Wall clock time and date at job start Tue Mar 31 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00515 * 2 1 4 4 H 1.48503 * 109.46740 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47499 * 119.99938 * 3 2 1 6 6 H 1.48504 * 109.47201 * 240.00378 * 3 2 1 7 7 C 1.38820 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99839 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00285 * 174.07144 * 9 7 2 11 11 C 1.52998 * 109.54327 * 62.21846 * 10 9 7 12 12 N 1.46499 * 109.47164 * 54.84832 * 11 10 9 13 13 C 1.34779 * 120.00214 * 176.66455 * 12 11 10 14 14 O 1.21278 * 119.99688 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.53003 * 109.47356 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47356 * 180.02562 * 16 15 13 18 18 C 1.33639 * 122.75043 * 124.73188 * 17 16 15 19 19 S 1.76203 * 107.92408 * 179.97438 * 18 17 16 20 20 C 1.70977 * 90.28039 * 0.27503 * 19 18 17 21 21 N 1.29020 * 110.17273 * 359.83956 * 20 19 18 22 22 C 1.53177 * 109.54184 * 302.04562 * 10 9 7 23 23 C 1.53285 * 109.06031 * 297.02638 * 22 10 9 24 24 O 1.42900 * 109.46053 * 302.44532 * 23 22 10 25 25 C 1.42904 * 114.09943 * 61.15813 * 24 23 22 26 26 C 1.53087 * 109.41425 * 298.84255 * 25 24 23 27 27 H 0.97000 * 119.99280 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99870 * 354.06882 * 9 7 2 29 29 H 1.08999 * 109.47222 * 174.85004 * 11 10 9 30 30 H 1.09005 * 109.46947 * 294.85379 * 11 10 9 31 31 H 0.97003 * 120.00300 * 356.66303 * 12 11 10 32 32 H 1.09007 * 109.47226 * 299.99828 * 15 13 12 33 33 H 1.09001 * 109.47137 * 59.99699 * 15 13 12 34 34 H 1.08994 * 109.46624 * 299.99951 * 16 15 13 35 35 H 1.09000 * 109.46838 * 59.99426 * 16 15 13 36 36 H 1.07996 * 126.03570 * 0.03795 * 18 17 16 37 37 H 1.08004 * 124.91051 * 179.84094 * 20 19 18 38 38 H 1.09001 * 109.52689 * 57.01350 * 22 10 9 39 39 H 1.08998 * 109.52129 * 177.20594 * 22 10 9 40 40 H 1.09007 * 109.45488 * 182.44942 * 23 22 10 41 41 H 1.09001 * 109.46894 * 62.45037 * 23 22 10 42 42 H 1.08998 * 109.48150 * 178.85483 * 25 24 23 43 43 H 1.09003 * 109.48614 * 58.82955 * 25 24 23 44 44 H 1.08995 * 109.52701 * 297.70105 * 26 25 24 45 45 H 1.09004 * 109.57496 * 177.54261 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1041 1.6963 -1.2126 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0519 -3.6536 -0.1289 11 6 3.0008 -3.8239 1.0592 12 7 2.2445 -3.7084 2.3086 13 6 2.8645 -3.8923 3.4911 14 8 4.0486 -4.1529 3.5208 15 6 2.0865 -3.7740 4.7762 16 6 3.0195 -4.0260 5.9624 17 6 2.2414 -3.9083 7.2475 18 6 2.2023 -4.8831 8.1609 19 16 1.1892 -4.3361 9.4948 20 6 0.9124 -2.8543 8.6880 21 7 1.5384 -2.8382 7.5599 22 6 2.8576 -3.6499 -1.4316 23 6 1.8910 -3.5581 -2.6177 24 8 0.9720 -4.6512 -2.5687 25 6 0.1597 -4.6784 -1.3933 26 6 1.0549 -4.8161 -0.1591 27 1 -0.4849 0.8401 0.0004 28 1 0.3594 -2.3902 0.0888 29 1 3.4727 -4.8052 1.0095 30 1 3.7675 -3.0498 1.0257 31 1 1.2976 -3.4995 2.2849 32 1 1.6631 -2.7725 4.8539 33 1 1.2824 -4.5099 4.7832 34 1 3.4432 -5.0272 5.8850 35 1 3.8233 -3.2898 5.9551 36 1 2.7039 -5.8371 8.0937 37 1 0.3019 -2.0484 9.0677 38 1 3.5314 -2.7931 -1.4409 39 1 3.4366 -4.5705 -1.5044 40 1 2.4550 -3.5988 -3.5497 41 1 1.3412 -2.6183 -2.5664 42 1 -0.5237 -5.5260 -1.4432 43 1 -0.4129 -3.7533 -1.3256 44 1 1.5976 -5.7602 -0.2062 45 1 0.4413 -4.7932 0.7415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699887639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:25 Heat of formation + Delta-G solvation = -54.519179 kcal Electronic energy + Delta-G solvation = -27528.187026 eV Core-core repulsion = 23671.665982 eV Total energy + Delta-G solvation = -3856.521044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.21211 -40.78699 -40.04364 -37.31351 -35.09410 -34.48036 -33.80083 -31.96961 -31.01001 -30.85949 -28.39903 -26.42544 -25.92446 -25.00147 -24.36097 -23.21805 -21.22309 -20.48936 -20.11472 -19.11085 -18.84594 -18.07118 -17.18650 -17.02837 -16.79527 -16.72969 -16.48687 -16.14601 -15.85600 -15.55375 -15.42376 -15.24194 -14.77154 -14.35831 -14.21131 -14.10976 -13.93631 -13.69217 -13.44968 -13.18351 -12.96906 -12.92388 -12.82034 -12.68285 -12.44240 -12.27135 -12.10735 -11.99499 -11.75349 -11.40940 -11.13634 -11.01886 -10.82476 -10.57168 -10.39528 -10.32005 -9.89305 -9.72434 -8.97683 -7.91464 -5.17691 -0.18586 0.52751 0.80613 1.45223 1.47324 1.51137 1.71997 1.80395 2.40725 2.56803 3.07693 3.32265 3.41612 3.75847 3.82760 3.88813 3.98830 4.02437 4.14434 4.16017 4.24014 4.31571 4.45483 4.48230 4.56148 4.61681 4.64738 4.77270 4.80471 4.83729 4.89625 4.99223 5.03643 5.04866 5.10402 5.22056 5.23990 5.28955 5.34771 5.58677 5.64246 6.30349 6.36906 6.68059 6.82192 7.33327 7.39896 8.08765 8.35701 9.30330 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.002893 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.941604 B = 9675.716634 C =11062.285108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.058 4.058 3 Si 0.948 3.052 4 H -0.298 1.298 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.215 4.215 8 H 0.064 0.936 9 N -0.712 5.712 10 C 0.187 3.813 11 C 0.125 3.875 12 N -0.700 5.700 13 C 0.508 3.492 14 O -0.591 6.591 15 C -0.120 4.120 16 C -0.021 4.021 17 C 0.047 3.953 18 C -0.256 4.256 19 S 0.162 5.838 20 C 0.014 3.986 21 N -0.506 5.506 22 C -0.150 4.150 23 C 0.076 3.924 24 O -0.397 6.397 25 C 0.064 3.936 26 C -0.142 4.142 27 H 0.248 0.752 28 H 0.377 0.623 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.406 0.594 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.198 0.802 37 H 0.223 0.777 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.112 0.888 43 H 0.036 0.964 44 H 0.088 0.912 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 -13.711 14.260 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.251 4.251 3 Si 0.779 3.221 4 H -0.225 1.225 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.348 4.348 8 H 0.082 0.918 9 N -0.353 5.353 10 C 0.096 3.904 11 C -0.001 4.001 12 N -0.349 5.349 13 C 0.296 3.704 14 O -0.473 6.473 15 C -0.160 4.160 16 C -0.061 4.061 17 C -0.085 4.085 18 C -0.395 4.395 19 S 0.414 5.586 20 C -0.283 4.283 21 N -0.220 5.220 22 C -0.190 4.190 23 C -0.001 4.001 24 O -0.316 6.316 25 C -0.013 4.013 26 C -0.180 4.180 27 H 0.057 0.943 28 H 0.211 0.789 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.215 0.785 37 H 0.239 0.761 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.053 0.947 42 H 0.130 0.870 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.090 -13.816 14.728 20.195 hybrid contribution 0.288 1.989 -0.687 2.124 sum 0.378 -11.827 14.042 18.363 Atomic orbital electron populations 1.69741 1.05854 1.25564 1.59676 1.25180 0.95972 0.99704 1.04287 0.85607 0.77472 0.81399 0.77605 1.22471 1.21798 1.20889 1.19152 0.90768 0.84813 1.40018 0.91806 1.42486 1.05819 0.99995 1.87014 1.20026 0.91824 0.86702 0.91845 1.21648 0.94470 0.99606 0.84413 1.45793 1.13895 1.69977 1.05270 1.21071 0.87560 0.75622 0.86187 1.90629 1.17307 1.51088 1.88263 1.21470 0.99204 1.05108 0.90235 1.19788 0.95461 1.03673 0.87190 1.20329 0.99834 0.89474 0.98814 1.27198 1.08251 1.06049 0.97998 1.83800 1.42206 1.11429 1.21136 1.28909 1.02858 1.03099 0.93473 1.66128 1.10305 1.27694 1.17894 1.22455 0.98672 1.01927 0.95955 1.22390 0.90620 0.88901 0.98205 1.87794 1.52697 1.49162 1.41979 1.22584 0.92557 1.01826 0.84285 1.22295 0.98423 0.97995 0.99250 0.94319 0.78897 0.91514 0.94867 0.75756 0.89052 0.87064 0.88651 0.91617 0.78475 0.76089 0.92164 0.90337 0.88357 0.94723 0.86976 0.94540 0.89300 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.52 13.07 21.65 0.28 -54.24 16 2 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 3 Si 0.95 45.45 29.55 68.60 2.03 47.47 16 4 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.22 -10.82 8.67 84.04 0.73 -10.10 16 8 H 0.06 3.26 6.78 -2.91 -0.02 3.24 16 9 N -0.71 -30.53 3.61 -302.81 -1.09 -31.62 16 10 C 0.19 6.41 0.41 3.72 0.00 6.41 16 11 C 0.13 4.39 4.37 86.38 0.38 4.77 16 12 N -0.70 -23.21 5.13 -463.06 -2.38 -25.58 16 13 C 0.51 16.92 7.83 87.66 0.69 17.61 16 14 O -0.59 -23.37 15.98 -3.02 -0.05 -23.42 16 15 C -0.12 -3.18 5.60 29.85 0.17 -3.02 16 16 C -0.02 -0.52 5.00 29.85 0.15 -0.37 16 17 C 0.05 1.06 6.08 41.52 0.25 1.31 16 18 C -0.26 -4.30 11.07 66.78 0.74 -3.56 16 19 S 0.16 2.12 23.22 -56.49 -1.31 0.80 16 20 C 0.01 0.24 12.23 130.66 1.60 1.84 16 21 N -0.51 -12.39 10.34 -191.55 -1.98 -14.37 16 22 C -0.15 -5.04 4.80 30.75 0.15 -4.89 16 23 C 0.08 2.58 6.68 72.08 0.48 3.06 16 24 O -0.40 -13.12 10.77 -148.98 -1.60 -14.73 16 25 C 0.06 1.89 6.67 72.01 0.48 2.37 16 26 C -0.14 -3.96 4.80 30.68 0.15 -3.82 16 27 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.38 17.43 6.81 -92.70 -0.63 16.80 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.37 7.47 -2.38 -0.02 1.35 16 31 H 0.41 13.02 7.42 -92.71 -0.69 12.33 16 32 H 0.09 2.67 8.08 -2.38 -0.02 2.65 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 2.14 7.98 -2.39 -0.02 2.12 16 35 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.06 2.22 7.19 -2.39 -0.02 2.21 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 40 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 41 H 0.03 1.42 7.75 -2.39 -0.02 1.41 16 42 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.04 1.26 7.14 -2.39 -0.02 1.24 16 44 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.08 2.10 7.37 -2.39 -0.02 2.08 16 Total: -1.00 -66.65 378.06 0.02 -66.63 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.30 Total: 40.12 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.42 Total: 8.94 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -5.17 Total: -125.81 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.65 Total: -38.15 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.31 Total: 0.80 kcal Total: -66.65 0.02 -66.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699887639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.106 kcal (2) G-P(sol) polarization free energy of solvation -66.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds