Wall clock time and date at job start Tue Mar 31 2020 23:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70445 * 124.59195 * 2 1 4 4 C 1.75508 * 92.44717 * 179.97438 * 3 2 1 5 5 C 1.32775 * 110.57157 * 359.73865 * 4 3 2 6 6 C 1.36016 * 124.58997 * 180.02562 * 2 1 3 7 7 C 1.47186 * 123.46173 * 359.97355 * 6 2 1 8 8 O 1.21634 * 120.00249 * 0.02562 * 7 6 2 9 9 N 1.34774 * 119.99768 * 180.02562 * 7 6 2 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 H 1.09007 * 109.46739 * 304.99950 * 12 11 10 14 14 C 1.52999 * 109.47461 * 184.99710 * 12 11 10 15 15 N 1.46895 * 109.47375 * 64.99626 * 12 11 10 16 16 C 1.46903 * 111.00510 * 205.00001 * 15 12 11 17 17 C 1.50695 * 109.47558 * 179.97438 * 16 15 12 18 18 O 1.21291 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00227 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99907 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00047 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99571 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99814 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00262 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47378 * 89.99529 * 24 22 20 26 26 H 1.48501 * 109.47014 * 210.00034 * 24 22 20 27 27 H 1.48501 * 109.46642 * 329.99474 * 24 22 20 28 28 H 1.09000 * 109.47004 * 269.99348 * 1 2 3 29 29 H 1.08995 * 109.47294 * 30.00165 * 1 2 3 30 30 H 1.09001 * 109.46839 * 150.00032 * 1 2 3 31 31 H 1.07996 * 124.71243 * 179.97438 * 4 3 2 32 32 H 1.08004 * 123.45454 * 180.22554 * 5 4 3 33 33 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 35 35 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 36 36 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 37 37 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 38 38 H 1.09006 * 109.46649 * 59.99963 * 14 12 11 39 39 H 1.08992 * 109.47282 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.47049 * 300.00519 * 14 12 11 41 41 H 1.00896 * 111.00356 * 328.95729 * 15 12 11 42 42 H 1.09005 * 109.47029 * 300.00514 * 16 15 12 43 43 H 1.09003 * 109.46582 * 59.99819 * 16 15 12 44 44 H 0.96996 * 119.99482 * 0.02562 * 19 17 16 45 45 H 0.97004 * 120.00014 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4693 0.0008 5 6 3.6943 -0.8314 0.0067 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0005 8 8 0.5247 -2.6553 -0.0006 9 7 2.5598 -3.5462 -0.0005 10 6 2.0123 -4.9051 -0.0011 11 6 3.1596 -5.9172 -0.0004 12 6 2.5878 -7.3363 -0.0016 13 1 1.9043 -7.4533 0.8394 14 6 3.7298 -8.3465 0.1248 15 7 1.8632 -7.5712 -1.2577 16 6 0.8400 -8.6117 -1.0887 17 6 0.1189 -8.8240 -2.3948 18 8 0.4272 -8.1730 -3.3706 19 7 -0.8680 -9.7381 -2.4788 20 6 -1.5236 -9.9316 -3.6672 21 1 -1.2490 -9.3519 -4.5360 22 6 -2.5414 -10.8736 -3.7537 23 7 -3.1695 -11.0595 -4.8929 24 14 -3.0168 -11.8758 -2.2506 25 1 -4.0785 -11.1629 -1.4959 26 1 -3.5222 -13.2042 -2.6810 27 1 -1.8273 -12.0570 -1.3802 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.9538 0.8938 0.0006 32 1 4.4577 -1.5955 0.0118 33 1 3.5202 -3.4104 -0.0009 34 1 1.3995 -5.0503 0.8885 35 1 1.4002 -5.0498 -0.8914 36 1 3.7727 -5.7721 -0.8899 37 1 3.7712 -5.7723 0.8901 38 1 4.2675 -8.1723 1.0569 39 1 3.3224 -9.3574 0.1243 40 1 4.4133 -8.2294 -0.7162 41 1 1.4554 -6.7162 -1.6052 42 1 1.3160 -9.5426 -0.7804 43 1 0.1262 -8.2989 -0.3266 44 1 -1.1143 -10.2590 -1.6985 45 1 -3.8803 -11.7169 -4.9532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700323198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:13 Heat of formation + Delta-G solvation = -44.214221 kcal Electronic energy + Delta-G solvation = -26030.148386 eV Core-core repulsion = 22174.074199 eV Total energy + Delta-G solvation = -3856.074187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22680 -38.66422 -37.57396 -36.96646 -34.95984 -33.92012 -32.25923 -31.75599 -31.42324 -29.41281 -27.32475 -26.53943 -24.54116 -23.70861 -22.75020 -21.84777 -20.58853 -19.59135 -19.29668 -18.31173 -17.63686 -16.99430 -16.42973 -16.08888 -15.73762 -15.39397 -15.16809 -14.82132 -14.68923 -14.18907 -13.95421 -13.82533 -13.67351 -13.41901 -13.32666 -13.06263 -12.95359 -12.63906 -12.42954 -12.27542 -12.15789 -11.97085 -11.91788 -11.72258 -11.43261 -11.36970 -11.31393 -11.15288 -10.83976 -10.56726 -9.94696 -9.93606 -9.53946 -9.35579 -9.14517 -8.81726 -8.54164 -8.17272 -8.11694 -6.27791 -3.78987 0.44915 1.10260 1.51083 1.61774 3.00971 3.05227 3.09456 3.13727 3.17335 3.77979 4.09163 4.13883 4.28502 4.49345 4.55771 4.74679 4.81406 4.84318 4.94060 4.95791 5.19133 5.24579 5.30732 5.34609 5.36642 5.46148 5.56432 5.58378 5.62834 5.70844 5.78158 5.82586 5.86736 5.89613 5.96643 5.97740 6.01036 6.23710 6.27889 7.13863 7.27001 7.59560 7.62071 8.02776 8.18147 8.63350 8.98504 9.45988 9.86528 10.85400 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.001992 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.574849 B =14053.120070 C =15222.926651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.135 4.135 3 S 0.177 5.823 4 C -0.236 4.236 5 C -0.105 4.105 6 C -0.179 4.179 7 C 0.578 3.422 8 O -0.532 6.532 9 N -0.723 5.723 10 C 0.114 3.886 11 C -0.133 4.133 12 C 0.086 3.914 13 H 0.045 0.955 14 C -0.139 4.139 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.351 0.649 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.083 21.175 17.325 31.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.256 4.256 3 S 0.443 5.557 4 C -0.371 4.371 5 C -0.134 4.134 6 C -0.195 4.195 7 C 0.364 3.636 8 O -0.410 6.410 9 N -0.374 5.374 10 C -0.010 4.010 11 C -0.171 4.171 12 C -0.024 4.024 13 H 0.063 0.937 14 C -0.197 4.197 15 N -0.301 5.301 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.186 0.814 32 H 0.165 0.835 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.173 0.827 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.430 22.477 16.272 31.750 hybrid contribution -0.269 -2.017 1.594 2.585 sum 15.161 20.460 17.866 31.108 Atomic orbital electron populations 1.20682 0.86578 1.04700 1.03690 1.24595 1.02002 0.96817 1.02149 1.83129 0.95001 1.07423 1.70196 1.25401 1.02382 0.97251 1.12078 1.21197 0.94443 0.96394 1.01379 1.20139 0.92758 0.93671 1.12974 1.17557 0.86133 0.83695 0.76204 1.90771 1.14416 1.86020 1.49825 1.45794 1.09919 1.05864 1.75849 1.21492 0.96647 0.80035 1.02840 1.21983 0.97875 0.93678 1.03554 1.21455 0.95938 0.93538 0.91486 0.93705 1.21788 0.97829 0.98919 1.01186 1.60191 1.29913 1.12986 1.27038 1.21762 0.93441 0.97007 0.96359 1.19721 0.82966 0.83858 0.89872 1.90565 1.66661 1.49186 1.38173 1.42206 1.33062 1.35695 1.12112 1.19432 1.13735 1.20755 0.89326 0.86291 1.25042 0.96617 0.97533 0.97048 1.69624 1.23597 1.34704 1.24277 0.86667 0.79188 0.80754 0.82761 1.19653 1.20191 1.19485 0.90118 0.91416 0.87502 0.81375 0.83485 0.76620 0.91369 0.90773 0.89951 0.90588 0.92847 0.92455 0.91756 0.82740 0.89455 0.93708 0.79712 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.60 36.01 0.35 -0.59 16 2 C -0.14 -1.30 6.34 -35.11 -0.22 -1.53 16 3 S 0.18 1.21 22.97 -107.50 -2.47 -1.26 16 4 C -0.24 -1.47 11.12 28.86 0.32 -1.15 16 5 C -0.10 -0.76 9.91 -39.02 -0.39 -1.14 16 6 C -0.18 -1.81 5.98 -104.63 -0.63 -2.44 16 7 C 0.58 7.06 7.79 -12.63 -0.10 6.96 16 8 O -0.53 -8.36 14.06 5.25 0.07 -8.29 16 9 N -0.72 -6.95 5.53 -61.45 -0.34 -7.29 16 10 C 0.11 1.21 5.50 -4.04 -0.02 1.18 16 11 C -0.13 -1.17 4.92 -26.73 -0.13 -1.30 16 12 C 0.09 0.95 2.65 -67.72 -0.18 0.77 16 13 H 0.05 0.48 7.80 -51.93 -0.40 0.07 16 14 C -0.14 -1.41 9.41 37.16 0.35 -1.06 16 15 N -0.67 -10.25 5.93 -107.99 -0.64 -10.89 16 16 C 0.05 0.79 5.97 -4.98 -0.03 0.77 16 17 C 0.45 10.47 7.82 -10.99 -0.09 10.38 16 18 O -0.56 -15.50 15.78 5.55 0.09 -15.42 16 19 N -0.59 -14.41 5.09 -10.97 -0.06 -14.47 16 20 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 16 21 H 0.12 3.92 7.39 -52.49 -0.39 3.54 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.18 13.96 55.50 0.77 -25.40 16 24 Si 0.88 19.72 27.74 -169.99 -4.72 15.00 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.11 1.29 5.94 -51.93 -0.31 0.98 16 31 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.15 0.67 7.10 -52.48 -0.37 0.30 16 33 H 0.40 2.62 7.02 -40.82 -0.29 2.34 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.35 5.75 6.17 -39.29 -0.24 5.51 16 42 H 0.09 1.32 7.44 -51.93 -0.39 0.94 16 43 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 44 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -35.72 384.36 -8.82 -44.54 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -6.31 Total: 14.71 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.01 Total: 2.98 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.26 Total: -58.05 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.16 Total: -23.71 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.72 Total: 15.00 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.47 Total: -1.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.72 -8.82 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700323198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.322 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds