Wall clock time and date at job start Tue Mar 31 2020 22:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99802 * 2 1 4 4 H 1.48500 * 109.47024 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46835 * 120.00084 * 3 2 1 7 7 C 1.38805 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99827 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99923 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46578 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46578 * 180.02562 * 11 10 9 13 13 C 1.46504 * 119.99699 * 270.00274 * 12 11 10 14 14 C 1.53007 * 109.47023 * 274.08717 * 13 12 11 15 15 O 1.42900 * 109.46522 * 65.00148 * 14 13 12 16 16 C 1.34773 * 120.00194 * 90.00268 * 12 11 10 17 17 O 1.21692 * 119.99773 * 3.62044 * 16 12 11 18 18 C 1.46681 * 120.00295 * 183.62473 * 16 12 11 19 19 C 1.35659 * 126.13351 * 145.51565 * 18 16 12 20 20 N 1.30945 * 114.19054 * 179.73275 * 19 18 16 21 21 C 1.29431 * 117.36627 * 0.50745 * 20 19 18 22 22 C 1.50692 * 124.80669 * 179.77096 * 21 20 19 23 23 C 1.53002 * 109.47425 * 89.70077 * 22 21 20 24 24 C 1.52992 * 117.50149 * 243.62512 * 23 22 21 25 25 C 1.52997 * 117.49952 * 174.99753 * 23 22 21 26 26 S 1.70958 * 110.38689 * 359.51117 * 21 20 19 27 27 H 0.97004 * 120.00184 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00086 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47185 * 60.00131 * 10 9 7 30 30 H 1.08993 * 109.47254 * 299.99426 * 10 9 7 31 31 H 1.09003 * 109.46915 * 60.00383 * 11 10 9 32 32 H 1.08990 * 109.47699 * 299.99751 * 11 10 9 33 33 H 1.08990 * 109.47554 * 34.08773 * 13 12 11 34 34 H 1.08999 * 109.47016 * 154.09656 * 13 12 11 35 35 H 1.08992 * 109.47096 * 184.99898 * 14 13 12 36 36 H 1.08996 * 109.47452 * 305.00501 * 14 13 12 37 37 H 0.96704 * 113.99977 * 179.97438 * 15 14 13 38 38 H 1.07999 * 122.90270 * 359.97438 * 19 18 16 39 39 H 1.09005 * 109.46995 * 209.70442 * 22 21 20 40 40 H 1.09003 * 109.47073 * 329.69780 * 22 21 20 41 41 H 1.09005 * 115.54349 * 29.32890 * 23 22 21 42 42 H 1.09005 * 117.49744 * 359.97438 * 24 23 22 43 43 H 1.08995 * 117.50256 * 145.01954 * 24 23 22 44 44 H 1.08996 * 117.49679 * 214.97826 * 25 23 22 45 45 H 1.09001 * 117.50193 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7965 -6.0884 0.0018 13 6 2.1628 -6.7233 -1.2667 14 6 0.9996 -7.5868 -1.7594 15 8 -0.1185 -6.7507 -2.0640 16 6 2.1335 -6.6714 1.1692 17 8 1.7725 -6.1788 2.2218 18 6 2.9354 -7.8996 1.1711 19 6 3.8676 -8.2449 2.0943 20 7 4.4416 -9.4004 1.8709 21 6 4.0702 -10.0557 0.8183 22 6 4.6215 -11.3941 0.3993 23 6 3.7911 -12.5100 1.0366 24 6 4.4958 -13.4358 2.0300 25 6 4.1198 -13.9503 0.6390 26 16 2.8605 -9.1911 -0.0254 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6849 -3.7145 0.8906 30 1 2.6848 -3.7145 -0.8894 31 1 0.4369 -4.7621 -0.8886 32 1 0.4376 -4.7618 0.8913 33 1 2.3838 -5.9548 -2.0072 34 1 3.0427 -7.3494 -1.1189 35 1 1.3032 -8.1283 -2.6552 36 1 0.7203 -8.2980 -0.9820 37 1 -0.8940 -7.2319 -2.3834 38 1 4.1121 -7.6225 2.9423 39 1 4.5761 -11.4820 -0.6862 40 1 5.6574 -11.4793 0.7276 41 1 2.7460 -12.2669 1.2289 42 1 5.5513 -13.2502 2.2292 43 1 3.9146 -13.8020 2.8762 44 1 3.2911 -14.6550 0.5702 45 1 4.9274 -14.1030 -0.0769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700032284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:56 Heat of formation + Delta-G solvation = -20.861197 kcal Electronic energy + Delta-G solvation = -26668.729312 eV Core-core repulsion = 22813.667788 eV Total energy + Delta-G solvation = -3855.061524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.50806 -40.55874 -38.38426 -38.20418 -37.12092 -35.99632 -33.71022 -32.83954 -30.98410 -30.16099 -28.72504 -26.14494 -25.27039 -24.29149 -23.56944 -23.18413 -21.99669 -21.67611 -20.00797 -19.69742 -19.14696 -18.47610 -18.00387 -17.44152 -16.95123 -16.51643 -16.39307 -16.02644 -15.86969 -15.60674 -15.36749 -15.22439 -15.02208 -14.77887 -14.59748 -14.39075 -14.14534 -13.68378 -13.52952 -13.13876 -12.96049 -12.85510 -12.76542 -12.58308 -12.52501 -12.30945 -12.24839 -12.17781 -11.89726 -11.43397 -11.30259 -11.08391 -10.98599 -10.87589 -10.60742 -10.42458 -10.02915 -9.79087 -9.08981 -7.98455 -5.30041 -0.83325 0.01223 0.45064 1.32223 1.44756 1.49566 1.55427 1.66509 1.96635 2.54402 2.86122 2.98697 3.26883 3.32397 3.35092 3.79209 3.87022 3.91742 4.01200 4.03330 4.07645 4.15978 4.17961 4.19397 4.27705 4.36235 4.50337 4.52398 4.59419 4.66087 4.73961 4.76402 4.86395 4.96161 4.98576 5.03072 5.09445 5.28456 5.32010 5.33696 5.44722 6.14170 6.22053 6.54769 6.85400 6.93893 7.28133 7.98786 8.25383 9.24605 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.002298 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.038015 B =12184.157025 C =12890.117863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.981 3.019 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.073 0.927 9 N -0.741 5.741 10 C 0.149 3.851 11 C 0.132 3.868 12 N -0.587 5.587 13 C 0.081 3.919 14 C 0.059 3.941 15 O -0.587 6.587 16 C 0.586 3.414 17 O -0.569 6.569 18 C -0.321 4.321 19 C 0.114 3.886 20 N -0.497 5.497 21 C 0.050 3.950 22 C -0.016 4.016 23 C -0.162 4.162 24 C -0.188 4.188 25 C -0.158 4.158 26 S 0.256 5.744 27 H 0.254 0.746 28 H 0.376 0.624 29 H 0.000 1.000 30 H 0.029 0.971 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.398 0.602 38 H 0.177 0.823 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.837 -33.878 -7.050 35.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.808 3.192 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.386 4.386 8 H 0.091 0.909 9 N -0.384 5.384 10 C 0.021 3.979 11 C 0.009 3.991 12 N -0.318 5.318 13 C -0.042 4.042 14 C -0.020 4.020 15 O -0.396 6.396 16 C 0.373 3.627 17 O -0.450 6.450 18 C -0.445 4.445 19 C -0.044 4.044 20 N -0.211 5.211 21 C -0.224 4.224 22 C -0.056 4.056 23 C -0.182 4.182 24 C -0.225 4.225 25 C -0.195 4.195 26 S 0.514 5.486 27 H 0.063 0.937 28 H 0.208 0.792 29 H 0.018 0.982 30 H 0.047 0.953 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.248 0.752 38 H 0.194 0.806 39 H 0.141 0.859 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.033 -33.514 -6.944 35.155 hybrid contribution -0.311 1.546 1.280 2.031 sum 7.722 -31.968 -5.664 33.371 Atomic orbital electron populations 1.69823 1.06632 1.26432 1.58766 1.25665 0.96562 1.01315 1.03060 0.85119 0.77200 0.78596 0.78250 1.19873 1.21636 1.20642 1.19557 0.91420 0.85176 1.42409 0.90889 1.42349 1.05652 1.00831 1.89591 1.20946 0.94280 0.85473 0.97176 1.21345 0.93537 0.80905 1.03294 1.47687 1.55633 1.22425 1.06064 1.22439 0.98053 0.98943 0.84772 1.22791 0.86783 0.91848 1.00543 1.86541 1.25812 1.38451 1.88788 1.17298 0.78985 0.82740 0.83673 1.90847 1.55660 1.65920 1.32563 1.25532 1.09852 1.03062 1.06065 1.22136 0.91642 0.92285 0.98360 1.66303 1.28951 1.06783 1.19070 1.28218 0.98501 1.01872 0.93805 1.20119 0.99796 0.83398 1.02314 1.22160 0.99553 0.91239 1.05217 1.23123 1.01467 1.03889 0.93982 1.23100 1.04089 0.94468 0.97795 1.83608 1.35580 1.07096 1.22319 0.93735 0.79232 0.98200 0.95283 0.88044 0.92285 0.88264 0.86850 0.87922 0.93356 0.75194 0.80644 0.85898 0.87991 0.88367 0.88340 0.89178 0.87833 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 2 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.98 47.81 29.55 68.60 2.03 49.83 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.25 -15.17 9.99 84.03 0.84 -14.33 16 8 H 0.07 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.74 -41.17 5.60 -343.44 -1.92 -43.10 16 10 C 0.15 6.81 6.58 86.38 0.57 7.37 16 11 C 0.13 5.07 5.37 86.38 0.46 5.54 16 12 N -0.59 -18.03 2.46 -826.50 -2.03 -20.06 16 13 C 0.08 1.66 5.36 86.38 0.46 2.12 16 14 C 0.06 0.88 6.42 71.98 0.46 1.34 16 15 O -0.59 -11.40 12.11 -148.98 -1.80 -13.21 16 16 C 0.59 19.69 7.58 86.45 0.65 20.34 16 17 O -0.57 -24.70 16.59 -4.32 -0.07 -24.77 16 18 C -0.32 -8.16 5.69 23.88 0.14 -8.02 16 19 C 0.11 2.91 11.24 84.23 0.95 3.85 16 20 N -0.50 -11.09 10.51 -190.31 -2.00 -13.09 16 21 C 0.05 0.78 6.59 88.46 0.58 1.37 16 22 C -0.02 -0.14 6.07 29.85 0.18 0.04 16 23 C -0.16 -1.50 5.72 -10.80 -0.06 -1.56 16 24 C -0.19 -1.81 10.18 30.59 0.31 -1.50 16 25 C -0.16 -0.94 10.25 30.59 0.31 -0.63 16 26 S 0.26 3.65 17.32 -56.49 -0.98 2.67 16 27 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.38 21.88 7.67 -92.71 -0.71 21.17 16 29 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 3.74 6.75 -2.39 -0.02 3.72 16 32 H 0.06 2.57 7.37 -2.39 -0.02 2.55 16 33 H 0.10 2.10 8.10 -2.39 -0.02 2.09 16 34 H 0.11 1.83 4.74 -14.61 -0.07 1.76 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.69 6.65 -2.39 -0.02 0.67 16 37 H 0.40 3.97 9.12 -74.05 -0.68 3.30 16 38 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.10 0.89 7.88 -2.39 -0.02 0.88 16 41 H 0.10 1.07 8.07 -2.38 -0.02 1.06 16 42 H 0.10 0.93 8.03 -2.38 -0.02 0.91 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -82.45 386.64 -0.58 -83.03 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.41 Total: 27.72 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.33 Total: 11.98 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -5.67 Total: -137.26 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.88 Total: -37.98 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.83 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -0.98 Total: 2.67 kcal Total: -82.45 -0.58 -83.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700032284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.171 kcal (2) G-P(sol) polarization free energy of solvation -82.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds