.27212 -13.93284 -13.75986 -13.58329 -13.43920 -13.11603 -12.86596 -12.64522 -12.18026 -11.98901 -11.96396 -11.72390 -11.55063 -11.43068 -10.99953 -10.90300 -10.88045 -10.78002 -10.37614 -10.03126 -9.83714 -9.75658 -9.70491 -9.68415 -9.45525 -9.20504 -8.99615 -8.77197 -8.43875 -7.10294 -5.86978 -3.17509 0.51498 1.18348 1.50964 2.61023 3.08181 3.39533 3.44669 3.46155 3.71868 4.04983 4.39450 4.51703 4.82846 4.94781 5.07861 5.11283 5.18181 5.25953 5.30148 5.38360 5.47143 5.53414 5.57171 5.65948 5.68034 5.79270 5.90101 6.01752 6.04666 6.09867 6.12562 6.16765 6.23568 6.33065 6.43021 6.55875 6.58457 6.74233 6.80438 7.04204 7.54382 7.64534 7.73245 8.05706 8.30258 8.70087 9.42905 9.93154 10.29902 11.34599 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.002893 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.941604 B = 9675.716634 C =11062.285108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.902 3.098 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.118 3.882 12 N -0.701 5.701 13 C 0.510 3.490 14 O -0.561 6.561 15 C -0.132 4.132 16 C -0.027 4.027 17 C 0.072 3.928 18 C -0.255 4.255 19 S 0.101 5.899 20 C 0.027 3.973 21 N -0.462 5.462 22 C -0.152 4.152 23 C 0.070 3.930 24 O -0.393 6.393 25 C 0.066 3.934 26 C -0.150 4.150 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.403 0.597 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.178 0.822 37 H 0.200 0.800 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -11.493 13.039 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.097 3.903 11 C -0.009 4.009 12 N -0.351 5.351 13 C 0.296 3.704 14 O -0.440 6.440 15 C -0.173 4.173 16 C -0.067 4.067 17 C -0.060 4.060 18 C -0.393 4.393 19 S 0.353 5.647 20 C -0.272 4.272 21 N -0.176 5.176 22 C -0.192 4.192 23 C -0.007 4.007 24 O -0.312 6.312 25 C -0.011 4.011 26 C -0.188 4.188 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.239 0.761 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.195 0.805 37 H 0.216 0.784 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.337 -11.572 13.502 17.786 hybrid contribution 0.177 1.406 -0.386 1.469 sum 0.514 -10.166 13.116 16.603 Atomic orbital electron populations 1.69635 1.05020 1.25887 1.57169 1.24689 0.95398 0.97518 1.02507 0.86356 0.78651 0.83779 0.77925 1.21759 1.21279 1.21257 1.19010 0.90942 0.83659 1.43216 0.91282 1.42469 1.06167 0.99494 1.87328 1.19831 0.91314 0.87337 0.91824 1.21799 0.95095 1.00018 0.83952 1.45771 1.13838 1.70092 1.05367 1.20499 0.87789 0.76701 0.85396 1.90648 1.15871 1.49702 1.87805 1.21537 0.98919 1.05094 0.91745 1.19920 0.96127 1.03990 0.86686 1.20479 0.98521 0.88491 0.98480 1.26876 1.08700 1.05825 0.97934 1.84005 1.44079 1.13439 1.23187 1.28465 1.03279 1.01497 0.93963 1.66148 1.08804 1.26593 1.16007 1.22485 0.98895 1.01497 0.96366 1.22485 0.90828 0.90252 0.97100 1.87792 1.52657 1.49713 1.41088 1.22459 0.92441 1.01619 0.84589 1.22340 0.98952 0.98664 0.98891 0.93426 0.78092 0.92866 0.91783 0.76148 0.87931 0.89462 0.89544 0.89233 0.80483 0.78375 0.90445 0.92695 0.90428 0.91221 0.90125 0.92184 0.91297 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.91 13.07 55.49 0.73 -25.18 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -5.89 8.67 -15.06 -0.13 -6.02 16 8 H 0.07 1.74 6.78 -52.49 -0.36 1.38 16 9 N -0.71 -15.20 3.61 -47.06 -0.17 -15.37 16 10 C 0.19 3.33 0.41 -131.64 -0.05 3.28 16 11 C 0.12 2.10 4.37 -4.04 -0.02 2.09 16 12 N -0.70 -11.83 5.13 -60.30 -0.31 -12.14 16 13 C 0.51 8.57 7.83 -10.99 -0.09 8.48 16 14 O -0.56 -11.06 15.98 5.56 0.09 -10.97 16 15 C -0.13 -1.79 5.60 -27.88 -0.16 -1.94 16 16 C -0.03 -0.34 5.00 -27.88 -0.14 -0.48 16 17 C 0.07 0.85 6.08 -84.22 -0.51 0.33 16 18 C -0.25 -2.41 11.07 29.12 0.32 -2.08 16 19 S 0.10 0.79 23.22 -107.50 -2.50 -1.70 16 20 C 0.03 0.25 12.23 51.58 0.63 0.88 16 21 N -0.46 -5.81 10.34 -11.90 -0.12 -5.93 16 22 C -0.15 -2.64 4.80 -26.49 -0.13 -2.77 16 23 C 0.07 1.23 6.68 37.31 0.25 1.47 16 24 O -0.39 -6.88 10.77 -35.23 -0.38 -7.26 16 25 C 0.07 1.04 6.67 37.20 0.25 1.29 16 26 C -0.15 -2.28 4.80 -26.59 -0.13 -2.41 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.38 8.80 6.81 -40.82 -0.28 8.52 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.31 7.47 -51.93 -0.39 0.92 16 31 H 0.40 6.60 7.42 -40.82 -0.30 6.30 16 32 H 0.10 1.48 8.08 -51.92 -0.42 1.07 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.00 7.98 -51.93 -0.41 0.59 16 35 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.20 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.08 1.44 7.19 -51.93 -0.37 1.06 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.07 1.42 7.75 -51.93 -0.40 1.02 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.06 7.14 -51.93 -0.37 0.69 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.98 7.37 -51.93 -0.38 0.59 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -30.47 378.06 -8.61 -39.08 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -6.63 Total: 15.21 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 0.00 Total: 1.91 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.12 Total: -58.62 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.29 Total: -18.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.47 -8.61 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699887639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.660 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds