Wall clock time and date at job start Tue Mar 31 2020 23:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99860 * 2 1 4 4 C 1.50703 * 109.47081 * 179.97438 * 3 2 1 5 5 N 1.29433 * 124.80186 * 90.02199 * 4 3 2 6 6 C 1.30945 * 117.36310 * 179.97438 * 5 4 3 7 7 C 1.35656 * 114.19080 * 359.97438 * 6 5 4 8 8 C 1.46683 * 126.13088 * 179.97438 * 7 6 5 9 9 O 1.21688 * 120.00334 * 331.38436 * 8 7 6 10 10 N 1.34776 * 120.00053 * 151.38184 * 8 7 6 11 11 C 1.46925 * 120.63185 * 173.53216 * 10 8 7 12 12 C 1.53194 * 108.77689 * 126.37029 * 11 10 8 13 13 C 1.53041 * 109.31383 * 54.63478 * 12 11 10 14 14 C 1.52998 * 109.46160 * 178.63174 * 13 12 11 15 15 N 1.46499 * 109.45780 * 58.65606 * 13 12 11 16 16 C 1.36934 * 119.99894 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99921 * 0.02562 * 16 15 13 18 18 C 1.38808 * 120.00191 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99728 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00530 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47275 * 179.97438 * 20 18 16 22 22 H 1.48496 * 109.46847 * 300.00089 * 20 18 16 23 23 H 1.48506 * 109.46840 * 59.99619 * 20 18 16 24 24 C 1.53045 * 109.52479 * 298.64270 * 13 12 11 25 25 C 1.46926 * 120.63128 * 353.51081 * 10 8 7 26 26 S 1.70948 * 124.80815 * 270.29903 * 4 3 2 27 27 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47598 * 300.00048 * 1 2 3 29 29 H 1.09003 * 109.46941 * 60.00140 * 1 2 3 30 30 H 1.08994 * 109.47276 * 60.00135 * 3 2 1 31 31 H 1.09000 * 109.46905 * 299.99661 * 3 2 1 32 32 H 1.07998 * 122.90405 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.58828 * 6.58179 * 11 10 8 34 34 H 1.08998 * 109.59075 * 246.15681 * 11 10 8 35 35 H 1.09003 * 109.49323 * 294.68473 * 12 11 10 36 36 H 1.08994 * 109.52540 * 174.60647 * 12 11 10 37 37 H 1.09002 * 109.46602 * 300.02438 * 14 13 12 38 38 H 1.08997 * 109.47366 * 60.02263 * 14 13 12 39 39 H 1.09004 * 109.47062 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00314 * 359.97099 * 15 13 12 41 41 H 0.96994 * 119.99924 * 0.02562 * 19 18 16 42 42 H 1.09001 * 109.49327 * 181.30252 * 24 13 12 43 43 H 1.08998 * 109.50219 * 301.40460 * 24 13 12 44 44 H 1.08999 * 109.58671 * 353.41401 * 25 10 8 45 45 H 1.08998 * 109.58876 * 113.84424 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2494 1.1284 -1.0619 6 6 5.5437 1.0264 -0.8918 7 6 5.9330 0.9963 0.4074 8 6 7.3122 0.8872 0.8947 9 8 8.1508 0.3140 0.2246 10 7 7.6508 1.4218 2.0846 11 6 8.9881 1.2004 2.6515 12 6 9.6127 2.5586 2.9863 13 6 8.6649 3.3405 3.8986 14 6 9.3006 4.6837 4.2629 15 7 8.4173 2.5705 5.1201 16 6 7.5939 3.0737 6.0916 17 1 7.1267 4.0381 5.9571 18 6 7.3596 2.3444 7.2491 19 7 7.9286 1.1688 7.4127 20 14 6.2369 3.0312 8.5748 21 1 6.1520 2.0662 9.7003 22 1 6.7842 4.3205 9.0678 23 1 4.8815 3.2525 8.0097 24 6 7.3402 3.5839 3.1719 25 6 6.6898 2.2376 2.8394 26 16 4.4841 1.1024 1.4046 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 6.2411 0.9718 -1.7146 33 1 9.6118 0.6807 1.9242 34 1 8.9058 0.6024 3.5591 35 1 9.7778 3.1197 2.0665 36 1 10.5644 2.4062 3.4953 37 1 10.2439 4.5106 4.7809 38 1 9.4850 5.2567 3.3542 39 1 8.6259 5.2406 4.9130 40 1 8.8366 1.7042 5.2406 41 1 8.5119 0.8124 6.7246 42 1 6.6740 4.1608 3.8133 43 1 7.5267 4.1354 2.2504 44 1 5.7970 2.4023 2.2361 45 1 6.4201 1.7242 3.7623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700287685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:59 Heat of formation + Delta-G solvation = -8.751911 kcal Electronic energy + Delta-G solvation = -27871.651639 eV Core-core repulsion = 24017.115214 eV Total energy + Delta-G solvation = -3854.536426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43144 -39.64183 -38.16398 -37.75908 -34.75970 -32.75024 -31.91496 -30.84918 -29.09134 -28.58940 -27.68161 -26.47351 -24.44949 -23.80682 -23.18091 -23.00660 -21.22363 -19.36844 -18.92606 -18.16101 -17.09657 -16.98048 -16.76723 -16.34471 -15.90392 -15.48999 -15.26076 -15.01102 -14.70927 -14.16782 -14.10204 -13.77783 -13.61624 -13.55405 -13.13864 -12.95522 -12.72321 -12.66896 -12.37902 -11.83455 -11.71506 -11.63420 -11.47173 -11.37325 -10.96739 -10.85761 -10.69449 -10.42241 -10.23716 -10.03788 -10.02648 -9.94119 -9.76374 -9.39495 -9.15056 -9.10618 -8.91942 -8.42065 -7.10028 -6.14010 -3.15448 0.07518 0.98393 1.44498 2.30360 2.99272 3.13174 3.40702 3.46349 3.49058 3.66950 4.03400 4.52250 4.56648 4.60627 4.89704 4.96664 5.00708 5.02360 5.05244 5.15830 5.19182 5.25399 5.32308 5.40611 5.47093 5.61053 5.62807 5.87565 5.88320 5.90438 5.98561 6.09898 6.25721 6.27446 6.35379 6.42189 6.56967 6.63555 6.68293 6.85095 6.93685 7.40401 7.51363 7.75826 8.12068 8.70129 9.15876 10.02629 10.18220 11.33482 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.003778 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.841366 B = 7409.210309 C = 9173.849317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.018 3.982 5 N -0.462 5.462 6 C 0.108 3.892 7 C -0.284 4.284 8 C 0.592 3.408 9 O -0.536 6.536 10 N -0.593 5.593 11 C 0.119 3.881 12 C -0.132 4.132 13 C 0.203 3.797 14 C -0.148 4.148 15 N -0.728 5.728 16 C -0.325 4.325 17 H 0.065 0.935 18 C -0.042 4.042 19 N -0.943 5.943 20 Si 1.074 2.926 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.296 1.296 24 C -0.130 4.130 25 C 0.106 3.894 26 S 0.240 5.760 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.186 0.814 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.367 0.633 41 H 0.255 0.745 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 2.816 -14.089 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.255 4.255 5 N -0.178 5.178 6 C -0.050 4.050 7 C -0.409 4.409 8 C 0.378 3.622 9 O -0.415 6.415 10 N -0.325 5.325 11 C -0.003 4.003 12 C -0.170 4.170 13 C 0.112 3.888 14 C -0.208 4.208 15 N -0.372 5.372 16 C -0.456 4.456 17 H 0.083 0.917 18 C -0.240 4.240 19 N -0.588 5.588 20 Si 0.906 3.094 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.223 1.223 24 C -0.170 4.170 25 C -0.017 4.017 26 S 0.498 5.502 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.203 0.797 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.859 2.266 -12.324 16.581 hybrid contribution 1.112 0.395 -2.126 2.431 sum -9.748 2.661 -14.450 17.632 Atomic orbital electron populations 1.22814 0.79907 1.03382 1.00387 1.87968 1.20386 1.26222 1.95532 1.20804 0.84517 0.86140 1.02633 1.27170 1.00833 1.04086 0.93460 1.66172 1.04731 1.15211 1.31676 1.22058 0.90739 0.96938 0.95275 1.25922 0.98743 1.18086 0.98131 1.16767 0.85153 0.79184 0.81096 1.90805 1.49945 1.44453 1.56301 1.47972 1.15521 1.49982 1.18978 1.21622 0.82060 0.97769 0.98825 1.22124 0.99226 0.95898 0.99758 1.19463 0.91343 0.91267 0.86775 1.22187 1.01014 0.97943 0.99640 1.42523 1.57257 1.20591 1.16825 1.19901 1.23251 1.03666 0.98784 0.91704 1.25647 1.02885 0.96547 0.98952 1.70894 1.33175 1.18189 1.36550 0.83313 0.75123 0.74790 0.76223 1.21149 1.22383 1.22339 1.22265 0.99954 0.95321 0.99508 1.22099 0.90044 0.93072 0.96529 1.84501 0.94805 1.62105 1.08827 0.89088 0.93518 0.93622 0.90573 0.89988 0.79673 0.89371 0.90578 0.91567 0.90595 0.93160 0.94488 0.92385 0.79899 0.93419 0.90238 0.93103 0.91413 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.12 10.69 -35.23 -0.38 -4.50 16 3 C 0.14 1.32 6.51 36.01 0.23 1.55 16 4 C 0.02 0.23 7.02 -13.29 -0.09 0.13 16 5 N -0.46 -6.38 10.51 -11.50 -0.12 -6.50 16 6 C 0.11 1.50 11.20 -18.85 -0.21 1.29 16 7 C -0.28 -4.20 5.79 -37.10 -0.21 -4.41 16 8 C 0.59 9.97 7.60 -12.85 -0.10 9.87 16 9 O -0.54 -10.23 16.41 5.20 0.09 -10.14 16 10 N -0.59 -9.73 2.97 -174.32 -0.52 -10.25 16 11 C 0.12 1.94 6.17 -3.71 -0.02 1.92 16 12 C -0.13 -2.06 4.96 -26.61 -0.13 -2.19 16 13 C 0.20 3.60 0.74 -131.78 -0.10 3.50 16 14 C -0.15 -2.55 8.44 37.16 0.31 -2.23 16 15 N -0.73 -15.94 4.13 -47.19 -0.19 -16.13 16 16 C -0.33 -8.09 8.68 -15.06 -0.13 -8.22 16 17 H 0.07 1.60 6.70 -52.49 -0.35 1.24 16 18 C -0.04 -1.14 5.50 -17.43 -0.10 -1.23 16 19 N -0.94 -27.38 13.70 55.49 0.76 -26.62 16 20 Si 1.07 24.42 29.92 -169.99 -5.09 19.34 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.30 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.13 -2.14 4.70 -26.62 -0.13 -2.26 16 25 C 0.11 1.71 5.30 -3.72 -0.02 1.69 16 26 S 0.24 3.07 19.39 -107.50 -2.08 0.99 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 34 H 0.08 1.33 6.94 -51.93 -0.36 0.97 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 1.07 7.27 -51.93 -0.38 0.69 16 40 H 0.37 8.50 5.29 -40.82 -0.22 8.29 16 41 H 0.25 7.28 6.77 -40.82 -0.28 7.00 16 42 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.97 3.92 -25.75 -0.10 0.87 16 45 H 0.10 1.81 7.74 -51.93 -0.40 1.40 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -31.45 371.08 -7.80 -39.25 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.27 Total: 8.26 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 0.42 Total: 0.73 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.07 Total: -59.51 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.29 Total: -14.64 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.09 Total: 19.34 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.08 Total: 0.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.45 -7.80 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700287685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.494 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds