Wall clock time and date at job start Tue Mar 31 2020 23:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39830 * 126.45771 * 2 1 4 4 C 1.35448 * 107.86614 * 180.24181 * 3 2 1 5 5 N 1.35536 * 108.86935 * 359.75902 * 4 3 2 6 6 H 0.97006 * 125.67544 * 179.97438 * 5 4 3 7 7 C 1.37644 * 108.64765 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23847 * 179.97438 * 7 5 4 9 9 O 1.21694 * 119.99985 * 283.88246 * 8 7 5 10 10 N 1.34774 * 120.00129 * 103.59641 * 8 7 5 11 11 C 1.46506 * 119.99576 * 5.25887 * 10 8 7 12 12 C 1.46493 * 120.00437 * 185.24993 * 10 8 7 13 13 C 1.53006 * 109.47073 * 90.00327 * 12 10 8 14 14 H 1.08998 * 109.46788 * 64.99742 * 13 12 10 15 15 C 1.53000 * 109.47181 * 185.00412 * 13 12 10 16 16 N 1.46505 * 109.46912 * 305.00414 * 13 12 10 17 17 C 1.34780 * 119.99628 * 154.99943 * 16 13 12 18 18 O 1.21281 * 120.00082 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99476 * 179.97438 * 17 16 13 20 20 S 1.81005 * 109.46665 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99824 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99978 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00288 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99551 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00376 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.46950 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47206 * 119.99706 * 25 23 21 28 28 H 1.48499 * 109.47051 * 239.99890 * 25 23 21 29 29 H 1.09000 * 109.47389 * 270.16816 * 1 2 3 30 30 H 1.08997 * 109.47340 * 30.17407 * 1 2 3 31 31 H 1.09001 * 109.46965 * 150.16655 * 1 2 3 32 32 H 1.08005 * 126.07206 * 0.02562 * 3 2 1 33 33 H 1.08000 * 125.56533 * 179.75851 * 4 3 2 34 34 H 1.08997 * 109.47329 * 94.50659 * 11 10 8 35 35 H 1.09008 * 109.46885 * 214.50001 * 11 10 8 36 36 H 1.08991 * 109.47249 * 334.49630 * 11 10 8 37 37 H 1.08992 * 109.47615 * 210.00191 * 12 10 8 38 38 H 1.08999 * 109.47166 * 330.00667 * 12 10 8 39 39 H 1.08994 * 109.47319 * 59.99996 * 15 13 12 40 40 H 1.09001 * 109.46561 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47011 * 299.99396 * 15 13 12 42 42 H 0.97002 * 119.99881 * 334.99553 * 16 13 12 43 43 H 1.08988 * 109.47380 * 299.99852 * 19 17 16 44 44 H 1.09005 * 109.47255 * 60.00402 * 19 17 16 45 45 H 0.97001 * 119.99628 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6928 -0.0054 5 7 3.6283 -0.6625 -0.0035 6 1 4.4190 -1.2244 -0.0067 7 6 2.3263 -1.1090 0.0028 8 6 1.8898 -2.5093 0.0062 9 8 1.9456 -3.1665 -1.0165 10 7 1.4323 -3.0698 1.1433 11 6 1.2622 -2.2513 2.3464 12 6 1.1050 -4.4973 1.1762 13 6 2.3450 -5.2956 1.5839 14 1 2.6219 -5.0395 2.6065 15 6 2.0391 -6.7922 1.4977 16 7 3.4531 -4.9709 0.6821 17 6 4.7263 -5.1234 1.0971 18 8 4.9547 -5.5290 2.2170 19 6 5.8661 -4.7899 0.1693 20 16 7.4388 -5.0967 1.0112 21 6 8.5636 -4.6366 -0.2646 22 1 8.1884 -4.2912 -1.2166 23 6 9.9319 -4.7181 -0.0461 24 7 10.3891 -5.1386 1.1144 25 14 11.1244 -4.2296 -1.3984 26 1 10.3627 -3.7945 -2.5967 27 1 11.9811 -3.1134 -0.9235 28 1 11.9774 -5.3932 -1.7502 29 1 -0.3634 0.0030 1.0276 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3633 -0.8915 -0.5113 32 1 2.0137 2.1549 0.0004 33 1 4.4972 1.3252 -0.0105 34 1 0.2323 -1.8993 2.4038 35 1 1.4913 -2.8497 3.2283 36 1 1.9367 -1.3962 2.3025 37 1 0.3076 -4.6707 1.8987 38 1 0.7757 -4.8174 0.1877 39 1 1.7623 -7.0482 0.4750 40 1 2.9224 -7.3608 1.7886 41 1 1.2148 -7.0338 2.1686 42 1 3.2703 -4.6462 -0.2135 43 1 5.8032 -5.4136 -0.7223 44 1 5.8064 -3.7398 -0.1168 45 1 11.3454 -5.1959 1.2669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701614021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:31 Heat of formation + Delta-G solvation = -54.727059 kcal Electronic energy + Delta-G solvation = -27694.772525 eV Core-core repulsion = 23838.242467 eV Total energy + Delta-G solvation = -3856.530058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37968 -41.09332 -40.10560 -37.43165 -35.80009 -34.63480 -33.56789 -32.85768 -30.80565 -30.10135 -28.49443 -28.07925 -27.70804 -26.56713 -23.50743 -22.37268 -21.54954 -21.40463 -19.97474 -19.78349 -18.99078 -18.09830 -17.73648 -17.51636 -16.92824 -16.70947 -16.37561 -16.19584 -15.88714 -15.24831 -14.86724 -14.79489 -14.71388 -14.54658 -14.23357 -14.04604 -13.98346 -13.82567 -13.55467 -13.37791 -13.33724 -13.21310 -13.14827 -13.01420 -12.95419 -12.80154 -12.61702 -12.46680 -12.16978 -11.76451 -11.26624 -11.20303 -11.00097 -10.35373 -10.23977 -9.78410 -9.69041 -9.04644 -8.72320 -8.39687 -6.18091 0.88553 1.17845 1.21574 1.37325 1.41741 1.52342 1.53918 1.85598 2.00275 2.21521 2.25910 2.54063 2.94444 3.25883 3.54445 3.69117 3.90757 4.04411 4.11808 4.15775 4.21780 4.26499 4.33543 4.36069 4.42677 4.44561 4.60027 4.69194 4.76007 4.82478 4.86122 4.92790 4.98035 5.08914 5.18475 5.20547 5.35455 5.36949 5.39151 5.51507 5.90779 6.06509 6.14139 6.15015 6.38603 6.48847 6.90895 7.01790 7.15424 8.69662 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.003500 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.645796 B = 7998.994362 C = 9879.815728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.120 4.120 3 C -0.213 4.213 4 C 0.013 3.987 5 N -0.535 5.535 6 H 0.419 0.581 7 C -0.071 4.071 8 C 0.593 3.407 9 O -0.568 6.568 10 N -0.595 5.595 11 C 0.075 3.925 12 C 0.110 3.890 13 C 0.122 3.878 14 H 0.078 0.922 15 C -0.156 4.156 16 N -0.714 5.714 17 C 0.534 3.466 18 O -0.557 6.557 19 C -0.132 4.132 20 S -0.133 6.133 21 C -0.550 4.550 22 H 0.078 0.922 23 C 0.017 3.983 24 N -0.908 5.908 25 Si 0.997 3.003 26 H -0.261 1.261 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.161 0.839 33 H 0.193 0.807 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.099 0.901 42 H 0.407 0.593 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.871 10.871 -0.047 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C -0.237 4.237 4 C -0.122 4.122 5 N -0.129 5.129 6 H 0.256 0.744 7 C -0.185 4.185 8 C 0.381 3.619 9 O -0.447 6.447 10 N -0.326 5.326 11 C -0.067 4.067 12 C -0.013 4.013 13 C 0.017 3.983 14 H 0.096 0.904 15 C -0.215 4.215 16 N -0.370 5.370 17 C 0.320 3.680 18 O -0.435 6.435 19 C -0.283 4.283 20 S 0.094 5.906 21 C -0.698 4.698 22 H 0.096 0.904 23 C -0.188 4.188 24 N -0.545 5.545 25 Si 0.819 3.181 26 H -0.184 1.184 27 H -0.195 1.195 28 H -0.198 1.198 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.179 0.821 33 H 0.210 0.790 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.118 0.882 42 H 0.245 0.755 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.262 9.699 1.408 26.167 hybrid contribution 1.370 0.380 -2.266 2.675 sum -22.893 10.078 -0.859 25.028 Atomic orbital electron populations 1.20253 0.88428 1.02348 1.02841 1.20123 0.96330 0.90792 1.05551 1.21003 0.91568 0.99333 1.11755 1.22516 1.00809 0.82349 1.06493 1.41975 1.06613 1.07951 1.56401 0.74447 1.19904 0.85404 0.93301 1.19929 1.17429 0.76538 0.84875 0.83093 1.90774 1.56393 1.64157 1.33371 1.47801 1.63782 1.09947 1.11070 1.22033 1.03375 0.95508 0.85785 1.22041 0.95959 0.77867 1.05409 1.21615 0.86119 0.96167 0.94436 0.90403 1.22077 1.02305 0.93668 1.03428 1.46204 1.04406 1.67678 1.18668 1.19966 0.84175 0.76823 0.87056 1.90670 1.84808 1.46315 1.21708 1.23372 0.97466 1.05210 1.02279 1.85460 0.94951 1.87494 1.22664 1.23214 0.93736 1.51525 1.01326 0.90431 1.26081 0.99383 0.94312 0.98997 1.70173 1.15006 1.44731 1.24544 0.84935 0.77393 0.78220 0.77587 1.18441 1.19526 1.19808 0.89851 0.90276 0.93351 0.82145 0.78963 0.89462 0.89902 0.91510 0.84392 0.89067 0.91520 0.94512 0.88222 0.75533 0.88417 0.88437 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.20 71.24 0.73 -0.43 16 2 C -0.12 -2.33 5.86 -19.56 -0.11 -2.44 16 3 C -0.21 -3.73 10.76 22.01 0.24 -3.49 16 4 C 0.01 0.24 11.89 83.48 0.99 1.23 16 5 N -0.54 -11.89 6.10 -183.63 -1.12 -13.02 16 6 H 0.42 9.51 8.96 -92.70 -0.83 8.67 16 7 C -0.07 -1.65 5.05 40.35 0.20 -1.44 16 8 C 0.59 14.40 6.32 86.45 0.55 14.94 16 9 O -0.57 -17.20 14.72 -4.33 -0.06 -17.26 16 10 N -0.60 -10.81 2.77 -851.52 -2.36 -13.17 16 11 C 0.07 0.99 10.26 127.77 1.31 2.30 16 12 C 0.11 1.71 5.17 86.38 0.45 2.16 16 13 C 0.12 2.73 2.88 44.99 0.13 2.86 16 14 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16 15 C -0.16 -3.14 9.48 71.98 0.68 -2.46 16 16 N -0.71 -21.07 4.48 -442.51 -1.98 -23.05 16 17 C 0.53 20.92 7.81 87.66 0.68 21.60 16 18 O -0.56 -25.86 15.52 -3.03 -0.05 -25.91 16 19 C -0.13 -5.63 6.16 71.24 0.44 -5.19 16 20 S -0.13 -7.45 20.57 -56.49 -1.16 -8.62 16 21 C -0.55 -31.87 9.50 67.95 0.65 -31.23 16 22 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 23 C 0.02 1.00 5.49 84.86 0.47 1.46 16 24 N -0.91 -55.63 13.22 21.65 0.29 -55.35 16 25 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.78 7.96 -2.39 -0.02 0.76 16 32 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.95 8.11 -2.38 -0.02 0.93 16 36 H 0.07 1.08 6.49 -2.39 -0.02 1.07 16 37 H 0.14 1.05 8.07 -2.39 -0.02 1.03 16 38 H 0.09 1.55 7.36 -2.39 -0.02 1.54 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.41 11.90 6.04 -92.71 -0.56 11.34 16 43 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 44 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -80.75 393.02 2.60 -78.16 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.37 Total: 32.36 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 7.40 Total: -0.12 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -5.18 Total: -104.58 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.11 Total: -43.17 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.62 kcal Total: -80.75 2.60 -78.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701614021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.430 kcal (2) G-P(sol) polarization free energy of solvation -80.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds