Wall clock time and date at job start Tue Mar 31 2020 23:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39830 * 126.45771 * 2 1 4 4 C 1.35448 * 107.86614 * 180.24181 * 3 2 1 5 5 N 1.35536 * 108.86935 * 359.75902 * 4 3 2 6 6 H 0.97006 * 125.67544 * 179.97438 * 5 4 3 7 7 C 1.37644 * 108.64765 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23847 * 179.97438 * 7 5 4 9 9 O 1.21694 * 119.99985 * 283.88246 * 8 7 5 10 10 N 1.34774 * 120.00129 * 103.59641 * 8 7 5 11 11 C 1.46506 * 119.99576 * 5.25887 * 10 8 7 12 12 C 1.46493 * 120.00437 * 185.24993 * 10 8 7 13 13 C 1.53006 * 109.47073 * 90.00327 * 12 10 8 14 14 H 1.08998 * 109.46788 * 64.99742 * 13 12 10 15 15 C 1.53000 * 109.47181 * 185.00412 * 13 12 10 16 16 N 1.46505 * 109.46912 * 305.00414 * 13 12 10 17 17 C 1.34780 * 119.99628 * 154.99943 * 16 13 12 18 18 O 1.21281 * 120.00082 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99476 * 179.97438 * 17 16 13 20 20 S 1.81005 * 109.46665 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99824 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99978 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00288 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99551 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00376 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.46950 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47206 * 119.99706 * 25 23 21 28 28 H 1.48499 * 109.47051 * 239.99890 * 25 23 21 29 29 H 1.09000 * 109.47389 * 270.16816 * 1 2 3 30 30 H 1.08997 * 109.47340 * 30.17407 * 1 2 3 31 31 H 1.09001 * 109.46965 * 150.16655 * 1 2 3 32 32 H 1.08005 * 126.07206 * 0.02562 * 3 2 1 33 33 H 1.08000 * 125.56533 * 179.75851 * 4 3 2 34 34 H 1.08997 * 109.47329 * 94.50659 * 11 10 8 35 35 H 1.09008 * 109.46885 * 214.50001 * 11 10 8 36 36 H 1.08991 * 109.47249 * 334.49630 * 11 10 8 37 37 H 1.08992 * 109.47615 * 210.00191 * 12 10 8 38 38 H 1.08999 * 109.47166 * 330.00667 * 12 10 8 39 39 H 1.08994 * 109.47319 * 59.99996 * 15 13 12 40 40 H 1.09001 * 109.46561 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47011 * 299.99396 * 15 13 12 42 42 H 0.97002 * 119.99881 * 334.99553 * 16 13 12 43 43 H 1.08988 * 109.47380 * 299.99852 * 19 17 16 44 44 H 1.09005 * 109.47255 * 60.00402 * 19 17 16 45 45 H 0.97001 * 119.99628 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6928 -0.0054 5 7 3.6283 -0.6625 -0.0035 6 1 4.4190 -1.2244 -0.0067 7 6 2.3263 -1.1090 0.0028 8 6 1.8898 -2.5093 0.0062 9 8 1.9456 -3.1665 -1.0165 10 7 1.4323 -3.0698 1.1433 11 6 1.2622 -2.2513 2.3464 12 6 1.1050 -4.4973 1.1762 13 6 2.3450 -5.2956 1.5839 14 1 2.6219 -5.0395 2.6065 15 6 2.0391 -6.7922 1.4977 16 7 3.4531 -4.9709 0.6821 17 6 4.7263 -5.1234 1.0971 18 8 4.9547 -5.5290 2.2170 19 6 5.8661 -4.7899 0.1693 20 16 7.4388 -5.0967 1.0112 21 6 8.5636 -4.6366 -0.2646 22 1 8.1884 -4.2912 -1.2166 23 6 9.9319 -4.7181 -0.0461 24 7 10.3891 -5.1386 1.1144 25 14 11.1244 -4.2296 -1.3984 26 1 10.3627 -3.7945 -2.5967 27 1 11.9811 -3.1134 -0.9235 28 1 11.9774 -5.3932 -1.7502 29 1 -0.3634 0.0030 1.0276 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3633 -0.8915 -0.5113 32 1 2.0137 2.1549 0.0004 33 1 4.4972 1.3252 -0.0105 34 1 0.2323 -1.8993 2.4038 35 1 1.4913 -2.8497 3.2283 36 1 1.9367 -1.3962 2.3025 37 1 0.3076 -4.6707 1.8987 38 1 0.7757 -4.8174 0.1877 39 1 1.7623 -7.0482 0.4750 40 1 2.9224 -7.3608 1.7886 41 1 1.2148 -7.0338 2.1686 42 1 3.2703 -4.6462 -0.2135 43 1 5.8032 -5.4136 -0.7223 44 1 5.8064 -3.7398 -0.1168 45 1 11.3454 -5.1959 1.2669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701614021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:31 Heat of formation + Delta-G solvation = -30.030062 kcal Electronic energy + Delta-G solvation = -27693.701583 eV Core-core repulsion = 23838.242467 eV Total energy + Delta-G solvation = -3855.459116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58313 -39.99178 -38.86081 -36.39605 -34.72161 -32.82656 -32.46101 -31.57280 -29.97998 -28.60980 -27.75719 -27.35811 -25.80279 -25.51223 -22.53186 -21.38110 -20.66665 -20.21134 -19.05555 -18.23075 -17.85008 -16.97243 -16.43944 -16.35639 -15.81934 -15.13783 -14.87051 -14.83150 -14.46070 -14.16373 -13.98872 -13.85990 -13.43535 -13.29982 -13.26973 -13.10677 -12.95530 -12.80264 -12.69722 -12.53042 -12.43364 -12.21007 -11.99600 -11.83409 -11.77231 -11.21895 -11.09530 -11.04565 -10.78109 -10.32476 -9.83542 -9.40631 -9.11337 -9.06649 -8.94460 -8.80554 -8.26784 -8.26595 -6.53667 -6.25076 -3.95748 1.70111 2.04402 2.60222 2.77077 3.03149 3.09335 3.18966 3.26118 3.30124 3.34188 3.73353 4.17512 4.32381 4.59086 4.83389 4.88091 4.90651 4.93953 5.09218 5.10281 5.11256 5.13944 5.21578 5.27334 5.42865 5.46563 5.47792 5.50598 5.56134 5.67179 5.77520 5.83014 5.84211 5.94928 6.02885 6.08742 6.10976 6.22977 6.65151 6.70731 6.81050 6.95917 7.27656 7.56985 7.72781 7.83738 8.32434 8.63151 9.20587 10.82308 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.003500 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.645796 B = 7998.994362 C = 9879.815728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.119 4.119 3 C -0.204 4.204 4 C 0.016 3.984 5 N -0.524 5.524 6 H 0.423 0.577 7 C -0.042 4.042 8 C 0.597 3.403 9 O -0.531 6.531 10 N -0.600 5.600 11 C 0.078 3.922 12 C 0.105 3.895 13 C 0.127 3.873 14 H 0.089 0.911 15 C -0.162 4.162 16 N -0.733 5.733 17 C 0.531 3.469 18 O -0.519 6.519 19 C -0.152 4.152 20 S -0.057 6.057 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.171 0.829 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.403 0.597 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.051 9.523 0.663 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C -0.229 4.229 4 C -0.119 4.119 5 N -0.119 5.119 6 H 0.261 0.739 7 C -0.157 4.157 8 C 0.384 3.616 9 O -0.406 6.406 10 N -0.333 5.333 11 C -0.065 4.065 12 C -0.018 4.018 13 C 0.021 3.979 14 H 0.107 0.893 15 C -0.221 4.221 16 N -0.390 5.390 17 C 0.317 3.683 18 O -0.394 6.394 19 C -0.303 4.303 20 S 0.169 5.831 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.188 0.812 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.241 0.759 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.375 8.338 2.101 23.970 hybrid contribution 0.934 0.763 -2.525 2.798 sum -21.440 9.101 -0.423 23.296 Atomic orbital electron populations 1.20200 0.89942 1.02274 1.01646 1.19745 0.95180 0.91015 1.06793 1.20673 0.91719 0.98493 1.11984 1.22003 0.99655 0.82728 1.07535 1.41861 1.06824 1.07358 1.55812 0.73922 1.19777 0.84865 0.93136 1.17888 1.17224 0.76804 0.84630 0.82975 1.90807 1.54594 1.63244 1.31990 1.47692 1.64998 1.09452 1.11109 1.21871 1.02064 0.95979 0.86583 1.21944 0.96699 0.78886 1.04295 1.21310 0.86250 0.94679 0.95709 0.89320 1.22127 1.02551 0.95260 1.02131 1.46290 1.05105 1.69453 1.18196 1.20293 0.83210 0.76864 0.87973 1.90683 1.84183 1.44169 1.20363 1.23522 1.00230 1.04024 1.02487 1.85368 0.90629 1.86907 1.20181 1.22915 0.93036 1.51260 1.01213 0.90945 1.24987 0.97444 0.94749 0.96344 1.70029 1.14335 1.43668 1.22211 0.86129 0.80205 0.78342 0.80910 1.19610 1.20542 1.20497 0.91684 0.91433 0.92397 0.84189 0.81169 0.92079 0.90867 0.90301 0.88608 0.88856 0.92252 0.91239 0.91693 0.75938 0.89255 0.90107 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.20 36.01 0.37 -0.31 16 2 C -0.12 -1.24 5.86 -104.16 -0.61 -1.85 16 3 C -0.20 -1.96 10.76 -39.98 -0.43 -2.39 16 4 C 0.02 0.15 11.89 -16.91 -0.20 -0.05 16 5 N -0.52 -5.88 6.10 -9.39 -0.06 -5.94 16 6 H 0.42 4.69 8.96 -40.82 -0.37 4.33 16 7 C -0.04 -0.49 5.05 -81.98 -0.41 -0.91 16 8 C 0.60 7.45 6.32 -12.86 -0.08 7.37 16 9 O -0.53 -8.08 14.72 5.19 0.08 -8.01 16 10 N -0.60 -5.96 2.77 -183.13 -0.51 -6.46 16 11 C 0.08 0.60 10.26 59.85 0.61 1.21 16 12 C 0.10 0.94 5.17 -4.04 -0.02 0.92 16 13 C 0.13 1.50 2.88 -67.92 -0.20 1.30 16 14 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 15 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 16 N -0.73 -10.91 4.48 -53.80 -0.24 -11.15 16 17 C 0.53 10.21 7.81 -10.98 -0.09 10.12 16 18 O -0.52 -11.70 15.52 5.56 0.09 -11.61 16 19 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 20 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 21 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 25 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.51 7.96 -51.93 -0.41 0.10 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.51 8.11 -51.92 -0.42 0.08 16 36 H 0.08 0.69 6.49 -51.93 -0.34 0.35 16 37 H 0.10 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.09 0.90 7.36 -51.93 -0.38 0.52 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.40 5.97 6.04 -40.82 -0.25 5.72 16 43 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 44 H 0.08 1.56 8.14 -51.91 -0.42 1.13 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -35.97 393.02 -8.26 -44.23 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.75 Total: 7.61 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.29 Total: -1.93 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.07 Total: -48.88 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.16 Total: -19.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.97 -8.26 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701614021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.203 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds