Wall clock time and date at job start Tue Mar 31 2020 22:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99802 * 2 1 4 4 H 1.48500 * 109.47024 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46835 * 120.00084 * 3 2 1 7 7 C 1.38805 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99827 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99923 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46578 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46578 * 180.02562 * 11 10 9 13 13 C 1.46504 * 119.99699 * 270.00274 * 12 11 10 14 14 C 1.53007 * 109.47023 * 274.08717 * 13 12 11 15 15 O 1.42900 * 109.46522 * 65.00148 * 14 13 12 16 16 C 1.34773 * 120.00194 * 90.00268 * 12 11 10 17 17 O 1.21692 * 119.99773 * 3.62044 * 16 12 11 18 18 C 1.46681 * 120.00295 * 183.62473 * 16 12 11 19 19 C 1.35659 * 126.13351 * 145.51565 * 18 16 12 20 20 N 1.30945 * 114.19054 * 179.73275 * 19 18 16 21 21 C 1.29431 * 117.36627 * 0.50745 * 20 19 18 22 22 C 1.50692 * 124.80669 * 179.77096 * 21 20 19 23 23 C 1.53002 * 109.47425 * 89.70077 * 22 21 20 24 24 C 1.52992 * 117.50149 * 243.62512 * 23 22 21 25 25 C 1.52997 * 117.49952 * 174.99753 * 23 22 21 26 26 S 1.70958 * 110.38689 * 359.51117 * 21 20 19 27 27 H 0.97004 * 120.00184 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00086 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47185 * 60.00131 * 10 9 7 30 30 H 1.08993 * 109.47254 * 299.99426 * 10 9 7 31 31 H 1.09003 * 109.46915 * 60.00383 * 11 10 9 32 32 H 1.08990 * 109.47699 * 299.99751 * 11 10 9 33 33 H 1.08990 * 109.47554 * 34.08773 * 13 12 11 34 34 H 1.08999 * 109.47016 * 154.09656 * 13 12 11 35 35 H 1.08992 * 109.47096 * 184.99898 * 14 13 12 36 36 H 1.08996 * 109.47452 * 305.00501 * 14 13 12 37 37 H 0.96704 * 113.99977 * 179.97438 * 15 14 13 38 38 H 1.07999 * 122.90270 * 359.97438 * 19 18 16 39 39 H 1.09005 * 109.46995 * 209.70442 * 22 21 20 40 40 H 1.09003 * 109.47073 * 329.69780 * 22 21 20 41 41 H 1.09005 * 115.54349 * 29.32890 * 23 22 21 42 42 H 1.09005 * 117.49744 * 359.97438 * 24 23 22 43 43 H 1.08995 * 117.50256 * 145.01954 * 24 23 22 44 44 H 1.08996 * 117.49679 * 214.97826 * 25 23 22 45 45 H 1.09001 * 117.50193 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7965 -6.0884 0.0018 13 6 2.1628 -6.7233 -1.2667 14 6 0.9996 -7.5868 -1.7594 15 8 -0.1185 -6.7507 -2.0640 16 6 2.1335 -6.6714 1.1692 17 8 1.7725 -6.1788 2.2218 18 6 2.9354 -7.8996 1.1711 19 6 3.8676 -8.2449 2.0943 20 7 4.4416 -9.4004 1.8709 21 6 4.0702 -10.0557 0.8183 22 6 4.6215 -11.3941 0.3993 23 6 3.7911 -12.5100 1.0366 24 6 4.4958 -13.4358 2.0300 25 6 4.1198 -13.9503 0.6390 26 16 2.8605 -9.1911 -0.0254 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6849 -3.7145 0.8906 30 1 2.6848 -3.7145 -0.8894 31 1 0.4369 -4.7621 -0.8886 32 1 0.4376 -4.7618 0.8913 33 1 2.3838 -5.9548 -2.0072 34 1 3.0427 -7.3494 -1.1189 35 1 1.3032 -8.1283 -2.6552 36 1 0.7203 -8.2980 -0.9820 37 1 -0.8940 -7.2319 -2.3834 38 1 4.1121 -7.6225 2.9423 39 1 4.5761 -11.4820 -0.6862 40 1 5.6574 -11.4793 0.7276 41 1 2.7460 -12.2669 1.2289 42 1 5.5513 -13.2502 2.2292 43 1 3.9146 -13.8020 2.8762 44 1 3.2911 -14.6550 0.5702 45 1 4.9274 -14.1030 -0.0769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700032284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:57 Heat of formation + Delta-G solvation = 6.813996 kcal Electronic energy + Delta-G solvation = -26667.529225 eV Core-core repulsion = 22813.667788 eV Total energy + Delta-G solvation = -3853.861438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43563 -39.56089 -37.90055 -37.27161 -35.60566 -34.35415 -32.36284 -31.43434 -29.64303 -29.26232 -27.27084 -24.94595 -23.70816 -23.37479 -22.82695 -21.91706 -21.29508 -20.65721 -19.09714 -18.60376 -17.70130 -17.19099 -16.93411 -16.31642 -15.85718 -15.64217 -15.30232 -14.97376 -14.75940 -14.41053 -14.12966 -13.82771 -13.74639 -13.66780 -13.34246 -13.15193 -13.01772 -12.82431 -12.52307 -12.09574 -11.97183 -11.86728 -11.79761 -11.22478 -10.91496 -10.89873 -10.86008 -10.60881 -10.49539 -10.34599 -10.18654 -10.08340 -9.78261 -9.68010 -9.53868 -9.16638 -8.81476 -8.57014 -6.87421 -5.70386 -2.99498 0.03713 0.83647 1.26614 2.30705 2.85030 3.08960 3.28492 3.48764 3.52449 3.54125 3.65343 3.96896 4.24991 4.34108 4.40442 4.47796 4.65124 4.65996 4.77126 4.90485 4.95780 5.03198 5.10187 5.13987 5.15534 5.19914 5.21850 5.45528 5.53377 5.59651 5.65537 5.71224 5.77245 5.85450 5.92499 6.08691 6.23934 6.53792 6.77426 6.94940 7.31035 7.39151 7.48295 7.74658 8.10376 8.47960 9.58749 10.15444 10.50940 11.52401 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.002298 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.038015 B =12184.157025 C =12890.117863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.143 3.857 11 C 0.112 3.888 12 N -0.589 5.589 13 C 0.092 3.908 14 C 0.058 3.942 15 O -0.558 6.558 16 C 0.587 3.413 17 O -0.513 6.513 18 C -0.282 4.282 19 C 0.113 3.887 20 N -0.471 5.471 21 C 0.044 3.956 22 C -0.015 4.015 23 C -0.152 4.152 24 C -0.172 4.172 25 C -0.176 4.176 26 S 0.173 5.827 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.379 0.621 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 -31.572 -4.694 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.014 3.986 11 C -0.010 4.010 12 N -0.321 5.321 13 C -0.033 4.033 14 C -0.021 4.021 15 O -0.363 6.363 16 C 0.372 3.628 17 O -0.390 6.390 18 C -0.406 4.406 19 C -0.043 4.043 20 N -0.185 5.185 21 C -0.230 4.230 22 C -0.056 4.056 23 C -0.172 4.172 24 C -0.209 4.209 25 C -0.213 4.213 26 S 0.430 5.570 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.226 0.774 38 H 0.204 0.796 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.768 -31.138 -4.526 32.185 hybrid contribution 0.046 0.991 0.579 1.149 sum 6.813 -30.147 -3.946 31.158 Atomic orbital electron populations 1.69657 1.05071 1.25731 1.57697 1.24748 0.95567 0.97671 1.03041 0.86235 0.78482 0.83453 0.77819 1.21304 1.21659 1.21264 1.19160 0.90964 0.84004 1.42768 0.91289 1.42177 1.05880 0.99675 1.89589 1.20913 0.93905 0.85847 0.97940 1.21820 0.94545 0.80325 1.04281 1.47667 1.56307 1.23639 1.04496 1.22051 0.95985 0.98369 0.86913 1.22726 0.88019 0.92605 0.98763 1.86603 1.24460 1.36824 1.88459 1.16850 0.79535 0.82008 0.84366 1.90891 1.53411 1.64002 1.30671 1.25849 1.09155 1.02512 1.03088 1.22149 0.91626 0.91864 0.98616 1.66226 1.27913 1.06859 1.17499 1.27541 0.99331 1.01332 0.94844 1.19887 0.99821 0.85351 1.00511 1.22179 1.00014 0.90473 1.04538 1.23056 1.01477 1.03143 0.93257 1.23017 1.03738 0.95768 0.98747 1.84075 1.37234 1.10423 1.25318 0.93470 0.78180 0.96159 0.96499 0.88791 0.89720 0.88137 0.88765 0.92083 0.93658 0.77420 0.79617 0.88936 0.88399 0.87614 0.88360 0.88695 0.88518 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.68 5.60 -59.90 -0.34 -20.01 16 10 C 0.14 3.16 6.58 -4.04 -0.03 3.13 16 11 C 0.11 2.07 5.37 -4.04 -0.02 2.05 16 12 N -0.59 -8.97 2.46 -175.22 -0.43 -9.40 16 13 C 0.09 1.02 5.36 -4.04 -0.02 1.00 16 14 C 0.06 0.52 6.42 37.16 0.24 0.76 16 15 O -0.56 -5.95 12.11 -35.23 -0.43 -6.38 16 16 C 0.59 9.54 7.58 -12.85 -0.10 9.44 16 17 O -0.51 -10.42 16.59 5.20 0.09 -10.34 16 18 C -0.28 -3.60 5.69 -37.10 -0.21 -3.82 16 19 C 0.11 1.42 11.24 -18.85 -0.21 1.21 16 20 N -0.47 -5.45 10.51 -11.50 -0.12 -5.57 16 21 C 0.04 0.40 6.59 -13.29 -0.09 0.31 16 22 C -0.02 -0.09 6.07 -27.89 -0.17 -0.26 16 23 C -0.15 -0.90 5.72 -90.62 -0.52 -1.42 16 24 C -0.17 -0.98 10.18 -26.73 -0.27 -1.25 16 25 C -0.18 -0.79 10.25 -26.73 -0.27 -1.06 16 26 S 0.17 1.47 17.32 -107.50 -1.86 -0.40 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.38 10.80 7.67 -40.82 -0.31 10.48 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.71 6.75 -51.93 -0.35 1.35 16 32 H 0.08 1.73 7.37 -51.93 -0.38 1.35 16 33 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.09 0.89 4.74 -32.70 -0.16 0.73 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.39 6.65 -51.93 -0.35 0.05 16 37 H 0.38 2.30 9.12 45.56 0.42 2.71 16 38 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.58 7.88 -51.93 -0.41 0.17 16 41 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 42 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -36.80 386.64 -9.21 -46.01 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.73 Total: 8.08 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.92 Total: 2.43 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.16 Total: -63.36 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.34 Total: -16.72 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.86 Total: -0.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.80 -9.21 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700032284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.823 kcal (2) G-P(sol) polarization free energy of solvation -36.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds